[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 131 items for (author: hua & zk)

EMDB-64003:
Structure of glycosylphosphatidylinositol transamidase, state 3, unsharpened map
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-64000:
Structure of glycosylphosphatidylinositol transamidase,state 1
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-64001:
Structure of glycosylphosphatidylinositol transamidase,state 1,unsharpened map
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-64002:
Structure of glycosylphosphatidylinositol transamidase,state 2
Method: single particle / : Hua ZK, Ding XY, Zhang M, Liu XT, Zhang MJ, Yu HJ

EMDB-48856:
70S Ribosome of Goslar infected WT E. coli
Method: subtomogram averaging / : Klusch N, Villa E

EMDB-48875:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-48876:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49120:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49121:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49122:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 30 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-49123:
In situ cryoET of an EPI vesicle in a Goslar infected WT E. coli cell 1 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-51701:
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #1
Method: electron tomography / : Kraus F, He Y, Swarup S, Overmyer KA, Jiang Y, Brenner J, Capitanio C, Bieber A, Jen A, Nightingale NM, Anderson BJ, Lee C, Paulo JA, Smith IR, Plitzko JM, Gygi SP, Schulman BA, Wilfling F, Coon JJ, Harper JW

EMDB-51702:
In situ cryo-electron tomogram of a multi-lamellar vesicle in a NPC2-/- HeLa cell. #2
Method: electron tomography / : Kraus F, He Y, Swarup S, Overmyer KA, Jiang Y, Brenner J, Capitanio C, Bieber A, Jen A, Nightingale NM, Anderson BJ, Lee C, Paulo JA, Smith IR, Plitzko JM, Gygi SP, Schulman BA, Wilfling F, Coon JJ, Harper JW

EMDB-36764:
Cryo-EM structure of human 26S RP (Ed state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

PDB-8k0g:
Cryo-EM structure of human 26S RP (Ed state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-39770:
LH2 complex from Ectothiorhodospira haloalkaliphila at near-atomic resolution
Method: single particle / : Burtseva AD, Baymukhametov TN, Popov VO, Ashikhmin AA, Boyko KM

EMDB-36645:
Cryo-EM structure of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

PDB-8jti:
Cryo-EM structure of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-36598:
Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) without any bound substrate.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-36605:
Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

PDB-8jri:
Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) without any bound substrate.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

PDB-8jrt:
Cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-50803:
Cryo-EM structure of single-layered nucleoprotein-RNA helical assembly from Marburg virus, trimeric repeat unit
Method: helical / : Zinzula L, Beck F, Camasta M, Bohn S, Liu C, Morado D, Bracher A, Plitzko JM, Baumeister W

EMDB-50804:
Density for a protein trimer unit bound to RNA from a single-layered nucleoprotein-RNA helical assembly from Marburg virus
Method: single particle / : Zinzula L, Beck F, Camasta M, Bohn S, Liu C, Morado D, Bracher A, Plitzko JM, Baumeister W

PDB-9fvd:
Cryo-EM structure of single-layered nucleoprotein-RNA helical assembly from Marburg virus, trimeric repeat unit
Method: helical / : Zinzula L, Beck F, Camasta M, Bohn S, Liu C, Morado D, Bracher A, Plitzko JM, Baumeister W

EMDB-37327:
Local refinement cryo-EM map of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub, focused on Rpn3/Rpn7 region.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37328:
Local refinement cryo-EM map of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub, focused on AAA+ ATPase subcomplex.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37334:
Consensus cryo-EM map of human 26S RP (Ed state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37335:
Local refinement cryo-EM map of human 26S RP (Ed state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub, focused on the Ub binding region.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37341:
Local refinement cryo-EM map of human 26S RP (Ed state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub, focused on the RP lid.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37344:
Local refinement cryo-EM map of human 26S RP (Ed state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub, focused on AAA+ ATPase subcomplex.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37269:
Consensus cryo-EM structure of human 26S proteasomal RP subcomplex (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37273:
Local refinement cryo-EM map of human 26S RP (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub, focused on the Ub binding region.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37276:
Local refinement cryo-EM map of human 26S RP (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub, focused on Rpn3/Rpn7 region.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37277:
Local refinement cryo-EM map of human 26S RP (Ea state) bound to K11/K48-branched ubiquitin (Ub) chain composed of three Ub, focused on AAA+ ATPase subcomplex.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37317:
Consensus cryo-EM map of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-37319:
Local refinement cryo-EM map of human 26S RP (Eb state) bound to K11/K48-branched ubiquitin (Ub) chain composed of four Ub, focused on the Ub binding region.
Method: single particle / : Hsu STD, Draczkowski P, Wang YS

EMDB-50504:
in situ 70S Myxococcus xanthus ribosome
Method: subtomogram averaging / : Xu P, Schumacher D, Liu C, Dickmanns M, Beck F, Plitzko J, Baumeister W, Sogaard-Andersen L

EMDB-50515:
PomX filament from Myxococcus xanthus
Method: single particle / : Xu P, Schumacher D, Liu C, Dickmanns M, Beck F, Plitzko J, Baumeister W, Sogaard-Andersen L

EMDB-43091:
hGBP1 conformer on the bacterial outer membrane
Method: subtomogram averaging / : Zhu S, MacMicking J

EMDB-43153:
hGBP1 conformer on the bacterial outer membrane
Method: subtomogram averaging / : Zhu S, MacMicking J

EMDB-38066:
The cryo-EM structure of the Mycobacterium tuberculosis CRISPR-Csm complex
Method: single particle / : Liu MX, Li ZK

EMDB-35154:
Cryo-EM structure of Cas12g-sgRNA binary complex
Method: single particle / : Ouyang SY, Liu MX, Li ZK

EMDB-27640:
Org 2274179-0-bound Thyrotropin Receptor
Method: single particle / : Faust B, Cheng Y, Manglik A

EMDB-27647:
Human thyrotropin analog TR1402 bound to human Thyrotropin receptor (extracellular domain map only)
Method: single particle / : Faust B, Cheng Y, Manglik A

EMDB-27648:
Human thyrotropin analog TR1402 bound to human Thyrotropin receptor (transmembrane domain and G protein map only)
Method: single particle / : Faust B, Cheng Y, Manglik A

EMDB-27649:
Native human TSH bound to human Thyrotropin receptor (extracellular domain map only)
Method: single particle / : Faust B, Cheng Y, Manglik A

EMDB-27650:
Native human TSH bound to human Thyrotropin receptor (transmembrane domain and G protein map only)
Method: single particle / : Faust B, Cheng Y, Manglik A

EMDB-27651:
M22 Fab bound to human Thyrotropin receptor (extracellular domain map only)
Method: single particle / : Faust B, Cheng Y, Manglik A

EMDB-27652:
M22 Fab bound to human Thyrotropin receptor (transmembrane domain and G protein map only)
Method: single particle / : Faust B, Cheng Y, Manglik A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more