[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 1,132 items for (author: dai & x)

EMDB-75946:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75947:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 1
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-75949:
In situ cryo-ET analysis of mitochondria and autophagosome contact in tauP301S Tg mouse cortical neurons Supplementary 2
Method: electron tomography / : Gonzalez CU, Jaber N

EMDB-65044:
Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-5.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

EMDB-65049:
Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-1
Method: single particle / : Jiang Y, Yu Z, Zheng Q, Li S

EMDB-66051:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies CT1-5.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

EMDB-66052:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies S309 and CT1-1.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

PDB-9wla:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies CT1-5.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

PDB-9wlb:
Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies S309 and CT1-1.
Method: single particle / : Jiang Y, Sun H, Zheng Q, Li S

EMDB-76979:
Cryo-ET of mitochondrial membrane in direct interaction with alpha-synuclein exhibiting membrane morphological distortion
Method: electron tomography / : Jaber N, Dai W

EMDB-76980:
Supplemental: irregularly shaped mitochondria interacting with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-76981:
Supplemental: alpha-synuclein oligomers on the surface of a mitochondrial membrane
Method: electron tomography / : Jaber N, Dai W

EMDB-76983:
Supplemental: mitochondria not associated with alpha-synuclein
Method: electron tomography / : Jaber N, Dai W

EMDB-56110:
Flat clathrin lattice on endosomes
Method: subtomogram averaging / : Gul M, Hakala M, Moparthi SB, Ganeva I, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A, Kudryashev M

EMDB-56112:
Cryo-electron tomogram of endosomes in HeLa cells
Method: electron tomography / : Hakala M, Moparthi SB, Ganeva I, Gul M, Bernat-Silvestre C, Marcuello C, Espadas J, Colom A, Kudryashev M, Kukulski W, Vassilopoulos S, Kaksonen M, Roux A

EMDB-62782:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l36:
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
Method: single particle / : Dai LH, He BY, Hu YM, Xu YH, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62778:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62780:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

EMDB-62861:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

PDB-9l2o:
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l2t:
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
Method: single particle / : Dai LH, Xu YH, Hu YM, He BY, Huang JP, Xie ZZ, Li H, Niu D, Guo RT, Chen CC

PDB-9l6p:
Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
Method: single particle / : Dai LH, Xu YH, Hu YM, Niu D, He BY, Huang JP, Xie ZZ, Li H, Guo RT, Chen CC

EMDB-61755:
Structure of ATD truncated glutamate receptor mGluD1 complexed with D-serine
Method: single particle / : Dai Z, Yin YX

PDB-9jrh:
Structure of ATD truncated glutamate receptor mGluD1 complexed with D-serine
Method: single particle / : Dai Z, Yin YX

EMDB-47973:
The prefusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

PDB-9efh:
The prefusion conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

EMDB-61757:
Structure of ATD truncated glutamate receptor mGluD1 complexed with GABA and Calcium
Method: single particle / : Dai Z, Yin YX

PDB-9jrj:
Structure of ATD truncated glutamate receptor mGluD1 complexed with GABA and Calcium
Method: single particle / : Dai Z, Yin YX

EMDB-61754:
Structure of ATD truncated glutamate receptor mGluD1
Method: single particle / : Dai Z, Yin YX

PDB-9jrg:
Structure of ATD truncated glutamate receptor mGluD1
Method: single particle / : Dai Z, Yin YX

EMDB-47988:
The deep-primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

PDB-9egg:
The deep-primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

EMDB-61751:
Structure of glutamate receptor mGluD1
Method: single particle / : Dai Z, Yin YX

PDB-9jrd:
Structure of glutamate receptor mGluD1
Method: single particle / : Dai Z, Yin YX

EMDB-64999:
The cryo-EM structure of human Piezo2-MDFIC2 complex (consensus map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65000:
The cryo-EM structure of human Piezo2-MDFIC2 complex (cap focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65001:
The cryo-EM structure of human Piezo2-MDFIC2 complex (blade focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65002:
The cryo-EM structure of human Piezo2-MDFIC complex (consensus map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65003:
The cryo-EM structure of human Piezo2-MDFIC complex (cap focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

EMDB-65004:
The cryo-EM structure of human Piezo2-MDFIC complex (blade focused map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Cox CD

PDB-9ved:
The cryo-EM structure of mouse Piezo1-MDFI complex
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

PDB-9vee:
The cryo-EM structure of human Piezo2-MDFIC2 complex (composite map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

PDB-9vef:
The cryo-EM structure of human Piezo2-MDFIC complex (composite map)
Method: single particle / : Zhang Y, Dai F, Zhou Z, Dai F, Cheng D, Ma X, Omidkhoda SF, Clarke J, Zhang H, Laden M, Guo Y, Li JV, Liu R, Wong ES, Zhang Y, Cox CD

EMDB-61752:
Structure of the A654C substituted ionotropic glutamate receptor mGluD1
Method: single particle / : Dai Z, Yin YX

PDB-9jre:
Structure of the A654C substituted ionotropic glutamate receptor mGluD1
Method: single particle / : Dai Z, Yin YX

EMDB-47978:
The primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

PDB-9efs:
The primed conformation of herpes simplex virus type 1 (HSV-1) glycoprotein B (gB) mutant R131F
Method: single particle / : Mou Z, Wang S, Dai X

EMDB-61753:
Structure of ionotropic glutamate receptor mGluD1 complexed with D-serine
Method: single particle / : Dai Z, Yin YX

PDB-9jrf:
Structure of ionotropic glutamate receptor mGluD1 complexed with D-serine
Method: single particle / : Dai Z, Yin YX

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more