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NMR solution structure of Ca2+-loaded calbindin D28K
Descriptor:	Calbindin
Authors:	Kojetin, D.J, Venters, R.A, Kordys, D.R, Thompson, R.J, Kumar, R, Cavanagh, J.
Deposit date:	2005-11-18
Release date:	2006-07-04
Last modified:	2024-05-29
Method:	SOLUTION NMR
Cite:	Structure, binding interface and hydrophobic transitions of Ca(2+)-loaded calbindin-D(28K). Nat.Struct.Mol.Biol., 13, 2006

2G9B

NMR solution structure of CA2+-loaded calbindin D28K
Descriptor:	Calbindin
Authors:	Kojetin, D.J, Venters, R.A, Kordys, D.R, Thompson, R.J, Kumar, R, Cavanagh, J.
Deposit date:	2006-03-06
Release date:	2006-07-04
Last modified:	2024-05-29
Method:	SOLUTION NMR
Cite:	Structure, binding interface and hydrophobic transitions of Ca(2+)-loaded calbindin-D(28K). Nat.Struct.Mol.Biol., 13, 2006

2K77

NMR solution structure of the Bacillus subtilis ClpC N-domain
Descriptor:	Negative regulator of genetic competence clpC/mecB
Authors:	Kojetin, D.J, McLaughlin, P.D, Thompson, R.J, Rance, M, Cavanagh, J.
Deposit date:	2008-08-04
Release date:	2009-04-28
Last modified:	2024-05-08
Method:	SOLUTION NMR
Cite:	Structural and motional contributions of the Bacillus subtilis ClpC N-domain to adaptor protein interactions. J.Mol.Biol., 387, 2009

4ZO1

Crystal Structure of the T3-bound TR-beta Ligand-binding Domain in complex with RXR-alpha
Descriptor:	3,5,3'TRIIODOTHYRONINE, Nuclear receptor coactivator 2, Retinoic acid receptor RXR-alpha, ...
Authors:	Bruning, J.B, Kojetin, D.J, Matta-Camacho, E, Hughes, T.S, Srinivasan, S, Nwachukwu, J.C, Cavett, V, Nowak, J, Chalmers, M.J, Marciano, D.P, Kamenecka, T.M, Rance, M, Shulman, A.I, Mangelsdorf, D.J, Griffin, P.R, Nettles, K.W.
Deposit date:	2015-05-05
Release date:	2015-09-02
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (3.221 Å)
Cite:	Structural mechanism for signal transduction in RXR nuclear receptor heterodimers. Nat Commun, 6, 2015

6PDZ

Crystal structure of PPARgamma ligand binding domain in complex with SMRT peptide and inverse agonist T0070907
Descriptor:	2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, Nuclear receptor corepressor 2, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2019-06-19
Release date:	2020-03-04
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	A molecular switch regulating transcriptional repression and activation of PPAR gamma. Nat Commun, 11, 2020

7JQG

Crystal structure of human PPARgamma ligand binding domain Y473E mutant in complex with GW1929
Descriptor:	(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2020-08-10
Release date:	2021-03-03
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.15 Å)
Cite:	Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021

6MD4

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Rosiglitazone and Oleic acid
Descriptor:	2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL), OLEIC ACID, ...
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2018-09-03
Release date:	2019-01-09
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.24 Å)
Cite:	Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife, 7, 2018

6MD1

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and Oleic acid
Descriptor:	2-chloro-5-nitro-N-phenylbenzamide, OLEIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2018-09-03
Release date:	2019-01-09
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife, 7, 2018

6MCZ

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Arachidonic Acid
Descriptor:	ARACHIDONIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2018-09-03
Release date:	2019-01-09
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife, 7, 2018

6MD2

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and Arachidonic acid
Descriptor:	2-chloro-5-nitro-N-phenylbenzamide, ARACHIDONIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2018-09-03
Release date:	2019-01-09
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife, 7, 2018

6MD0

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with Oleic Acid
Descriptor:	OLEIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2018-09-03
Release date:	2019-01-09
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife, 7, 2018

2RO5

RDC-refined solution structure of the N-terminal DNA recognition domain of the Bacillus subtilis transition-state regulator SpoVT
Descriptor:	Stage V sporulation protein T
Authors:	Sullivan, D.M, Bobay, B.G, Kojetin, D.J, Thompson, R.J, Rance, M, Strauch, M.A, Cavanagh, J.
Deposit date:	2008-03-08
Release date:	2008-11-11
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	Insights into the nature of DNA binding of AbrB-like transcription factors Structure, 16, 2008

8ZFN

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and BVT.13
Descriptor:	2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID, 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2024-05-08
Release date:	2024-08-07
Method:	X-RAY DIFFRACTION (2.54 Å)
Cite:	Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife, 2024

8ZFS

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and MRL24
Descriptor:	(2S)-2-(3-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID, 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2024-05-08
Release date:	2024-08-07
Method:	X-RAY DIFFRACTION (2.56 Å)
Cite:	Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife, 2024

8ZFQ

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and BVT.13
Descriptor:	2-[(2,4-DICHLOROBENZOYL)AMINO]-5-(PYRIMIDIN-2-YLOXY)BENZOIC ACID, 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2024-05-08
Release date:	2024-08-07
Method:	X-RAY DIFFRACTION (2.49 Å)
Cite:	Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife, 2024

8ZFO

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and nTZDpa
Descriptor:	2-chloro-5-nitro-N-phenylbenzamide, 5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2024-05-08
Release date:	2024-08-07
Method:	X-RAY DIFFRACTION (3.15 Å)
Cite:	Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife, 2024

8ZFR

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and nTZDpa
Descriptor:	2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, 5-CHLORO-1-(4-CHLOROBENZYL)-3-(PHENYLTHIO)-1H-INDOLE-2-CARBOXYLIC ACID, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2024-05-08
Release date:	2024-08-07
Method:	X-RAY DIFFRACTION (2.73 Å)
Cite:	Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife, 2024

8ZFP

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and MRL24
Descriptor:	(2S)-2-(3-{[1-(4-METHOXYBENZOYL)-2-METHYL-5-(TRIFLUOROMETHOXY)-1H-INDOL-3-YL]METHYL}PHENOXY)PROPANOIC ACID, 2-chloro-5-nitro-N-phenylbenzamide, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2024-05-08
Release date:	2024-08-07
Method:	X-RAY DIFFRACTION (2.48 Å)
Cite:	Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife, 2024

8ZFT

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with T0070907 and SR1664
Descriptor:	2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, 4'-[(2,3-dimethyl-5-{[(1S)-1-(4-nitrophenyl)ethyl]carbamoyl}-1H-indol-1-yl)methyl]biphenyl-2-carboxylic acid, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2024-05-08
Release date:	2024-08-07
Method:	X-RAY DIFFRACTION (3.2 Å)
Cite:	Unanticipated mechanisms of covalent inhibitor and synthetic ligand cobinding to PPAR gamma. Elife, 2024

2RO4

RDC-refined Solution Structure of the N-terminal DNA Recognition Domain of the Bacillus subtilis Transition-state Regulator AbrB
Descriptor:	Transition state regulatory protein abrB
Authors:	Sullivan, D.M, Bobay, B.G, Kojetin, D.J, Thompson, R.J, Rance, M, Strauch, M.A, Cavanagh, J.
Deposit date:	2008-03-08
Release date:	2008-11-11
Last modified:	2024-05-01
Method:	SOLUTION NMR
Cite:	Insights into the nature of DNA binding of AbrB-like transcription factors Structure, 16, 2008

6VZO

Crystal structure of human PPARgamma ligand binding domain (Protein delipidated by denature and refold)
Descriptor:	Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2020-02-28
Release date:	2021-03-03
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.27 Å)
Cite:	Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021

6VZM

Crystal structure of human PPARgamma ligand binding domain Y473E mutant in complex with Darglitazone
Descriptor:	(5Z)-5-({4-[3-(5-methyl-2-phenyl-1,3-oxazol-4-yl)propanoyl]phenyl}methylidene)-1,3-thiazolidine-2,4-dione, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2020-02-28
Release date:	2021-03-03
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021

6VZN

Crystal structure of human PPARgamma ligand binding domain Y473E mutant
Descriptor:	Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2020-02-28
Release date:	2021-03-03
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021

6VZL

Crystal structure of human PPARgamma ligand binding domain in complex with GW1929
Descriptor:	(2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid, Peroxisome proliferator-activated receptor gamma
Authors:	Shang, J, Kojetin, D.J.
Deposit date:	2020-02-28
Release date:	2021-03-03
Last modified:	2023-10-11
Method:	X-RAY DIFFRACTION (2.07 Å)
Cite:	Structural mechanism underlying ligand binding and activation of PPAR gamma. Structure, 29, 2021

6WMQ

Crystal Structure of Human REV-ERBbeta Ligand Binding Domain Co-Bound to Heme and NCoR ID1 Peptide
Descriptor:	Nuclear receptor Rev-ErbA beta variant 1, Nuclear receptor corepressor 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:	Mosure, S.A, Shang, J, Kojetin, D.J.
Deposit date:	2020-04-21
Release date:	2021-02-17
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (2.55 Å)
Cite:	Structural basis for heme-dependent NCoR binding to the transcriptional repressor REV-ERB beta. Sci Adv, 7, 2021

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