[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 87 items for (author: kawakami & h)

EMDB-39278:
A3R-Gi complex bound to NECA
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61666:
A3R-Gi complex bound to NECA (receptor focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61668:
A3R-Gi complex bound to adenosine (receptor focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61670:
A3R-Gi complex bound to adenosine (G protein focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61673:
A3R-Gi complex bound to m6a (receptor focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61674:
A3R-Gi complex bound to NECA (G protein focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61675:
A3R-Gi complex bound to i6a (receptor focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61676:
A3R-Gi complex bound to i6a (G protein focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61677:
A3R-Gi complex bound to namodenoson (receptor focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61678:
A3R-Gi complex bound to namodenoson (G protein focused)
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-39279:
A3R-Gi complex bound to adenosine
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-39280:
A3R-Gi complex bound to m6A
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-39281:
A3R-Gi complex bound to i6A
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-39282:
A3R-Gi complex bound to namodenoson
Method: single particle / : Oshima HS, Shihoya W, Nureki O

EMDB-61746:
Cryo-EM structure of PTH-PTH1R-Gq (upright state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61747:
Cryo-EM structure of PTH-PTH1R-Gq (tilted state)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61795:
Cryo-EM structure of PTH-PTH1R-Gq complex (upright state; consensus refinement)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61796:
Cryo-EM structure of PTH-PTH1R-Gq complex (upright state; receptor focused refinement)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61797:
Cryo-EM structure of PTH-PTH1R-Gq complex (tilted state; consensus refinement map)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-61798:
Cryo-EM structure of PTH-PTH1R-Gq complex (tilted state; focused refinement map)
Method: single particle / : Sano FK, Hirano H, Itoh Y, Nureki O

EMDB-50621:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 2)
Method: helical / : Arseni D, Ryskeldi-Falcon B

EMDB-50628:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)
Method: helical / : Arseni D, Ryskeldi-Falcon B

PDB-9fof:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 2)
Method: helical / : Arseni D, Ryskeldi-Falcon B

PDB-9for:
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)
Method: helical / : Arseni D, Ryskeldi-Falcon B

EMDB-38931:
Cryo-EM structure of artificial protein nanocage mTIP120-Ba
Method: single particle / : Ohara N, Kawakami N, Arai R, Adachi N, Ikeda A, Senda T, Miyamoto K

EMDB-37480:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

PDB-8wey:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

EMDB-35234:
Cryo-EM structure of Acipimox bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Method: single particle / : Park JH, Ishimoto N, Park SY

EMDB-35235:
Cryo-EM structure of GSK256073 bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Method: single particle / : Park JH, Ishimoto N, Park SY

PDB-8i7v:
Cryo-EM structure of Acipimox bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Method: single particle / : Park JH, Ishimoto N, Park SY

PDB-8i7w:
Cryo-EM structure of GSK256073 bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Method: single particle / : Park JH, Ishimoto N, Park SY

EMDB-36900:
Cryo-EM structure of niacin bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Method: single particle / : Park JH, Ishimoto N, Park SY

EMDB-36901:
Cryo-EM structure of Acipimox bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Method: single particle / : Park JH, Ishimoto N, Park SY

EMDB-36902:
Cryo-EM structure of GSK256073 bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Method: single particle / : Park JH, Ishimoto N, Park SY

PDB-8k5b:
Cryo-EM structure of niacin bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Method: single particle / : Park JH, Ishimoto N, Park SY

PDB-8k5c:
Cryo-EM structure of Acipimox bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Method: single particle / : Park JH, Ishimoto N, Park SY

PDB-8k5d:
Cryo-EM structure of GSK256073 bound human hydroxy-carboxylic acid receptor 2 (Local refinement)
Method: single particle / : Park JH, Ishimoto N, Park SY

EMDB-34437:
Cryo-EM structure of niacin bound human hydroxy-carboxylic acid receptor 2 in complex with Gi heterotrimer
Method: single particle / : Park JH, Ishimoto N, Park SY

EMDB-35351:
Cryo-EM structure of CXCL8 bound C-X-C chemokine receptor 1 in complex with Gi heterotrimer
Method: single particle / : Ishimoto N, Park JH, Park SY

PDB-8ic0:
Cryo-EM structure of CXCL8 bound C-X-C chemokine receptor 1 in complex with Gi heterotrimer
Method: single particle / : Ishimoto N, Park JH, Park SY

EMDB-35981:
Single-particle cryo-EM structure of mouse apoferritin at 1.49 Angstrom resolution (Dataset B)
Method: single particle / : Kawakami K, Maki-Yonekura S, Hamaguchi T, Takaba K, Yonekura K

EMDB-35984:
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Method: single particle / : Kawakami K, Maki-Yonekura S, Hamaguchi T, Takaba K, Yonekura K

PDB-8j5a:
Single-particle cryo-EM structure of mouse apoferritin at 1.19 Angstrom resolution (Dataset A)
Method: single particle / : Kawakami K, Maki-Yonekura S, Hamaguchi T, Takaba K, Yonekura K

EMDB-34305:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O, Yamashita K, Nishizawa T, Kato HE

PDB-8gw8:
the human PTH1 receptor bound to an intracellular biased agonist
Method: single particle / : Kobayashi K, Kusakizako T, Okamoto HH, Nureki O

EMDB-33593:
Structure of the Anabaena PSI-monomer-IsiA supercomplex
Method: single particle / : Nagao R, Kato K, Hamaguchi T, Kawakami K, Yonekura K, Shen JR

PDB-7y3f:
Structure of the Anabaena PSI-monomer-IsiA supercomplex
Method: single particle / : Nagao R, Kato K, Hamaguchi T, Kawakami K, Yonekura K, Shen JR

EMDB-33479:
Cryo-EM structure of LPS-bound GPR174 in complex with Gs protein
Method: single particle / : He Y, Liang J

PDB-7xv3:
Cryo-EM structure of LPS-bound GPR174 in complex with Gs protein
Method: single particle / : He Y, Liang J

EMDB-33289:
Cryo-EM structure of mTIP60-Ba (metal-ion induced TIP60 (K67E) complex with barium ions
Method: single particle / : Ohara N, Kawakami N, Arai R, Adachi N, Moriya T, Kawasaki M, Miyamoto K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more