[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 113 items for (author: akita & f)

EMDB-62656:
Cryo-EM structure of PSI-ACPI from Rhodomonas sp. NIES-2332 at 2.08 angstroms resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

EMDB-62717:
Cryo-EM structure of PSI-11ACPIs from Rhodomonas sp. NIES-2332 at 2.14 angstrom resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

EMDB-62846:
cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332
Method: single particle / : Yonehara N, Akita F, Shen JR

PDB-9kz9:
Cryo-EM structure of PSI-ACPI from Rhodomonas sp. NIES-2332 at 2.08 angstroms resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

PDB-9l0k:
Cryo-EM structure of PSI-11ACPIs from Rhodomonas sp. NIES-2332 at 2.14 angstrom resolution
Method: single particle / : Zhang WY, Akita F, Shen JR

PDB-9l5v:
cryo-EM structure of PSII-ACPII from Rhodomonas sp. NIES-2332
Method: single particle / : Yonehara N, Akita F, Shen JR

EMDB-62499:
PSII-FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

EMDB-62790:
PSII-6 FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

PDB-9kqb:
PSII-FCPII supercomplex from haptophyte Chrysotila roscoffensis
Method: single particle / : La Rocca R, Kato K, Tsai PC, Nakajima Y, Akita F, Shen JR

EMDB-63071:
SARS-CoV-2 spike glycoprotein trimer in prefusion form (1-RBD up state)
Method: single particle / : Fukuhara H, Anraku Y, Kita S, Maenaka K

EMDB-62511:
PSI-LHCI supercomplex binding with 10 Lhcas from C. subellipsoidea
Method: single particle / : Tsai PC, Kato K, Shen JR, Akita F

EMDB-62512:
PSI-LHCI supercomplex binding with 8 Lhcas from C. subellipsoidea
Method: single particle / : Tsai PC, Kato K, Shen JR, Akita F

PDB-9kqp:
PSI-LHCI supercomplex binding with 10 Lhcas from C. subellipsoidea
Method: single particle / : Tsai PC, Kato K, Shen JR, Akita F

PDB-9kqq:
PSI-LHCI supercomplex binding with 8 Lhcas from C. subellipsoidea
Method: single particle / : Tsai PC, Kato K, Shen JR, Akita F

EMDB-19884:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epr:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Gi heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19882:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-19883:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epp:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

PDB-9epq:
Cryo-EM Structure of Jumping Spider Rhodopsin-1 bound to a Giq heterotrimer
Method: single particle / : Tejero O, Pamula F, Koyanagi M, Nagata T, Afanasyev P, Das I, Deupi X, Sheves M, Terakita A, Schertler GFX, Rodrigues MJ, Tsai CJ

EMDB-18377:
Focused map for CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-18378:
Focused map for CSA-DDB1-DDA1 (map 2)
Method: single particle / : Lee SH, Sixma TK

EMDB-18380:
Focused map for UVSSA(VHS)-CSA-DDB1(BPA/BPC)-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-18398:
CryoEM structure of UVSSA(VHS)-CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-18413:
Consensus map of UVSSA(VHS)-CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

PDB-8qh5:
CryoEM structure of UVSSA(VHS)-CSA-DDB1-DDA1
Method: single particle / : Lee SH, Sixma TK

EMDB-17171:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17173:
CTE typeIII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17174:
CTE typeII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17175:
TMEM106B Fold1-s filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17176:
TMEM106B Fold I-d filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17177:
Ab typeII filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17178:
CTE typeI tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17179:
TypeII tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17180:
CTE typeIII tau filament
Method: helical / : Tetter S, Qi C, Ryskeldi-Falcon B, Scheres SHW, Goedert M

EMDB-17181:
PHF tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ot6:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ot9:
CTE typeIII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otc:
CTE typeII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otd:
TMEM106B Fold1-s filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ote:
TMEM106B Fold I-d filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otf:
Ab typeII filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otg:
CTE typeI tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8oth:
TypeII tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8oti:
CTE typeIII tau filament
Method: helical / : Tetter S, Qi C, Ryskeldi-Falcon B, Scheres SHW, Goedert M

PDB-8otj:
PHF tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-34981:
Cryo-EM structure of human NTCP-myr-preS1-YN9048Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

EMDB-34982:
Cryo-EM structure of human NTCP-myr-preS1-YN9016Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

PDB-8hrx:
Cryo-EM structure of human NTCP-myr-preS1-YN9048Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

PDB-8hry:
Cryo-EM structure of human NTCP-myr-preS1-YN9016Fab complex
Method: single particle / : Asami J, Shimizu T, Ohto U

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more