[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 48 items for (author: dal & peraro & m)

EMDB-52853:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

PDB-9ign:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

EMDB-51664:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

PDB-9gxj:
Aerolysin E254A/E258A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

EMDB-43349:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

PDB-8vlz:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

PDB-8vm4:
CryoEM structure of human S-OPA1 assembled on lipid membrane containing brominated cardiolipin in membrane-adjacent state
Method: helical / : Zuccaro KE, Aydin H

EMDB-39097:
Cryo-ET structure of huntingtin actin complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-39103:
Cryo-ET structure of huntingtin actin dimer complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

PDB-8yae:
Cryo-ET structure of huntingtin actin complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

PDB-8yao:
Cryo-ET structure of huntingtin actin dimer complex
Method: subtomogram averaging / : Kim J, Kim H, Fassler F, Hansen JM, Schur FKM, Song JJ

EMDB-50549:
Aerolysin Wildtype in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

EMDB-50562:
Aerolysin heptamer in membrane inserted form reconstituted in amphipoles.
Method: single particle / : Iacovache I, Zuber B

EMDB-50576:
Aerolysin Y221G - prepore
Method: single particle / : Iacovache I, Zuber B

EMDB-50578:
aerolysin WT pore in LMNG:CHS
Method: single particle / : Zuber B, Ioan I

EMDB-50601:
Aerolysin mutant K238A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

EMDB-50602:
Aerolysin double mutant K238A/K244A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

PDB-9fm6:
Aerolysin Wildtype in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

PDB-9fml:
Aerolysin heptamer in membrane inserted form reconstituted in amphipoles.
Method: single particle / : Iacovache I, Zuber B

PDB-9fmx:
Aerolysin Y221G - prepore
Method: single particle / : Iacovache I, Zuber B

PDB-9fnp:
Aerolysin mutant K238A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

PDB-9fnq:
Aerolysin double mutant K238A/K244A in styrene-maleic acid lipid particles
Method: single particle / : Anton JS, Bada Juarez JF, Marcaida MJ, Dal Peraro M

EMDB-42954:
ACAD11 D220A with 4-hydroxyvaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

EMDB-42955:
ACAD11 D753N with 4-phosphovaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

PDB-8v3u:
ACAD11 D220A with 4-hydroxyvaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

PDB-8v3v:
ACAD11 D753N with 4-phosphovaleryl-CoA
Method: single particle / : Zhang J, Bartlett A, Rashan E, Yuan P, Pagliarini D

EMDB-19117:
Cryo-EM structure of the R243C mutant of human Prolyl Endopeptidase-Like (PREPL) protein involved in Congenital myasthenic syndrome-22 (CMS22)
Method: single particle / : Theodoropoulou A, Cavani E, Antanasijevic A, Marcaida MJ, Dal Peraro M

PDB-8rfb:
Cryo-EM structure of the R243C mutant of human Prolyl Endopeptidase-Like (PREPL) protein involved in Congenital myasthenic syndrome-22 (CMS22)
Method: single particle / : Theodoropoulou A, Cavani E, Antanasijevic A, Marcaida MJ, Dal Peraro M

EMDB-26977:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-adjacent state
Method: helical / : Du Pont KE, Aydin H

EMDB-26984:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-distal state
Method: helical / : Du Pont KE, Aydin H

PDB-8ct1:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-adjacent state
Method: helical / : Du Pont KE, Aydin H

PDB-8ct9:
CryoEM structure of human S-OPA1 assembled on lipid membrane in membrane-distal state
Method: helical / : Du Pont KE, Aydin H

EMDB-25412:
Structure of the human COQ7:COQ9 complex by single-particle electron cryo-microscopy, unliganded state
Method: single particle / : Aydin H, Frost A

EMDB-25413:
Structure of the NADH-bound human COQ7:COQ9 complex by single-particle electron cryo-microscopy
Method: single particle / : Aydin H, Frost A

PDB-7ssp:
Structure of the human COQ7:COQ9 complex by single-particle electron cryo-microscopy, unliganded state
Method: single particle / : Aydin H, Frost A

PDB-7sss:
Structure of the NADH-bound human COQ7:COQ9 complex by single-particle electron cryo-microscopy
Method: single particle / : Aydin H, Frost A

EMDB-10793:
Cryo-EM structure of the Full-length disease type human Huntingtin
Method: single particle / : Jung T, Tamo G, Dal Perraro M, Hebert H, Song J

PDB-6yej:
Cryo-EM structure of the Full-length disease type human Huntingtin
Method: single particle / : Tame G, Jung T, Dal Perraro M, Hebert H, Song J

EMDB-4937:
Cryo-EM 3D map of normal Huntingtin
Method: single particle / : Jung T, Tamo G

EMDB-4944:
Cryo-EM 3D map of the N-terminal GFP tagged normal type Huntingtin
Method: single particle / : Jung T, Tamo G, Dal Perraro M, Hebert H, Song J

PDB-6rmh:
The Rigid-body refined model of the normal Huntingtin.
Method: single particle / : Jung T, Tamo G, Dal Perraro M, Hebert H, Song J

EMDB-8185:
aerolysin prepore cryo-EM map
Method: single particle / : Iacovache I, Zuber B

EMDB-8187:
aerolysin pore cryo-EM map
Method: single particle / : Iacovache I, Zuber B

EMDB-8188:
aerolysin post-prepore and quasipore cryo-EM maps.
Method: single particle / : Iacovache I, Zuber B

PDB-5jzh:
Cryo-EM structure of aerolysin prepore
Method: single particle / : Iacovache I, Zuber B

PDB-5jzt:
Cryo-EM structure of aerolysin pore in LMNG micelle
Method: single particle / : Iacovache I, Zuber B

PDB-5jzw:
Cryo-EM structures of aerolysin post-prepore and quasipore
Method: single particle / : Iacovache I, Zuber B

EMDB-5694:
Type III secretion system (Injectisome) of Yersinia enterocolitica in situ
Method: subtomogram averaging / : Kudryashev M, Stenta M, Schmelz S, Amstutz M, Wiesand U, Castano-Diez D, Degiacomi M, Muennich S, Bleck CKE, Kowal J, Diepold A, Heinz DW, Dal Peraro M, Cornelis GR, Stahlberg H

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more