[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 2,520 items for (author: thomas & k)

EMDB-44123:
Cryo-EM density of GluK2 amino-terminal domain (GluK2-ATD) from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44126:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44127:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-42970:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

PDB-8v4f:
Model and map from local refinement of a CAB-A17 - Omicron Ba.1 spike complex
Method: single particle / : Hallberg BM, Das H

EMDB-17449:
S. cerevisiae nexus-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17458:
S. cerevisiae ssDNA-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17459:
S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-17460:
S. cerevisiae sCMGE with N-ter Mcm10 density
Method: single particle / : Henrikus SS, Willhoft O

PDB-8p5e:
S. cerevisiae nexus-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

PDB-8p62:
S. cerevisiae ssDNA-sCMGE after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

PDB-8p63:
S. cerevisiae consensus-sCMGE on ssDNA after DNA replication initiation
Method: single particle / : Henrikus SS, Willhoft O

EMDB-19066:
TREK2 in OGNG/CHS detergent micelle with biparatopic inhibitory nanobody Nb6158
Method: single particle / : Smith KHM, Tucker SJ

EMDB-19854:
PHF type tau filament from R406W mutant
Method: helical / : Qi C, Scheres SHW, Michel G

EMDB-19855:
PHF type tau filament from in vitro V337M mutant
Method: helical / : Qi C, Lovestam S, Scheres SHW, Michel G

PDB-9eog:
PHF type tau filament from R406W mutant
Method: helical / : Qi C, Scheres SHW, Michel G

PDB-9eoh:
PHF type tau filament from in vitro V337M mutant
Method: helical / : Qi C, Lovestam S, Scheres SHW, Michel G

EMDB-41271:
Consensus map of 96nm repeat of human respiratory doublet microtubule, RS1-2 region
Method: single particle / : Gui M, Brown A

EMDB-44124:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44125:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44128:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44129:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44130:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44131:
Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-44132:
Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b33:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b34:
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b35:
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b36:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two concanavalin A dimers. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b37:
Open state of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one concanavalin A dimer. Composite map.
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b38:
Kainate receptor GluK2 in complex with agonist glutamate with pseudo 4-fold symmetrical ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

PDB-9b39:
Kainate receptor GluK2 in complex with agonist glutamate with asymmetric ligand-binding domain layer
Method: single particle / : Nadezhdin KD, Gangwar SP, Sobolevsky AI

EMDB-19798:
human PLD3 homodimer structure
Method: single particle / : Lammens K

PDB-8s86:
human PLD3 homodimer structure
Method: single particle / : Lammens K

EMDB-18639:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

EMDB-18649:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

EMDB-19002:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8qsq:
Locally refined SARS-CoV-2 BA-2.86 Spike receptor binding domain (RBD) complexed with angiotensin converting enzyme 2 (ACE2)
Method: single particle / : Ren J, Stuart DI, Duyvesteyn HME

PDB-8qtd:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Method: single particle / : Ren J, Duyvesteyn HME, Stuart DI

PDB-8r8k:
XBB-4 Fab in complex with SARS-CoV-2 BA.2.12.1 Spike Glycoprotein
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-43683:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-43684:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzn:
Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

PDB-8vzo:
Cryo-EM structure of FLVCR2 in the outward-facing state with choline bound
Method: single particle / : Cater RJ, Mancia F

EMDB-41373:
E. coli MraY mutant-T23P
Method: single particle / : Orta AK, Li YE, Clemons WM

PDB-8tlu:
E. coli MraY mutant-T23P
Method: single particle / : Orta AK, Li YE, Clemons WM

EMDB-43751:
TRPM7 structure in complex with anticancer agent CCT128930 in closed state
Method: single particle / : Nadezhdin KD, Sobolevsky AI

PDB-8w2l:
TRPM7 structure in complex with anticancer agent CCT128930 in closed state
Method: single particle / : Nadezhdin KD, Sobolevsky AI

EMDB-41151:
CryoEM structure of nucleotide-free form of the nitrogenase iron protein from A. vinelandii
Method: single particle / : Warmack RA, Rees DC

PDB-8tc3:
CryoEM structure of nucleotide-free form of the nitrogenase iron protein from A. vinelandii
Method: single particle / : Warmack RA, Rees DC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more