3D12
Crystal Structures of Nipah Virus G Attachment Glycoprotein in Complex with its Receptor Ephrin-B3
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, D) | Hemagglutinin-neuraminidase | polymer | 428 | 47966.5 | 2 | UniProt (Q9IH62) Pfam (PF00423) | Nipah virus | |
| 2 | B, D (B, E) | Ephrin-B3 | polymer | 141 | 16065.2 | 2 | UniProt (O35393) Pfam (PF00812) | Mus musculus (mouse) | |
| 3 | E (C) | beta-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G42769XG) | |||
| 4 | F (F) | beta-D-glucopyranose-(1-3)-[alpha-D-glucopyranose-(1-6)]beta-D-gulopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[beta-D-glucopyranose-(1-3)][alpha-D-glucopyranose-(1-6)]2-acetamido-2-deoxy-alpha-D-idopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G63190SA) | |||
| 5 | G, J (G, J) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 6 | H (H) | beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G47515FY) | |||
| 7 | I (I) | beta-D-glucopyranose-(1-3)-[alpha-D-glucopyranose-(1-6)]beta-D-gulopyranose-(1-4)-2-acetamido-2-deoxy-alpha-L-glucopyranose-(1-4)-[beta-D-glucopyranose-(1-3)][alpha-L-galactopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-gulopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G52818VR) | |||
| 8 | K, W (A, D) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 9 | AA, BA, CA, DA, EA... (D, E, A, B) | SULFATE ION | non-polymer | 96.1 | 22 | Chemie (SO4) | |||
| 10 | IA, JA, KA, LA (A, B, D, E) | water | water | 18.0 | 112 | Chemie (HOH) |
Sequence modifications
A, D: 176 - 602 (UniProt: Q9IH62)
| PDB | External Database | Details |
|---|---|---|
| Ala 603 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 128063.4 | |
| Branched | Number of molecules | 6 |
| Total formula weight | 5140.7 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 2555.8 | |
| All* | Total formula weight | 135759.8 |
