Author results

1CDW
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HUMAN TBP CORE DOMAIN COMPLEXED WITH DNA
Descriptor:DNA (5'-D(*CP*TP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*AP*G)-3'), PROTEIN (TATA BINDING PROTEIN (TBP))
Authors:Nikolov, D.B., Chen, H., Halay, E.D., Hoffmann, A., Roeder, R.G., Burley, S.K.
Deposit date:1996-04-11
Release date:1996-12-23
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of a human TATA box-binding protein/TATA element complex.
Proc.Natl.Acad.Sci.USA, 93, 1996
1VOK
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ARABIDOPSIS THALIANA TBP (DIMER)
Descriptor:TATA-BOX-BINDING PROTEIN, SULFATE ION
Authors:Nikolov, D.B., Burley, S.K.
Deposit date:1996-04-29
Release date:1996-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:2.1 A resolution refined structure of a TATA box-binding protein (TBP).
Nat.Struct.Biol., 1, 1994
1VOL
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TFIIB (HUMAN CORE DOMAIN)/TBP (A.THALIANA)/TATA ELEMENT TERNARY COMPLEX
Descriptor:DNA (5'-D(*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*C)-3'), PROTEIN (TRANSCRIPTION FACTOR IIB (TFIIB)), ...
Authors:Nikolov, D.B., Chen, H., Halay, E.D., Usheva, A.U., Hisatake, K., Lee, D.K., Roeder, R.G., Burley, S.K.
Deposit date:1996-04-29
Release date:1996-11-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of a TFIIB-TBP-TATA-element ternary complex.
Nature, 377, 1995
1SHX
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EPHRIN A5 LIGAND STRUCTURE
Descriptor:Ephrin-A5, N-ACETYL-D-GLUCOSAMINE
Authors:Himanen, J.P., Barton, W.A., Nikolov, D.B., Jeffrey, P.D.
Deposit date:2004-02-26
Release date:2005-04-19
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Three distinct molecular surfaces in ephrin-A5 are essential for a functional interaction with EphA3.
J.Biol.Chem., 280, 2005
1FVI
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CRYSTAL STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE
Descriptor:CHLORELLA VIRUS DNA LIGASE-ADENYLATE, SULFATE ION, ADENOSINE MONOPHOSPHATE
Authors:Odell, M., Sriskanda, V., Shuman, S., Nikolov, D.B.
Deposit date:2000-09-20
Release date:2000-11-22
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining.
Mol.Cell, 6, 2000
1IIM
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THYMIDYLYLTRANSFERASE COMPLEXED WITH TTP
Descriptor:glucose-1-phosphate thymidylyltransferase, THYMIDINE-5'-TRIPHOSPHATE
Authors:Barton, W.A., Lesniak, J., Biggins, J.B., Jeffrey, P.D., Jiang, J., Rajashankar, K.R., Thorson, J.S., Nikolov, D.B.
Deposit date:2001-04-23
Release date:2001-05-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure, mechanism and engineering of a nucleotidylyltransferase as a first step toward glycorandomization.
Nat.Struct.Biol., 8, 2001
1IIN
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THYMIDYLYLTRANSFERASE COMPLEXED WITH UDP-GLUCOSE
Descriptor:glucose-1-phosphate thymidylyltransferase, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Barton, W.A., Lesniak, J., Biggins, J.B., Jeffrey, P.D., Jiang, J., Rajashankar, K.R., Thorson, J.S., Nikolov, D.B.
Deposit date:2001-04-23
Release date:2001-05-09
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structure, mechanism and engineering of a nucleotidylyltransferase as a first step toward glycorandomization.
Nat.Struct.Biol., 8, 2001
1KGY
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CRYSTAL STRUCTURE OF THE EPHB2-EPHRINB2 COMPLEX
Descriptor:EPHRIN TYPE-B RECEPTOR 2, EPHRIN-B2
Authors:Himanen, J.P., Rajashankar, K.R., Lackmann, M., Cowan, C.A., Henkemeyer, M., Nikolov, D.B.
Deposit date:2001-11-28
Release date:2002-05-28
Last modified:2017-02-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of an Eph receptor-ephrin complex.
Nature, 414, 2001
1MP3
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L89T VARIANT OF S. ENTERICA RMLA
Descriptor:GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE, THYMIDINE-5'-TRIPHOSPHATE
Authors:Barton, W.A., Biggins, J.B., Jiang, J., Thorson, J.T., Nikolov, D.B.
Deposit date:2002-09-11
Release date:2002-10-09
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Expanding pyrimidine diphosphosugar libraries via structure-based nucleotidylyltransferase engineering
Proc.Natl.Acad.Sci.USA, 99, 2002
1MP4
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W224H VARIANT OF S. ENTERICA RMLA
Descriptor:W224H Variant of S. Enterica RmlA Bound to UDP-Glucose, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Barton, W.A., Biggins, J.B., Jiang, J., Thorson, J.S., Nikolov, D.B.
Deposit date:2002-09-11
Release date:2002-10-09
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Expanding pyrimidine diphosphosugar libraries via structure-based nucleotidylyltransferase engineering
Proc.Natl.Acad.Sci.USA, 99, 2002
1MP5
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Y177F VARIANT OF S. ENTERICA RMLA
Descriptor:Y177F VARIANT OF S. ENTERICA RmlA BOUND TO UDP-GLUCOSE, URIDINE-5'-DIPHOSPHATE-GLUCOSE
Authors:Barton, W.A., Biggins, J.B., Jiang, J., Thorson, J.S., Nikolov, D.B.
Deposit date:2002-09-11
Release date:2002-10-09
Last modified:2018-01-31
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Expanding pyrimidine diphosphosugar libraries via structure-based nucleotidylyltransferase engineering
Proc.Natl.Acad.Sci.USA, 99, 2002
1N2F
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CRYSTAL STRUCTURE OF P. AERUGINOSA OHR
Descriptor:Organic Hydroperoxide Resistance Protein, 2,3-DIHYDROXY-1,4-DITHIOBUTANE
Authors:Lesniak, J., Barton, W.A., Nikolov, D.B.
Deposit date:2002-10-22
Release date:2002-12-25
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Structural and functional characterization of the Pseudomonas hydroperoxide resistance protein Ohr
Embo J., 21, 2002
1NUK
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CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAIN OF THE EPHB2 RECEPTOR TYROSINE KINASE
Descriptor:PROTEIN (TYROSINE-PROTEIN KINASE RECEPTOR EPH)
Authors:Himanen, J.-P., Henkemeyer, M., Nikolov, D.B.
Deposit date:1998-10-13
Release date:1999-10-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of the ligand-binding domain of the receptor tyrosine kinase EphB2.
Nature, 396, 1998
1P8T
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CRYSTAL STRUCTURE OF NOGO-66 RECEPTOR
Descriptor:Reticulon 4 receptor, N-ACETYL-D-GLUCOSAMINE, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Authors:Barton, W.A., Liu, B.P., Tzvetkova, D., Jeffrey, P.D., Fournier, A.E., Sah, D., Cate, R., Strittmatter, S.M., Nikolov, D.B.
Deposit date:2003-05-07
Release date:2003-05-20
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structure and axon outgrowth inhibitor binding of the Nogo-66 receptor and related proteins
Embo J., 22, 2003
1QWI
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CRYSTAL STRUCTURE OF E. COLI OSMC
Descriptor:osmotically inducible protein
Authors:Lesniak, J., Barton, W.A., Nikolov, D.B.
Deposit date:2003-09-02
Release date:2003-12-16
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and functional features of the Escherichia coli hydroperoxide resistance protein OsmC
Protein Sci., 12, 2003
1VTL
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CO-CRYSTAL STRUCTURE OF TBP RECOGNIZING THE MINOR GROOVE OF A TATA ELEMENT
Descriptor:DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3'), TATA BINDING PROTEIN (TBP)
Authors:Kim, J.L., Nikolov, D.B., Burley, S.K.
Deposit date:1993-12-17
Release date:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Co-Crystal Structure of TBP Recognizing the Minor Groove of a TATA Element
Nature, 365, 1993
1Z3S
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ANGIOPOIETIN-2 RECEPTOR BINDING DOMAIN
Descriptor:Angiopoietin-2, CALCIUM ION
Authors:Barton, W.A., Tzvetkova, D., Nikolov, D.B.
Deposit date:2005-03-14
Release date:2005-07-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure of the angiopoietin-2 receptor binding domain and identification of surfaces involved in Tie2 recognition.
Structure, 13, 2005
1Z3U
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STRUCTURE OF THE ANGIOPOIETIN-2 RECPTOR BINDING DOMAIN AND IDENTIFICATION OF SURFACES INVOLVED IN TIE2 RECOGNITION
Descriptor:Angiopoietin-2, CALCIUM ION
Authors:Barton, W.A., Tzvetkova, D., Nikolov, D.B.
Deposit date:2005-03-14
Release date:2005-07-12
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structure of the angiopoietin-2 receptor binding domain and identification of surfaces involved in Tie2 recognition.
Structure, 13, 2005
2AO7
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ADAM10 DISINTEGRIN AND CYSTEINE- RICH DOMAIN
Descriptor:ADAM 10, SULFATE ION
Authors:Janes, P.W., Saha, N., Barton, W.A., Kolev, M.V., Wimmer-Kleikamp, S.H., Nievergall, E., Blobel, C.P., Himanen, J.-P., Lackmann, M., Nikolov, D.B.
Deposit date:2005-08-12
Release date:2006-08-08
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Adam meets Eph: an ADAM substrate recognition module acts as a molecular switch for ephrin cleavage in trans.
Cell(Cambridge,Mass.), 123, 2005
2GY5
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TIE2 LIGAND-BINDING DOMAIN CRYSTAL STRUCTURE
Descriptor:Angiopoietin-1 receptor, N-ACETYL-D-GLUCOSAMINE, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, ...
Authors:Barton, W.A., Nikolov, D.B.
Deposit date:2006-05-09
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structures of the Tie2 receptor ectodomain and the angiopoietin-2-Tie2 complex.
Nat.Struct.Mol.Biol., 13, 2006
2GY7
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ANGIOPOIETIN-2/TIE2 COMPLEX CRYSTAL STRUCTURE
Descriptor:Angiopoietin-2, Angiopoietin-1 receptor, CALCIUM ION, ...
Authors:Barton, W.A., Nikolov, D.B.
Deposit date:2006-05-09
Release date:2006-06-06
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structures of the Tie2 receptor ectodomain and the angiopoietin-2-Tie2 complex.
Nat.Struct.Mol.Biol., 13, 2006
3D11
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CRYSTAL STRUCTURES OF THE NIPAH G ATTACHMENT GLYCOPROTEIN
Descriptor:Hemagglutinin-neuraminidase, N-ACETYL-D-GLUCOSAMINE, 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE, ...
Authors:Xu, K., Rajashankar, K.R., Chan, Y.P., Himanen, P., Broder, C.C., Nikolov, D.B.
Deposit date:2008-05-02
Release date:2008-08-19
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.306 Å)
Cite:Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3.
Proc.Natl.Acad.Sci.USA, 105, 2008
3D12
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CRYSTAL STRUCTURES OF NIPAH VIRUS G ATTACHMENT GLYCOPROTEIN IN COMPLEX WITH ITS RECEPTOR EPHRIN-B3
Descriptor:Hemagglutinin-neuraminidase, Ephrin-B3, N-ACETYL-D-GLUCOSAMINE, ...
Authors:Xu, K., Rajashankar, K.R., Chan, Y.P., Himanen, P., Broder, C.C., Nikolov, D.B.
Deposit date:2008-05-02
Release date:2008-08-19
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (3.005 Å)
Cite:Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3.
Proc.Natl.Acad.Sci.USA, 105, 2008
3HEI
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LIGAND RECOGNITION BY A-CLASS EPH RECEPTORS: CRYSTAL STRUCTURES OF THE EPHA2 LIGAND-BINDING DOMAIN AND THE EPHA2/EPHRIN-A1 COMPLEX
Descriptor:Ephrin type-A receptor 2, Ephrin-A1
Authors:Himanen, J.P., Goldgur, Y., Miao, H., Myshkin, E., Guo, H., Buck, M., Nguyen, M., Rajashankar, K.R., Wang, B., Nikolov, D.B.
Deposit date:2009-05-08
Release date:2009-06-30
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex.
Embo Rep., 10, 2009
3HPN
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LIGAND RECOGNITION BY A-CLASS EPH RECEPTORS: CRYSTAL STRUCTURES OF THE EPHA2 LIGAND-BINDING DOMAIN AND THE EPHA2/EPHRIN-A1 COMPLEX
Descriptor:Ephrin type-A receptor 2
Authors:Himanen, J.P., Goldgur, Y., Miao, H., Myshkin, E., Guo, H., Buck, M., Nguyen, M., Rajashankar, K.R., Wang, B., Nikolov, D.B.
Deposit date:2009-06-04
Release date:2009-06-30
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Ligand recognition by A-class Eph receptors: crystal structures of the EphA2 ligand-binding domain and the EphA2/ephrin-A1 complex.
Embo Rep., 10, 2009
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