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Yorodumi- EMDB-72734: The structure of the cardiac native cross bridge in the rigor sta... -
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Basic information
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| Title | The structure of the cardiac native cross bridge in the rigor state, myosin heads bound to actin molecules 5 and 6. | |||||||||
Map data | map | |||||||||
Sample |
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Keywords | cardiac myosin / tropomyosin / thin filament / troponin / MOTOR PROTEIN | |||||||||
| Function / homology | Function and homology informationRHOB GTPase cycle / Striated Muscle Contraction / RHOA GTPase cycle / Regulation of CDH1 Function / Formation of the dystrophin-glycoprotein complex (DGC) / Activation of STAT3 by cadherin engagement / regulation of striated muscle contraction / regulation of muscle filament sliding speed / troponin T binding / cardiac Troponin complex ...RHOB GTPase cycle / Striated Muscle Contraction / RHOA GTPase cycle / Regulation of CDH1 Function / Formation of the dystrophin-glycoprotein complex (DGC) / Activation of STAT3 by cadherin engagement / regulation of striated muscle contraction / regulation of muscle filament sliding speed / troponin T binding / cardiac Troponin complex / regulation of the force of heart contraction / troponin complex / actin-myosin filament sliding / regulation of muscle contraction / adult heart development / myosin filament / muscle filament sliding / myosin II complex / I band / cardiac muscle cell contraction / heart contraction / microfilament motor activity / ventricular cardiac muscle tissue morphogenesis / myosin binding / A band / troponin I binding / mesenchyme migration / myofibril / cytoskeletal motor activity / actin monomer binding / cardiac muscle contraction / skeletal muscle contraction / actin filament organization / sarcomere / filopodium / actin filament / structural constituent of cytoskeleton / calcium-dependent protein binding / actin filament binding / actin cytoskeleton / lamellipodium / cell body / calmodulin binding / protein heterodimerization activity / positive regulation of gene expression / calcium ion binding / protein homodimerization activity / ATP binding / identical protein binding / cytosol / cytoplasm Similarity search - Function | |||||||||
| Biological species | ![]() | |||||||||
| Method | single particle reconstruction / cryo EM / Resolution: 4.63 Å | |||||||||
Authors | Galkin VE / Risi CM | |||||||||
| Funding support | United States, 2 items
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Citation | Journal: Sci Adv / Year: 2026Title: The structure of the native cardiac crossbridge in the rigor state. Authors: Cristina M Risi / Tyler Nguyen / Betty Belknap / Howard D White / Jose R Pinto / Prescott B Chase / Vitold E Galkin / ![]() Abstract: Cardiac contraction is driven by double-headed myosin cycling on cardiac thin filaments, where troponin-tropomyosin regulates myosin access to actin. Prior high-resolution structural studies used a ...Cardiac contraction is driven by double-headed myosin cycling on cardiac thin filaments, where troponin-tropomyosin regulates myosin access to actin. Prior high-resolution structural studies used a single-headed myosin bound to bare actin, thereby limiting insight into coordination between myosin heads and the influence of troponin-tropomyosin on actomyosin interactions. Here, we report a high-resolution structure of the native cardiac rigor cross-bridge formed by heavy meromyosin bound to the thin filament. We show that direct communication between the two bound heads, uneven interactions between the heads and tropomyosin, and spatial constraints imposed by troponin govern myosin placement along the thin filament. Additionally, the two heads display non-equivalent motor-light chain interactions, yielding distinct lever-arm conformations indicative of asymmetric intramolecular strain. Together, these findings provide a structural framework for how the two myosin heads coordinate and how the components of the thin filament are integrated into force generation by active cross-bridges. | |||||||||
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Structure visualization
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Downloads & links
-EMDB archive
| Map data | emd_72734.map.gz | 9.6 MB | EMDB map data format | |
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| Header (meta data) | emd-72734-v30.xml emd-72734.xml | 33.2 KB 33.2 KB | Display Display | EMDB header |
| FSC (resolution estimation) | emd_72734_fsc.xml | 14 KB | Display | FSC data file |
| Images | emd_72734.png | 115.3 KB | ||
| Filedesc metadata | emd-72734.cif.gz | 9.3 KB | ||
| Others | emd_72734_half_map_1.map.gz emd_72734_half_map_2.map.gz | 187.7 MB 187.7 MB | ||
| Archive directory | https://data.pdbj.org/pub/emdb/structures/EMD-72734 ftp://data.pdbj.org/pub/emdb/structures/EMD-72734 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 9yaqMC ![]() 9ya8C ![]() 9yjpC ![]() 9yk9C ![]() 9yknC M: atomic model generated by this map C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Links
| EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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| Related items in Molecule of the Month |
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Map
| File | Download / File: emd_72734.map.gz / Format: CCP4 / Size: 236.9 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||
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| Annotation | map | ||||||||||||||||||||||||||||||||||||
| Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||
| Voxel size | X=Y=Z: 1.356 Å | ||||||||||||||||||||||||||||||||||||
| Density |
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| Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||
| Details | EMDB XML:
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-Supplemental data
-Half map: half map 1
| File | emd_72734_half_map_1.map | ||||||||||||
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| Annotation | half map 1 | ||||||||||||
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| Density Histograms |
-Half map: half map 2
| File | emd_72734_half_map_2.map | ||||||||||||
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| Annotation | half map 2 | ||||||||||||
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| Density Histograms |
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Sample components
+Entire : complex of heavy meromyosin bound to cardiac thin filament
+Supramolecule #1: complex of heavy meromyosin bound to cardiac thin filament
+Macromolecule #1: Actin, alpha cardiac muscle 1
+Macromolecule #2: Tropomyosin alpha-1 chain
+Macromolecule #3: Troponin T2, cardiac type
+Macromolecule #4: Myosin-7
+Macromolecule #5: Myosin light chain 3
+Macromolecule #6: Troponin C, slow skeletal and cardiac muscles
+Macromolecule #7: Troponin I, cardiac muscle
+Macromolecule #8: ADENOSINE-5'-DIPHOSPHATE
+Macromolecule #9: MAGNESIUM ION
+Macromolecule #10: CALCIUM ION
-Experimental details
-Structure determination
| Method | cryo EM |
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Processing | single particle reconstruction |
| Aggregation state | filament |
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Sample preparation
| Buffer | pH: 7.5 |
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| Grid | Model: EMS Lacey Carbon / Material: COPPER / Mesh: 300 / Support film - Material: CARBON / Support film - topology: LACEY / Pretreatment - Type: GLOW DISCHARGE / Pretreatment - Time: 45 sec. |
| Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 278 K / Instrument: FEI VITROBOT MARK IV |
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Electron microscopy
| Microscope | TFS KRIOS |
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| Image recording | Film or detector model: GATAN K3 (6k x 4k) / Number grids imaged: 10 / Average electron dose: 34.0 e/Å2 Details: Images were collected in a movie mode, 40 frames with the dose of 0.85 e/A2 per frame |
| Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
| Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 3.5 µm / Nominal defocus min: 0.5 µm |
| Sample stage | Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER / Cooling holder cryogen: NITROGEN |
| Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
-Atomic model buiding 1
| Initial model |
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| Refinement | Space: REAL / Protocol: FLEXIBLE FIT / Overall B value: 100 / Target criteria: cross-correlation | ||||||||||||
| Output model | ![]() PDB-9yaq: |
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About Yorodumi



Keywords
Authors
United States, 2 items
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FIELD EMISSION GUN






