Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
9XIM
DownloadVisualize
BU of 9xim by Molmil
PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES
Descriptor: D-XYLOSE ISOMERASE, D-xylose, MANGANESE (II) ION
Authors:Janin, J.
Deposit date:1992-04-03
Release date:1993-07-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Protein engineering of xylose (glucose) isomerase from Actinoplanes missouriensis. 1. Crystallography and site-directed mutagenesis of metal binding sites.
Biochemistry, 31, 1992
9WSW
DownloadVisualize
BU of 9wsw by Molmil
Cryo-EM structure of endomorphin-1-muOR-Gz-scFv16 complex
Descriptor: Engineered guanine nucleotide-binding protein G(z) subunit alpha, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhang, H, Wang, X, Xi, K, Shen, Q, Xue, J, Zhu, Y, Yang, G, Zhang, Y.
Deposit date:2025-09-15
Release date:2025-11-26
Last modified:2025-12-24
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:The molecular basis of mu-opioid receptor signaling plasticity.
Cell Res., 35, 2025
9WSX
DownloadVisualize
BU of 9wsx by Molmil
Cryo-EM structure of endomorphin-1-muOR-arrestin2-Fab30 complex
Descriptor: Beta-arrestin-1, Fab30 heavy chain, Fab30 light chain, ...
Authors:Zhang, H, Wang, X, Xi, K, Shen, Q, Xue, J, Zhu, Y, Yang, G, Zhang, Y.
Deposit date:2025-09-15
Release date:2025-11-26
Last modified:2025-12-24
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:The molecular basis of mu-opioid receptor signaling plasticity.
Cell Res., 35, 2025
4WA2
DownloadVisualize
BU of 4wa2 by Molmil
The crystal structure of hemagglutinin from a H3N8 influenza virus isolated from New England harbor seals in complex with 3'SLN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Yang, H, Villanueva, J.M, Gubareva, L.V, Stevens, J.
Deposit date:2014-08-28
Release date:2015-01-14
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Functional Analysis of Surface Proteins from an A(H3N8) Influenza Virus Isolated from New England Harbor Seals.
J.Virol., 89, 2015
9WSV
DownloadVisualize
BU of 9wsv by Molmil
Cryo-EM structure of DAMGO-muOR-arrestin-1-Fab30 complex
Descriptor: Beta-arrestin-1, DAMGO, Fab30 heavy chain, ...
Authors:Zhang, H, Wang, X, Xi, K, Shen, Q, Xue, J, Zhu, Y, Yang, G, Zhang, Y.
Deposit date:2025-09-15
Release date:2025-11-26
Last modified:2025-12-24
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:The molecular basis of mu-opioid receptor signaling plasticity.
Cell Res., 35, 2025
9WD8
DownloadVisualize
BU of 9wd8 by Molmil
structure of human KCNQ1-KCNE3-CaM complex with two PIP2
Descriptor: (2R)-3-{[(S)-hydroxy{[(1R,2R,3S,4R,5R,6S)-2,3,6-trihydroxy-4,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl di[(9Z)-octadec-9-enoate], CALCIUM ION, Calmodulin-1, ...
Authors:Cui, C, Sun, J.
Deposit date:2025-08-18
Release date:2025-09-03
Last modified:2025-11-19
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Mechanisms of KCNQ1 gating modulation by KCNE1/3 for cell-specific function.
Cell Res., 35, 2025
9WST
DownloadVisualize
BU of 9wst by Molmil
Cryo-EM structure of DAMGO-muOR-Gz-scFv16 complex
Descriptor: DAMGO, Engineered guanine nucleotide-binding protein G(z) subunit alpha, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, ...
Authors:Zhang, H, Wang, X, Xi, K, Shen, Q, Xue, J, Zhu, Y, Yang, G, Zhang, Y.
Deposit date:2025-09-15
Release date:2025-11-26
Last modified:2025-12-24
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:The molecular basis of mu-opioid receptor signaling plasticity.
Cell Res., 35, 2025
4WA1
DownloadVisualize
BU of 4wa1 by Molmil
The crystal structure of hemagglutinin from a H3N8 influenza virus isolated from New England harbor seals
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, ...
Authors:Yang, H, Villanueva, J.M, Gubareva, L.V, Stevens, J.
Deposit date:2014-08-28
Release date:2015-01-14
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Structural and Functional Analysis of Surface Proteins from an A(H3N8) Influenza Virus Isolated from New England Harbor Seals.
J.Virol., 89, 2015
4UX5
DownloadVisualize
BU of 4ux5 by Molmil
Structure of DNA complex of PCG2
Descriptor: 5'-D(*CP*AP*AP*TP*GP*AP*CP*GP*CP*GP*TP*AP*AP*GP)-3', 5'-D(*CP*TP*TP*AP*CP*GP*CP*GP*TP*CP*AP*TP*TP*GP)-3', TRANSCRIPTION FACTOR MBP1
Authors:Liu, J, Huang, J, Zhao, Y, Liu, H, Wang, D, Yang, J, Zhao, W, Taylor, I.A, Peng, Y.
Deposit date:2014-08-19
Release date:2015-01-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis of DNA Recognition by Pcg2 Reveals a Novel DNA Binding Mode for Winged Helix-Turn-Helix Domains.
Nucleic Acids Res., 43, 2015
4V6K
DownloadVisualize
BU of 4v6k by Molmil
Structural insights into cognate vs. near-cognate discrimination during decoding.
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Agirrezabala, X, Schreiner, E, Trabuco, L.G, Lei, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J.
Deposit date:2011-01-07
Release date:2014-07-09
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (8.25 Å)
Cite:Structural insights into cognate versus near-cognate discrimination during decoding.
Embo J., 30, 2011
4V6L
DownloadVisualize
BU of 4v6l by Molmil
Structural insights into cognate vs. near-cognate discrimination during decoding.
Descriptor: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Agirrezabala, X, Schreiner, E, Trabuco, L.G, Lei, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J.
Deposit date:2011-01-07
Release date:2014-07-09
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (13.2 Å)
Cite:Structural insights into cognate versus near-cognate discrimination during decoding.
Embo J., 30, 2011
4V48
DownloadVisualize
BU of 4v48 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the initiation-like state of E. coli 70S ribosome
Descriptor: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (11.5 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4V47
DownloadVisualize
BU of 4v47 by Molmil
Real space refined coordinates of the 30S and 50S subunits fitted into the low resolution cryo-EM map of the EF-G.GTP state of E. coli 70S ribosome
Descriptor: 16S RIBOSOMAL RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Gao, H, Sengupta, J, Valle, M, Korostelev, A, Eswar, N, Stagg, S.M, Van Roey, P, Agrawal, R.K, Harvey, S.T, Sali, A, Chapman, M.S, Frank, J.
Deposit date:2003-05-06
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (12.3 Å)
Cite:Study of the structural dynamics of the E. coli 70S ribosome using real space refinement
Cell(Cambridge,Mass.), 113, 2003
4US2
DownloadVisualize
BU of 4us2 by Molmil
The crystal structure of H-Ras and SOS in complex with ligands
Descriptor: 3-[(3R)-1-ethyl-2,5-dioxopyrrolidin-3-yl]benzamide, GTPASE HRAS, SON OF SEVENLESS HOMOLOG 1
Authors:Winter, J.J.G, Anderson, M, Blades, K, Brassington, C, Breeze, A.L, Chresta, C, Embrey, K, Fairley, G, Faulder, P, Finlay, M.R.V, Kettle, J.G, Nowak, T, Overman, R, Patel, S.J, Perkins, P, Spadola, L, Tart, J, Tucker, J, Wrigley, G.
Deposit date:2014-07-02
Release date:2015-03-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Small Molecule Binding Sites on the Ras:SOS Complex Can be Exploited for Inhibition of Ras Activation.
J.Med.Chem., 58, 2015
9W6W
DownloadVisualize
BU of 9w6w by Molmil
5-CT-bound serotonin 5A (5-HT5A) receptor-Gi protein complex
Descriptor: 3-(2-azanylethyl)-1H-indole-5-carboxamide, Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2, Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1, ...
Authors:Zhang, X, Xie, L, Chen, P, Yu, J, Tian, X, Wei, J, Shao, Z, Yan, W, Xu, Z.
Deposit date:2025-08-05
Release date:2025-11-26
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural and Functional Basis for Biased Agonism at the 5-hydroxytryptamine 5A Receptor.
Mol Biomed, 6, 2025
4URV
DownloadVisualize
BU of 4urv by Molmil
The crystal structure of H-Ras and SOS in complex with ligands
Descriptor: 4-(4-BROMOPHENYL)PIPERIDIN-4-OL, FORMIC ACID, GTPASE HRAS, ...
Authors:Winter, J.J.G, Anderson, M, Blades, K, Brassington, C, Breeze, A.L, Chresta, C, Embrey, K, Fairley, G, Faulder, P, Finlay, M.R.V, Kettle, J.G, Nowak, T, Overman, R, Patel, S.J, Perkins, P, Spadola, L, Tart, J, Tucker, J, Wrigley, G.
Deposit date:2014-07-02
Release date:2015-03-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Small Molecule Binding Sites on the Ras:SOS Complex Can be Exploited for Inhibition of Ras Activation.
J.Med.Chem., 58, 2015
4US1
DownloadVisualize
BU of 4us1 by Molmil
The crystal structure of H-Ras and SOS in complex with ligands
Descriptor: (3S)-3-[3-(aminomethyl)phenyl]-1-ethylpyrrolidine-2,5-dione, GTPASE HRAS, SON OF SEVENLESS HOMOLOG 1
Authors:Winter, J.J.G, Anderson, M, Blades, K, Brassington, C, Breeze, A.L, Chresta, C, Embrey, K, Fairley, G, Faulder, P, Finlay, M.R.V, Kettle, J.G, Nowak, T, Overman, R, Patel, S.J, Perkins, P, Spadola, L, Tart, J, Tucker, J, Wrigley, G.
Deposit date:2014-07-02
Release date:2015-03-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Small Molecule Binding Sites on the Ras:SOS Complex Can be Exploited for Inhibition of Ras Activation.
J.Med.Chem., 58, 2015
4V4W
DownloadVisualize
BU of 4v4w by Molmil
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal subunit protein S10, ...
Authors:Mitra, K, Frank, J.
Deposit date:2006-05-09
Release date:2014-07-09
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (15 Å)
Cite:Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements
Mol.Cell, 22, 2006
4V6P
DownloadVisualize
BU of 4v6p by Molmil
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Agirrezabala, X, Liao, H, Schreiner, E, Fu, J, Ortiz-Meoz, R.F, Schulten, K, Green, R, Frank, J.
Deposit date:2011-12-08
Release date:2014-07-09
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (13.5 Å)
Cite:Structural characterization of mRNA-tRNA translocation intermediates.
Proc.Natl.Acad.Sci.USA, 109, 2012
9YQ2
DownloadVisualize
BU of 9yq2 by Molmil
Chlorella virus hyaluronan synthase bound to DDM
Descriptor: CHOLESTEROL HEMISUCCINATE, DODECYL-BETA-D-MALTOSIDE, Hyaluronan synthase, ...
Authors:Stephens, Z, Zimmer, J.
Deposit date:2025-10-15
Release date:2025-12-10
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Insights into substrate binding and utilization by hyaluronan synthase.
Biorxiv, 2025
9YQ4
DownloadVisualize
BU of 9yq4 by Molmil
Chlorella virus hyaluronan synthase bound to a proofreading UDP-GlcA
Descriptor: CHOLESTEROL HEMISUCCINATE, Hyaluronan synthase, MANGANESE (II) ION, ...
Authors:Stephens, Z, Zimmer, J.
Deposit date:2025-10-15
Release date:2025-12-10
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Insights into substrate binding and utilization by hyaluronan synthase.
Biorxiv, 2025
4V8M
DownloadVisualize
BU of 4v8m by Molmil
High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome
Descriptor: 18S RRNA OF THE SMALL RIBOSOMAL SUBUNIT, 40S RIBOSOMAL PROTEIN S10, PUTATIVE, ...
Authors:Hashem, Y, des Georges, A, Fu, J, Buss, S.N, Jossinet, F, Jobe, A, Zhang, Q, Liao, H.Y, Grassucci, R.A, Bajaj, C, Westhof, E, Madison-Antenucci, S, Frank, J.
Deposit date:2012-12-09
Release date:2014-07-09
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (5.57 Å)
Cite:High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome.
Nature, 494, 2013
4UQQ
DownloadVisualize
BU of 4uqq by Molmil
Electron density map of GluK2 desensitized state in complex with 2S,4R-4-methylglutamate
Descriptor: GLUTAMATE RECEPTOR IONOTROPIC, KAINATE 2, GLUTAMIC ACID
Authors:Meyerson, J.R, Kumar, J, Chittori, S, Rao, P, Pierson, J, Bartesaghi, A, Mayer, M.L, Subramaniam, S.
Deposit date:2014-06-24
Release date:2014-08-13
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (7.6 Å)
Cite:Structural Mechanism of Glutamate Receptor Activation and Desensitization
Nature, 514, 2014
9YQ5
DownloadVisualize
BU of 9yq5 by Molmil
Chlorella virus hyaluronan synthase bound to an inserted UDP-GlcA
Descriptor: CHOLESTEROL HEMISUCCINATE, Hyaluronan synthase, MANGANESE (II) ION, ...
Authors:Stephens, Z, Zimmer, J.
Deposit date:2025-10-15
Release date:2025-12-10
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Insights into substrate binding and utilization by hyaluronan synthase.
Biorxiv, 2025
4UQJ
DownloadVisualize
BU of 4uqj by Molmil
Cryo-EM density map of GluA2em in complex with ZK200775
Descriptor: GLUTAMATE RECEPTOR 2, {[7-morpholin-4-yl-2,3-dioxo-6-(trifluoromethyl)-3,4-dihydroquinoxalin-1(2H)-yl]methyl}phosphonic acid
Authors:Meyerson, J.R, Kumar, J, Chittori, S, Rao, P, Pierson, J, Bartesaghi, A, Mayer, M.L, Subramaniam, S.
Deposit date:2014-06-24
Release date:2014-08-13
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (10.4 Å)
Cite:Structural Mechanism of Glutamate Receptor Activation and Desensitization
Nature, 514, 2014

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon