[English] 日本語
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 72 items for (author: chou & ck)

EMDB-53511:
SpCas9 with computationally designed SpCas9_b10 binder
Method: single particle / : Pacesa M, Nickel L, Correia BE

EMDB-50336:
Cryo-EM structure of the ternary DARPin NY_1/HLA-A0201/NY-ESO1 complex.
Method: single particle / : Schulte T, Wallden K, Carroni M, Sandalova T, Walser M, Mueller S, Venetz N, Achour A

EMDB-53510:
SpCas9 with computationally designed SpCas9_b3 binder
Method: single particle / : Pacesa M, Nickel L, Correia BE

EMDB-19065:
Telomeric RAP1:DNA-PK complex
Method: single particle / : Eickhoff P, Fisher CEL, Inian O, Guettler S, Douglas ME

EMDB-19245:
Telomeric RAP1:DNA-PK complex consensus map
Method: single particle / : Eickhoff P, Fisher CEL, Inian O, Guettler S, Douglas ME

EMDB-19249:
RAP1:KU local refinement of telomeric RAP1:DNA-PK complex
Method: single particle / : Eickhoff P, Fisher CEL, Inian O, Guettler S, Douglas ME

EMDB-19252:
DNA-PKcs local refinement of telomeric RAP1:DNA-PK complex
Method: single particle / : Eickhoff P, Fisher CEL, Inian O, Guettler S, Douglas ME

PDB-8rd4:
Telomeric RAP1:DNA-PK complex
Method: single particle / : Eickhoff P, Fisher CEL, Inian O, Guettler S, Douglas ME

EMDB-42186:
Cryo-EM structure of alpha-Klotho
Method: single particle / : Schnicker NJ, Xu Z, Mohammad A, Gakhar L, Huang CL

PDB-8uf8:
Cryo-EM structure of alpha-Klotho
Method: single particle / : Schnicker NJ, Xu Z, Mohammad A, Gakhar L, Huang CL

EMDB-41452:
Cryo-EM structure of monomeric alpha-Klotho
Method: single particle / : Schnicker NJ, Xu Z, Mohammad A, Gakhar L, Huang CL

PDB-8toh:
Cryo-EM structure of monomeric alpha-Klotho
Method: single particle / : Schnicker NJ, Xu Z, Mohammad A, Gakhar L, Huang CL

PDB-8swf:
Cryo-EM structure of NLRP3 open octamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

PDB-8swk:
Cryo-EM structure of NLRP3 closed hexamer
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

PDB-8sxn:
Structure of NLRP3 and NEK7 complex
Method: single particle / : Yu X, Matico RE, Miller R, Schoubroeck BV, Grauwen K, Suarez J, Pietrak B, Haloi N, Yin Y, Tresadern GJ, Perez-Benito L, Lindahl E, Bottelbergs A, Oehlrich D, Opdenbosch NV, Sharma S

EMDB-27593:
The structure of S. epidermidis Cas10-Csm bound to target RNA
Method: single particle / : Paraan M, Stagg SM, Dunkle JA

EMDB-27762:
318 kDa Cas10-Csm effector complex bound to cognate target RNA
Method: single particle / : Paraan M, Stagg SM, Dunkle JA

PDB-8do6:
The structure of S. epidermidis Cas10-Csm bound to target RNA
Method: single particle / : Paraan M, Stagg SM, Dunkle JA

EMDB-29454:
Structure of Covid Spike variant deltaN135 in fully closed form
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

EMDB-29455:
Structure of Covid Spike variant deltaN135 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

EMDB-29456:
Structure of Covid Spike variant deltaN25 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu7:
Structure of Covid Spike variant deltaN135 in fully closed form
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu8:
Structure of Covid Spike variant deltaN135 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu9:
Structure of Covid Spike variant deltaN25 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

EMDB-23949:
The insulin receptor ectodomain in complex with a venom hybrid insulin analog - "head" region
Method: single particle / : Blakely AD, Xiong X

EMDB-23950:
The insulin receptor ectodomain in complex with four venom hybrid insulins - symmetric conformation
Method: single particle / : Blakely AD, Xiong X

EMDB-23951:
The insulin receptor ectodomain in complex with three venom hybrid insulin molecules - asymmetric conformation
Method: single particle / : Blakely AD, Xiong X

PDB-7mqo:
The insulin receptor ectodomain in complex with a venom hybrid insulin analog - "head" region
Method: single particle / : Blakely AD, Xiong X, Kim JH, Menting J, Schafer IB, Schubert HL, Agrawal R, Gutmann T, Delaine C, Zhang Y, Artik GO, Merriman A, Eckert D, Lawrence MC, Coskun U, Fisher SJ, Forbes BE, Safavi-Hemami H, Hill CP, Chou DHC

PDB-7mqr:
The insulin receptor ectodomain in complex with four venom hybrid insulins - symmetric conformation
Method: single particle / : Blakely AD, Xiong X, Kim JH, Menting J, Schafer IB, Schubert HL, Agrawal R, Gutmann T, Delaine C, Zhang Y, Artik GO, Merriman A, Eckert D, Lawrence MC, Coskun U, Fisher SJ, Forbes BE, Safavi-Hemami H, Hill CP, Chou DHC

PDB-7mqs:
The insulin receptor ectodomain in complex with three venom hybrid insulin molecules - asymmetric conformation
Method: single particle / : Blakely AD, Xiong X, Kim JH, Menting J, Schafer IB, Schubert HL, Agrawal R, Gutmann T, Delaine C, Zhang Y, Artik GO, Merriman A, Eckert D, Lawrence MC, Coskun U, Fisher SJ, Forbes BE, Safavi-Hemami H, Hill CP, Chou DHC

EMDB-23717:
SARS-CoV-2 S-NTD + Fab CM25
Method: single particle / : Johnson NV, Mclellan JS

PDB-7m8j:
SARS-CoV-2 S-NTD + Fab CM25
Method: single particle / : Johnson NV, Mclellan JS

EMDB-22490:
Structure of human TRPA1 in complex with antagonist compound 21
Method: single particle / : Rohou A, Rouge L, Chen H

PDB-7jup:
Structure of human TRPA1 in complex with antagonist compound 21
Method: single particle / : Rohou A, Rouge L

EMDB-23211:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

EMDB-23215:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

PDB-7l7f:
Cryo-EM structure of human ACE2 receptor bound to protein encoded by vaccine candidate BNT162b1
Method: single particle / : Lees JA, Han S

PDB-7l7k:
Cryo-EM structure of protein encoded by vaccine candidate BNT162b2
Method: single particle / : Lees JA, Han S

EMDB-22308:
EPYC1(49-72)-bound Rubisco
Method: single particle / : Chou H, Matthies D, He S, Jonikas MC, Yu Z

EMDB-22401:
Rubisco at apo state
Method: single particle / : Chou H, Matthies D, He S, Jonikas MC, Yu Z

EMDB-22462:
EPYC1(106-135) peptide-bound Rubisco
Method: single particle / : Chou H, Matthies D, He S, Jonikas MC, Yu Z

PDB-7jfo:
EPYC1(49-72)-bound Rubisco
Method: single particle / : Matthies D, Jonikas MC, He S

PDB-7jn4:
Rubisco in the apo state
Method: single particle / : Matthies D, Jonikas MC, He S

PDB-7jsx:
EPYC1(106-135) peptide-bound Rubisco
Method: single particle / : Matthies D, He S, Jonikas MC

EMDB-20640:
PmtCD peptide toxin ABC exporter in nucleotide free (apo) conformation
Method: single particle / : Zeytuni N, Strynadka NCJ, Yu Z, Chou HT

EMDB-22194:
PmtCD in peptidisc
Method: single particle / : Zeytuni N, Hu J, Worrall LJ, Strynadka NCJ

EMDB-22210:
PmtCD ABC exporter without the basket domain at C2 symmetry
Method: single particle / : Zeytuni N, Strynadka NJC, Hu J, Worrall LJ

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more