Crystal Structures of Nipah Virus G Attachment Glycoprotein in Complex with its Receptor Ephrin-B3

Summary for 3D12

DescriptorHemagglutinin-neuraminidase, Ephrin-B3, N-ACETYL-D-GLUCOSAMINE, ... (15 entities in total)
Functional Keywordsbeta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-anchor, transmembrane, virion, developmental protein, differentiation, neurogenesis, hydrolase-membrane protein complex, hydrolase/membrane protein
Biological sourceNipah virus
Cellular locationVirion membrane ; Single-pass type II membrane protein  Q9IH62
Membrane; Single-pass type I membrane protein O35393
Total number of polymer chains4
Total molecular weight136156.15
Xu, K.,Rajashankar, K.R.,Chan, Y.P.,Himanen, P.,Broder, C.C.,Nikolov, D.B. (deposition date: 2008-05-02, release date: 2008-08-19, Last modification date: 2017-10-25)
Primary citation
Xu, K.,Rajashankar, K.R.,Chan, Y.P.,Himanen, J.P.,Broder, C.C.,Nikolov, D.B.
Host cell recognition by the henipaviruses: crystal structures of the Nipah G attachment glycoprotein and its complex with ephrin-B3.
Proc.Natl.Acad.Sci.USA, 105:9953-9958, 2008
PubMed: 18632560 (PDB entries with the same primary citation)
DOI: 10.1073/pnas.0804797105
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.250221.6%10.6%0.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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Molmil generated image of 3d12
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