-Browse 3DEM data
-Recently released data
All new data for the week /
Advanced search
Q: When the data are updated?-
Recent 3DEM papers
-In situ structural mechanism of epothilone-B-induced CNS axon regeneration.
Nature, Year 2025
Satish Bodakuntla / Kenichiro Taira / Yurika Yamada / Pelayo Alvarez-Brecht / A King Cada / Nirakar Basnet / Rui Zhang / Antonio Martinez-Sanchez / Christian Biertümpfel / Naoko Mizuno
Methods: EM (helical sym.) / EM (tomography) / EM (subtomogram averaging)
-Noncanonical agonist-dependent and -independent arrestin recruitment of GPR1.
Science, Vol. 390, Issue 6775, Page eadt8794, Year 2025
Heng Cai / Xiaowen Lin / Lechen Zhao / Maozhou He / Jie Yu / Bingjie Zhang / Yuandi Ma / Xiaohua Chang / Yuxuan Tang / Tianyu Luo ...Heng Cai / Xiaowen Lin / Lechen Zhao / Maozhou He / Jie Yu / Bingjie Zhang / Yuandi Ma / Xiaohua Chang / Yuxuan Tang / Tianyu Luo / Jie Jiang / Mengna Ma / Wenqi Song / Limin Ma / Xiaojing Chu / Cuiying Yi / Kun Chen / Shuo Han / Cen Xie / Wenqing Shui / Qiang Zhao / Ya Zhu / Beili Wu
Methods: EM (single particle)
+Structural basis of regulated N-glycosylation at the secretory translocon.
+Drug-bound outward-facing conformation of a heterodimeric ABC exporter suggests a putative mechanism of drug translocation.
+Structure of the D1-Val185Asn mutated photosystem II complex with slow O-O bond formation reveals changes in the Cl1 water channel.
-
About EM Navigator
-News
-Feb 9, 2022. New format data for meta-information of EMDB entries
New format data for meta-information of EMDB entries
- Version 3 of the EMDB header file is now the official format.
- The previous official version 1.9 will be removed from the archive.
Related info.:
EMDB header
External links:
wwPDB to switch to version 3 of the EMDB data model
-Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels
Nobel Prize for mechanically activated and temperature-gated ion channels
- The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
- EM Navigator can help to find cryo-EM structure data by both pioneers.
External links:
The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org /
Structure data by Ardem Patapoutian /
Structure data by David Julius
+Aug 12, 2020. Covid-19 info
+Mar 5, 2020. Novel coronavirus structure data
+Jul 5, 2019. Downlodablable text data
-EM Navigator
3D electron microscopy data browser
- EM Navigator is a browser for 3D electron microscopy (3D-EM) data of biological molecules and assemblies.
- It provides EMDB-PDB cross-search, statistical information, and links to similar structures.
- You can easily check the latest EM structural data and structural papers.
Related info.:
EMDB /
PDB /
PDBj /
Q: What are the data sources of EM Navigator? /
EMN Search /
EMN Papers /
EMN Gallery /
EMN Statistics /
Changes in new EM Navigator and Yorodumi
Movie
Controller
Structure viewers




























































































