[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 260 items for (author: baker & ah)

EMDB-53655:
Human Adenovirus D 10 Fiber Shaft by Focussed Refinement
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, T Young M, Parker AL, Bhella D

EMDB-53736:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

PDB-9r78:
Human Adenovirus D 10 Capsid Structure
Method: single particle / : Waraich K, Mundy RM, Bates EA, da Fonseca P, Morris E, Rizkallah PJ, Baker AT, Young MT, Parker AL, Bhella D

EMDB-53716:
Hexahistidine-tagged tobacco mosaic virus coat protein 3-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53717:
Hexahistidine-tagged tobacco mosaic virus coat protein 4-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53718:
Hexahistidine-tagged tobacco mosaic virus coat protein 5-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-53720:
Hexahistidine-tagged tobacco mosaic virus coat protein 6-layer disk
Method: single particle / : Biela AP, Abu-Baker I

EMDB-48424:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

PDB-9mni:
CGRP Receptor in complex with dC2_050
Method: single particle / : Cao J, Cary BP, Belousoff MJ, Wootten DL

EMDB-47031:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

EMDB-47041:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

EMDB-47043:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Method: single particle / : Bai XC

PDB-9dn6:
Insulin receptor bound with de novo designed agonist called "RF-405".
Method: single particle / : Bai XC

PDB-9dni:
Insulin receptor bound with de novo designed agonist called "S2-F1-S1"
Method: single particle / : Bai XC

PDB-9dnn:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Method: single particle / : Bai XC

EMDB-45207:
AP-3 bound to myristoylated Arf1 (Q71L)
Method: single particle / : Begley MC, Baker RW

EMDB-45208:
Human AP-3 dimer bound to myristoylated Arf1 (Q71L) and LAMP1 cargo on a lipid nanodisc
Method: single particle / : Begley MC, Baker RW

EMDB-45209:
AP-3 Arf1 dimeric interface, focused refinement
Method: single particle / : Begley MC, Baker RW

EMDB-45210:
AP-3 bound to myristoylated Arf1 and LAMPI on a lipid nanodisc; concensus refinement
Method: single particle / : Baker RW, Begley M

EMDB-45211:
AP-3 bound to myristoylated Arf1 and LAMPI on a lipid nanodisc; focus refinement 1
Method: single particle / : Baker RW, Begley M

EMDB-45212:
AP-3 bound to myristoylated Arf1 and LAMPI on a lipid nanodisc; focus refinement 2
Method: single particle / : Baker RW, Begley M

EMDB-45213:
AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map
Method: single particle / : Begley MC, Baker RW

EMDB-45214:
Structure of Human Adaptor Protein Complex AP-3 in the Apo State
Method: single particle / : Begley MC, Baker RW

PDB-9c58:
AP-3 bound to myristoylated Arf1 (Q71L)
Method: single particle / : Begley MC, Baker RW

PDB-9c59:
Human AP-3 dimer bound to myristoylated Arf1 (Q71L) and LAMP1 cargo on a lipid nanodisc
Method: single particle / : Begley MC, Baker RW

PDB-9c5a:
AP-3 Arf1 dimeric interface, focused refinement
Method: single particle / : Begley MC, Baker RW

PDB-9c5b:
AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map
Method: single particle / : Begley MC, Baker RW

PDB-9c5c:
Structure of Human Adaptor Protein Complex AP-3 in the Apo State
Method: single particle / : Begley MC, Baker RW

EMDB-42350:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

PDB-8uka:
Structure of amplified aSyn filament by using seed amplification assay (SAA) from MSA patient CSF.
Method: helical / : Banerjee V, Wang F, Baker ML, Serysheva II, Soto C

EMDB-28966:
CryoEM map of de novo designed oligomeric protein C4-71_6x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28967:
CryoEM map of de novo designed oligomeric protein C4-71_8x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28968:
CryoEM map of de novo designed oligomeric protein C6-71
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28969:
CryoEM map of de novo designed oligomeric protein C6-71_6x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28970:
CryoEM map of de novo designed oligomeric protein C6-71_8x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28971:
CryoEM map of de novo designed oligomeric protein C8-71_6x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28972:
CryoEM map of de novo designed oligomeric protein C8-71_8x
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28973:
CryoEM map of de novo designed oligomeric protein C4-81
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-28974:
CryoEM map of designed oligomeric protein C4-71
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert DC, Bhabha G

EMDB-40260:
CryoEM map of a de novo designed T=4 icosahedral nanocage hierarchically built from pseudosymmetric trimers; design Ico(T=4)-4
Method: single particle / : Borst AJ, Kibler RD, Lee S

EMDB-40267:
CryoEM map of a T=1 off-target state of design Ico(T=4)-4
Method: single particle / : Borst AJ, Kibler RD, Lee S

EMDB-40268:
CryoEM map of a de novo designed T=4 octahedral nanocage hierarchically built from pseudosymmetric trimers; design Oct(T=4)-3
Method: single particle / : Philomin A, Borst AJ, Kibler RD

EMDB-40269:
CryoEM map of a T=1 off-target state of design Oct(T=4)-3
Method: single particle / : Philomin A, Borst AJ

EMDB-41907:
Computationally Designed, Expandable O4 Octahedral Handshake Nanocage
Method: single particle / : Weidle C, Borst A

EMDB-42031:
Computational Designed Nanocage O43_129_+8
Method: single particle / : Weidle C, Kibler RD

EMDB-43318:
Twistless helix 12 repeat ring design R12B
Method: single particle / : Calise SJ, Kollman JM

EMDB-29974:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

EMDB-41364:
CryoEM Structure of a Computationally Designed T3 Tetrahedral Nanocage
Method: single particle / : Weidle C, Borst AJ

EMDB-42906:
Computational Designed Nanocage O43_129
Method: single particle / : Weidle C, Kibler RD

EMDB-42944:
Computational Designed Nanocage O43_129_+4
Method: single particle / : Carr KD, Weidle C, Borst AJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more