[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 46 items for (author: hirokawa & n)

EMDB-65777:
Cryo-EM structure of the mouse kinesin-2 tail in complex with KAP3 adaptor
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

EMDB-65778:
Cryo-EM structure of the kinesin-2 tail domain in complex with KAP3 and APC
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

PDB-9w9h:
Cryo-EM structure of the mouse kinesin-2 tail in complex with KAP3 adaptor
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

PDB-9w9i:
Cryo-EM structure of the kinesin-2 tail domain in complex with KAP3 and APC
Method: single particle / : Jiang X, Danev R, Yanagisawa H, Kikkawa M

EMDB-17171:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17173:
CTE typeIII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17174:
CTE typeII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17175:
TMEM106B Fold1-s filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17176:
TMEM106B Fold I-d filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17177:
Ab typeII filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17178:
CTE typeI tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17179:
TypeII tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17180:
CTE typeIII tau filament
Method: helical / : Tetter S, Qi C, Ryskeldi-Falcon B, Scheres SHW, Goedert M

EMDB-17181:
PHF tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ot6:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ot9:
CTE typeIII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otc:
CTE typeII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otd:
TMEM106B Fold1-s filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ote:
TMEM106B Fold I-d filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otf:
Ab typeII filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otg:
CTE typeI tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8oth:
TypeII tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8oti:
CTE typeIII tau filament
Method: helical / : Tetter S, Qi C, Ryskeldi-Falcon B, Scheres SHW, Goedert M

PDB-8otj:
PHF tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-32019:
Cryo-EM structure of SAM-Tom40 intermediate complex
Method: single particle / : Takeda H, Tsutsumi A, Kikkawa M, Endo T

PDB-7vku:
Cryo-EM structure of SAM-Tom40 intermediate complex
Method: single particle / : Takeda H, Tsutsumi A, Kikkawa M, Endo T

PDB-5xxt:
GDP-microtubule complexed with nucleotide-free KIF5C
Method: helical / : Morikawa M, Shigematsu H, Nitta R, Hirokawa N

PDB-5xxw:
GDP-microtubule complexed with KIF5C in ATP state
Method: helical / : Morikawa M, Shigematsu H, Nitta R, Hirokawa N

PDB-5xxx:
GMPCPP-microtubule complexed with nucleotide-free KIF5C
Method: helical / : Morikawa M, Shigematsu H, Nitta R, Hirokawa N

EMDB-6779:
GDP-microtubule complexed with nucleotide-free KIF5C
Method: helical / : Morikawa M, Shigematsu H, Nitta R

EMDB-6781:
GDP-microtubule complexed with KIF5C in AMPPNP state
Method: helical / : Morikawa M, Shigematsu H, Nitta R

EMDB-6782:
GDP-microtubule complexed with KIF5C in ATP state
Method: helical / : Morikawa M, Shigematsu H, Nitta R

EMDB-6783:
GMPCPP-microtubule complexed with nucleotide-free KIF5C
Method: helical / : Morikawa M, Shigematsu H, Nitta R

PDB-5xxv:
GDP-microtubule complexed with KIF5C in AMPPNP state
Method: helical / : Morikawa M, Shigematsu H, Nitta R, Hirokawa N

EMDB-9538:
Kinesin-8 motor, KIF19A, in the nucleotide-free state complexed with GDP-taxol microtubule
Method: helical / : Morikawa M, Nitta R, Yajima H, Shigematsu H, Kikkawa M, Hirokawa N

PDB-5gsy:
Kinesin-8 motor, KIF19A, in the nucleotide-free state complexed with GDP-taxol microtubule
Method: helical / : Morikawa M, Nitta R, Yajima H, Shigematsu H, Kikkawa M, Hirokawa N

EMDB-5916:
Cryo-Electron Microscopy of Nucleotide-free Kinesin motor domain complexed with GMPCPP-microtubule
Method: single particle / : Morikawa M, Yajima H, Nitta R, Inoue S, Ogura T, Sato C, Hirokawa N

PDB-3j6h:
Nucleotide-free Kinesin motor domain complexed with GMPCPP-microtubule
Method: single particle / : Morikawa M, Yajima H, Nitta R, Inoue S, Ogura T, Sato C, Hirokawa N

EMDB-2697:
Cryo Electron Microscopy of GMPCPP-microtubules structure
Method: single particle / : Yajima H, Ogura T, Nitta R, Okada Y, Sato C, Hirokawa N

PDB-3j7i:
Structure of alpha- and beta- tubulin in GMPCPP-microtubules
Method: single particle / : Yajima H, Ogura T, Nitta R, Okada Y, Sato C, Hirokawa N

PDB-2hxf:
KIF1A head-microtubule complex structure in amppnp-form
Method: helical / : Kikkawa M, Hirokawa N

PDB-2hxh:
KIF1A head-microtubule complex structure in adp-form
Method: helical / : Kikkawa M, Hirokawa N

EMDB-1077:
Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.
Method: single particle / : Agrawal RK

PDB-1t1m:
Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome
Method: single particle / : Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J

PDB-1t1o:
Components of the control 70S ribosome to provide reference for the RRF binding site
Method: single particle / : Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J

PDB-1ia0:
KIF1A HEAD-MICROTUBULE COMPLEX STRUCTURE IN ATP-FORM
Method: helical / : Kikkawa M, Sablin EP, Okada Y, Yajima H, Fletterick RJ, Hirokawa N

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more