[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 59 items for (author: kleiger & g)

EMDB-46644:
Cryo-EM structure of a trapped ARIH1-diUB-CRL2-KLHDC10 complex - consensus map
Method: single particle / : Chittori S, Scott DC, Schulman BA

EMDB-46645:
Focused map of Cryo-EM structure of Ubiquitin C-degron bound to KLHDC10-EloB/C
Method: single particle / : Chittori S, Scott DC, Schulman BA

PDB-9d8p:
Focused map of Cryo-EM structure of Ubiquitin C-degron bound to KLHDC10-EloB/C
Method: single particle / : Chittori S, Scott DC, Schulman BA

EMDB-19856:
Focused map 1- K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19857:
Focused map 2 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19858:
Focused map 3 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19859:
Focused map 4 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-19860:
Focused map 5 - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB~acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18207:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide, Glacios map
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18230:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18915:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

PDB-8q7r:
Ubiquitin ligation to substrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2~donor UB-Sil1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

PDB-8r5h:
Ubiquitin ligation to neosubstrate by a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB-BRD4 BD2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17798:
CUL2-RBX1-ELOB/C-FEM1C-SIL1 conformation 1
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17799:
CUL2-RBX1-ELOB/C-FEM1C-SIL1 conformation 2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17800:
NEDD8-CUL2-RBX1-ELOB/C-FEM1C-SIL1 conformation 1
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17801:
NEDD8-CUL2-RBX1-ELOB/C-FEM1C-SIL1 conformation 2
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17802:
K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL1-RBX1-SKP1-FBXW7 with trapped UBE2R2-donor UB-acceptor UB-cyclin E peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17803:
Consensus map - K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17822:
K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-18767:
K48-linked ubiquitin chain formation with a cullin-RING E3 ligase & Cdc34: NEDD8-CUL2-RBX1-ELOB/C-VHL-MZ1 with trapped UBE2R2~donor UB~acceptor UB-BRD4
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

PDB-8pql:
K48-linked ubiquitin chain formation with a cullin-RING E3 ligase and Cdc34: NEDD8-CUL2-RBX1-ELOB/C-FEM1C with trapped UBE2R2-donor UB-acceptor UB-SIL1 peptide
Method: single particle / : Liwocha J, Prabu JR, Kleiger G, Schulman BA

EMDB-17705:
Structure of Chelator-GIDSR4 - Fbp1 - phospho-Ubc8~ubiquitin - class I
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17706:
Structure of Chelator-GIDSR4 - Fbp1 - phospho-Ubc8~ubiquitin - class II
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17707:
Chelator-GIDSR4 - Fbp1 - phospho-Ubc8~ubiquitin - class III
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17709:
Structure of Chelator-GIDSR4 - Fbp1 - phospho-Ubc8~ubiquitin - class V
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17710:
Structure of Chelator-GIDSR4 - Fbp1 - phospho-Ubc8~ubiquitin - class IV
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17713:
Catalytic module of human CTLH E3 ligase bound to multiphosphorylated UBE2H~ubiquitin
Method: single particle / : Chrustowicz J, Sherpa D, Prabu RJ, Schulman BA

EMDB-17715:
SRS and Cat modules of human CTLHSR4 bound to multiphosphorylated UBE2H~ubiquitin
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17716:
Structure of CTLHSR4 - phospho-UBE2H~ubiquitin bound to engineered VH
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17717:
SRS and Cat modules of yeast Chelator-GIDSR4 bound to multiphosphorylated Ubc8~ubiquitin
Method: single particle / : Chrustowicz J, Sherpa D, Schulman BA

EMDB-17764:
Catalytic module of yeast GID E3 ligase bound to multiphosphorylated Ubc8~ubiquitin
Method: single particle / : Chrustowicz J, Sherpa D, Prabu RJ, Schulman BA

PDB-8pjn:
Catalytic module of human CTLH E3 ligase bound to multiphosphorylated UBE2H~ubiquitin
Method: single particle / : Chrustowicz J, Sherpa D, Prabu RJ, Schulman BA

PDB-8pmq:
Catalytic module of yeast GID E3 ligase bound to multiphosphorylated Ubc8~ubiquitin
Method: single particle / : Chrustowicz J, Sherpa D, Prabu RJ, Schulman BA

EMDB-16370:
Structure of CUL2-KLHDC2 E3 ligase autoinhibited by C-degron mimicry
Method: single particle / : Scott DC, King M, Baek K, Schulman BA

EMDB-12040:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-p27~Ub~ARIH1. Transition State 2
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

PDB-7b5m:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-p27~Ub~ARIH1. Transition State 2
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12004:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 ligase superassembly. NEDD8-CUL1-RBX1-SKP1-FBXW7-Cyclin E-ARIH1-UBE2L3~Ub. Pre-Transition State 1
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12005:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-FBXW7-Cyclin E-ARIH1~Ub. post-Transition State 1
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12006:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-FBXW7-Cyclin E~Ub~ARIH1. Transition State 2
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12036:
Ubiquitin ligation to F-box protein targets by SCF-RBR E3-E3 super-assembly
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12037:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12038:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12039:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-FBXW7-Cyclin E~Ub~ARIH1. Transition State 2
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12041:
Focused map-catalytic side. Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-UBE2L3~Ub~ARIH1.
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12048:
Focused map- CyclinA-CDK2-class. Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27. Transition State 1
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-12050:
Focused map- Cullin scaffold. Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-ARIH1 Ariadne. Transition State 1
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

PDB-7b5l:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27-UBE2L3~Ub~ARIH1. Transition State 1
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

PDB-7b5n:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: NEDD8-CUL1-RBX1-UBE2L3~Ub~ARIH1.
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

PDB-7b5r:
Ubiquitin ligation to F-box protein substrates by SCF-RBR E3-E3 super-assembly: CUL1-RBX1-SKP1-SKP2-CKSHS1-Cyclin A-CDK2-p27
Method: single particle / : Horn-Ghetko D, Prabu JR, Schulman BA

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more