[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 324 items for (author: chin & ja)

EMDB-48856:
70S Ribosome of Goslar infected WT E. coli
Method: subtomogram averaging / : Klusch N, Villa E

EMDB-48875:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-48876:
70S Ribosome of Goslar infected chmA KD E. coli
Method: subtomogram averaging / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49120:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49121:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 90 mpi
Method: electron tomography / : Hutchings J, Rodriguez ZK, Klusch N, Villa E

EMDB-49122:
In situ cryoET of an EPI vesicle in a Goslar infected chmA KD E. coli cell 30 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-49123:
In situ cryoET of an EPI vesicle in a Goslar infected WT E. coli cell 1 mpi
Method: electron tomography / : Klusch N, Villa E

EMDB-19761:
Cryo-EM structure of Pseudomonas aeruginosa recombinase A (RecA) in complex with ssDNA 72mer and ATPgS
Method: helical / : De Felice S, Vascon F, Huber ST, Grinzato A, Jakobi AJ, Cendron L

EMDB-19771:
Cryo-EM structure of Pseudomonas aeruginosa Recombinase A (RecA) in complex with LexAS125A mutant
Method: single particle / : De Felice S, Vascon F, Huber ST, Catalano C, Jakobi AJ, Cendron L

PDB-8s70:
Cryo-EM structure of Pseudomonas aeruginosa recombinase A (RecA) in complex with ssDNA 72mer and ATPgS
Method: helical / : De Felice S, Vascon F, Huber ST, Grinzato A, Jakobi AJ, Cendron L

PDB-8s7g:
Cryo-EM structure of Pseudomonas aeruginosa Recombinase A (RecA) in complex with LexAS125A mutant
Method: single particle / : De Felice S, Vascon F, Huber ST, Catalano C, Jakobi AJ, Cendron L

EMDB-45591:
Autoinhibited full-length LRRK2(I2020T) on microtubules with MLi-2
Method: subtomogram averaging / : Chen S, Villa E, Leschziner AE

PDB-9cho:
Autoinhibited full-length LRRK2(I2020T) on microtubules with MLi-2
Method: subtomogram averaging / : Chen S, Villa E, Leschziner AE

EMDB-47571:
Fully human monoclonal antibody targeting the cysteine-rich substrate-interacting region of ADAM17 on cancer cells.
Method: single particle / : Saha N, De La Cruz MJ, Goldgur Y, Nikolov DB

PDB-9e6k:
Fully human monoclonal antibody targeting the cysteine-rich substrate-interacting region of ADAM17 on cancer cells.
Method: single particle / : Saha N, De La Cruz MJ, Goldgur Y, Nikolov DB

EMDB-19078:
Saccharomyces cerevisiae Prp43 helicase in complex with Pxr1
Method: single particle / : Rabl J, Portugal Calisto D, Panse VG

PDB-8rdy:
Saccharomyces cerevisiae Prp43 helicase in complex with Pxr1
Method: single particle / : Rabl J, Portugal Calisto D, Panse VG

EMDB-46646:
HIV-1 BaL Env in complex with CD4 mimetic CJF-III-288 and 17b IgG
Method: subtomogram averaging / : Grunst MW

EMDB-45229:
In-cell Toxoplasma gondii nuclear pore complex cytoplasmic ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45230:
In-cell Toxoplasma gondii nuclear pore complex inner ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45231:
In-cell Toxoplasma gondii nuclear pore complex nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45232:
In-cell Toxoplasma gondii nuclear pore complex membrane focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45233:
In-cell Toxoplasma gondii nuclear pore complex lumenal ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45260:
In-cell Toxoplasma gondii symmetry-expanded nuclear pore complex consensus map
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-43667:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-43670:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, global refinement
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-43671:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, local refinement
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-43672:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

PDB-8vym:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

PDB-8vyn:
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) stabilized in a prefusion-like conformation in complex with 1G2 and 7H3, composite map (global and local) and model
Method: single particle / : Sponholtz MR, Byrne PO, McLellan JS

EMDB-46533:
Cryo-EM structure of CCR6 bound by SQA1 and OXM2
Method: single particle / : Wasilko DJ, Wu H

EMDB-46534:
Cryo-EM structure of CCR6 bound by SQA1 and OXM1
Method: single particle / : Wasilko DJ, Wu H

PDB-9d3e:
Cryo-EM structure of CCR6 bound by SQA1 and OXM2
Method: single particle / : Wasilko DJ, Wu H

PDB-9d3g:
Cryo-EM structure of CCR6 bound by SQA1 and OXM1
Method: single particle / : Wasilko DJ, Wu H

EMDB-42247:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

PDB-8uh6:
Degrader-induced complex between PTPN2 and CRBN-DDB1
Method: single particle / : Catalano C, Bratkowski M, Scapin G, Hao Q

EMDB-18570:
CryoEM structure of recombinant DeltaN7 alpha-synuclein in PBS
Method: helical / : Thacker D, Wilkinson M, Dewison KM, Ranson NA, Brockwell DJ, Radford SE

PDB-8qpz:
CryoEM structure of recombinant DeltaN7 alpha-synuclein in PBS
Method: helical / : Thacker D, Wilkinson M, Dewison KM, Ranson NA, Brockwell DJ, Radford SE

EMDB-44372:
In-cell Saccharomyces cerevisiae nuclear pore complex with single nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-44377:
In-cell Saccharomyces cerevisiae nuclear pore complex with double nuclear ring and basket
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-44379:
In-cell Mus musculus nuclear pore complex with nuclear basket
Method: subtomogram averaging / : Hutchings J, Singh D, Villa E

EMDB-44381:
In-cell Toxoplasma gondii nuclear pore complex
Method: subtomogram averaging / : Singh D, Hutchings J, Li Z, Guo Q, Villa E

EMDB-45197:
In-cell Saccharomyces cerevisiae symmetry-expanded nuclear pore complex with double nuclear ring and basket
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45198:
In-cell Saccharomyces cerevisiae symmetry-expanded nuclear pore complex with single nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45199:
In-cell Saccharomyces cerevisiae nuclear pore complex cytoplasmic ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45200:
In-cell Saccharomyces cerevisiae nuclear pore complex inner ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45201:
In-cell Saccharomyces cerevisiae nuclear pore complex single nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45202:
In-cell Saccharomyces cerevisiae nuclear pore complex double nuclear ring focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45203:
In-cell Saccharomyces cerevisiae nuclear pore complex nuclear basket focused refinement
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

EMDB-45204:
In-cell Saccharomyces cerevisiae nuclear pore complex membrane focused refinement for single nuclear ring
Method: subtomogram averaging / : Singh D, Hutchings J, Villa E

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more