Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2ALP
DownloadVisualize
BU of 2alp by Molmil
REFINED STRUCTURE OF ALPHA-LYTIC PROTEASE AT 1.7 ANGSTROMS RESOLUTION. ANALYSIS OF HYDROGEN BONDING AND SOLVENT STRUCTURE
Descriptor: ALPHA-LYTIC PROTEASE, SULFATE ION
Authors:Fujinaga, M, Delbaere, L.T.J, Brayer, G.D, James, M.N.G.
Deposit date:1985-03-07
Release date:1985-07-17
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Refined structure of alpha-lytic protease at 1.7 A resolution. Analysis of hydrogen bonding and solvent structure.
J.Mol.Biol., 184, 1985
6CGV
DownloadVisualize
BU of 6cgv by Molmil
Revised crystal structure of human adenovirus
Descriptor: Hexon protein, Hexon-interlacing protein, Penton protein, ...
Authors:Natchiar, S.K, Venkataraman, S, Nemerow, G.R, Reddy, V.S.
Deposit date:2018-02-21
Release date:2018-04-25
Last modified:2019-12-18
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Revised Crystal Structure of Human Adenovirus Reveals the Limits on Protein IX Quasi-Equivalence and on Analyzing Large Macromolecular Complexes.
J. Mol. Biol., 430, 2018
2BE5
DownloadVisualize
BU of 2be5 by Molmil
Crystal structure of the T. Thermophilus RNA polymerase holoenzyme in complex with inhibitor tagetitoxin
Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Vassylyev, D.G, Svetlov, V, Vassylyeva, M.N, Perederina, A, Igarashi, N, Matsugaki, N, Wakatsuki, S, Artsimovitch, I, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-10-22
Release date:2005-11-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for transcription inhibition by tagetitoxin
Nat.Struct.Mol.Biol., 12, 2005
2PRQ
DownloadVisualize
BU of 2prq by Molmil
X-ray crystallographic characterization of the Co(II)-substituted Tris-bound form of the aminopeptidase from Aeromonas proteolytica
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Bacterial leucyl aminopeptidase, COBALT (II) ION
Authors:Munih, P, Moulin, A, Stamper, C.C, Bennet, B, Ringe, D, Petsko, G.A, Holz, R.C.
Deposit date:2007-05-04
Release date:2007-06-12
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:X-ray crystallographic characterization of the Co(II)-substituted Tris-bound form of the aminopeptidase from Aeromonas proteolytica.
J.Inorg.Biochem., 101, 2007
5CX7
DownloadVisualize
BU of 5cx7 by Molmil
Crystal Structure of PduOC:Heme Complex
Descriptor: ATP:cob(I)alamin adenosyltransferase, CHLORIDE ION, GLYCEROL, ...
Authors:Geremia, S, Hickey, N, Ortiz de Orue Lucana, D.
Deposit date:2015-07-28
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The Crystal Structure of the C-Terminal Domain of the Salmonella enterica PduO Protein: An Old Fold with a New Heme-Binding Mode.
Front Microbiol, 7, 2016
5CV2
DownloadVisualize
BU of 5cv2 by Molmil
Structural implications of homo-pyrimidine base pairs on the parallel-stranded d(GAY) motif
Descriptor: DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*CP*GP*AP*CP*GP*AP*T)-3'), STRONTIUM ION
Authors:Tripathi, S, Paukstelis, P.
Deposit date:2015-07-25
Release date:2015-12-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.693 Å)
Cite:Structural Implications of Homopyrimidine Base Pairs in the Parallel-Stranded d(YGA) Motif.
Chembiochem, 17, 2016
2CW0
DownloadVisualize
BU of 2cw0 by Molmil
Crystal structure of Thermus thermophilus RNA polymerase holoenzyme at 3.3 angstroms resolution
Descriptor: DNA-directed RNA polymerase alpha chain, DNA-directed RNA polymerase beta chain, DNA-directed RNA polymerase beta' chain, ...
Authors:Tuske, S, Sarafianos, S.G, Wang, X, Hudson, B, Sineva, E, Mukhopadhyay, J, Birktoft, J.J, Leroy, O, Ismail, S, Clark Jr, A.D, Dharia, C, Napoli, A, Laptenko, O, Lee, J, Borukhov, S, Ebright, R.H, Arnold, E.
Deposit date:2005-06-15
Release date:2005-09-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Inhibition of bacterial RNA polymerase by streptolydigin: stabilization of a straight-bridge-helix active-center conformation
Cell(Cambridge,Mass.), 122, 2005
2Q6N
DownloadVisualize
BU of 2q6n by Molmil
Structure of Cytochrome P450 2B4 with Bound 1-(4-cholorophenyl)imidazole
Descriptor: 1-(4-CHLOROPHENYL)-1H-IMIDAZOLE, Cytochrome P450 2B4, PROTOPORPHYRIN IX CONTAINING FE
Authors:Zhao, Y, Sun, L, Muralidhara, B.K, Kumar, S, White, M.A, Stout, C.D, Halpert, J.R.
Deposit date:2007-06-05
Release date:2007-11-06
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural and thermodynamic consequences of 1-(4-chlorophenyl)imidazole binding to cytochrome P450 2B4.
Biochemistry, 46, 2007
5CZ5
DownloadVisualize
BU of 5cz5 by Molmil
Yeast 20S proteasome beta1-T1A mutant in complex with Carfilzomib
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-07-31
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A unified mechanism for proteolysis and autocatalytic activation in the 20S proteasome.
Nat Commun, 7, 2016
5D0W
DownloadVisualize
BU of 5d0w by Molmil
Yeast 20S proteasome beta5-T1S mutant
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2015-08-03
Release date:2016-03-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A unified mechanism for proteolysis and autocatalytic activation in the 20S proteasome.
Nat Commun, 7, 2016
5D4D
DownloadVisualize
BU of 5d4d by Molmil
Crystal structure of Thermus thermophilus product complex for transcription initiation with NAD and CTP
Descriptor: ADENOSINE MONOPHOSPHATE, CYTIDINE-5'-MONOPHOSPHATE, CYTIDINE-5'-TRIPHOSPHATE, ...
Authors:Zhang, Y, Ebright, R.H.
Deposit date:2015-08-07
Release date:2016-07-06
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3 Å)
Cite:The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA.
Nature, 535, 2016
5DJM
DownloadVisualize
BU of 5djm by Molmil
Structure of WT Human Glutathione Transferase in complex with cisplatin in the absence of glutathione.
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Glutathione S-transferase P, PLATINUM (II) ION
Authors:Parker, L.J.
Deposit date:2015-09-02
Release date:2016-11-02
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A structure-based mechanism of cisplatin resistance mediated by Glutathione Transferase P1-1
Proc.Natl.Acad.Sci.USA, 2019
2D1K
DownloadVisualize
BU of 2d1k by Molmil
Ternary complex of the WH2 domain of mim with actin-dnase I
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, alpha skeletal muscle, ...
Authors:Chereau, D, Kerff, F, Dominguez, R.
Deposit date:2005-08-26
Release date:2006-09-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis for the actin-binding function of missing-in-metastasis
Structure, 15, 2007
5DNN
DownloadVisualize
BU of 5dnn by Molmil
Nucleosome core particle containing adducts of gold(I)-triethylphosphane and ruthenium(II)-toluene PTA complexes
Descriptor: DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Adhireksan, Z, Ma, Z, Davey, C.A.
Deposit date:2015-09-10
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Allosteric cross-talk in chromatin can mediate drug-drug synergy
Nat Commun, 8, 2017
5DNM
DownloadVisualize
BU of 5dnm by Molmil
Nucleosome core particle containing adducts of ruthenium(II)-toluene PTA complex
Descriptor: DNA (145-MER), Histone H2A, Histone H2B 1.1, ...
Authors:Adhireksan, Z, Muhammad, R, Davey, C.A.
Deposit date:2015-09-10
Release date:2016-09-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Allosteric cross-talk in chromatin can mediate drug-drug synergy
Nat Commun, 8, 2017
2CO0
DownloadVisualize
BU of 2co0 by Molmil
WDR5 and unmodified Histone H3 complex at 2.25 Angstrom
Descriptor: HISTONE H3 DIMETHYL-LYSINE 4, WD-REPEAT PROTEIN 5
Authors:Ruthenburg, A.J, Wang, W, Graybosch, D.M, Li, H, Allis, C.D, Patel, D.J, Verdine, G.L.
Deposit date:2006-05-25
Release date:2006-07-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Histone H3 Recognition and Presentation by the Wdr5 Module of the Mll1 Complex
Nat.Struct.Mol.Biol., 13, 2006
2OFR
DownloadVisualize
BU of 2ofr by Molmil
1.00 A Crystal Structure Of V36A/D129A/L130A Mutant of Nitrophorin 4 From Rhodnius Prolixus Complexed With Nitric Oxide at pH 5.6
Descriptor: NITRIC OXIDE, Nitrophorin-4, PHOSPHATE ION, ...
Authors:Amoia, A.M.
Deposit date:2007-01-04
Release date:2008-01-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1 Å)
Cite:Ligand Protection and Nitric Oxide Interactions with Heme in Nitrophorin 4: Kinetic and Structural Analyses of a Loop Mutant
To be Published
2C9M
DownloadVisualize
BU of 2c9m by Molmil
Structure of (SR) Calcium-ATPase in the Ca2E1 state solved in a P1 crystal form.
Descriptor: CALCIUM ION, CHLORIDE ION, POTASSIUM ION, ...
Authors:Lund Jensen, A.-M, Sorensen, T.L.-M, Olesen, C, Moller, J.V, Nissen, P.
Deposit date:2005-12-13
Release date:2006-12-18
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Modulatory and Catalytic Modes of ATP Binding by the Calcium Pump
Embo J., 25, 2006
5E78
DownloadVisualize
BU of 5e78 by Molmil
Crystal structure of P450 BM3 heme domain variant complexed with Co(III)Sep
Descriptor: 1,3,6,8,10,13,16,19-octaazabicyclo[6.6.6]icosane, Bifunctional P-450/NADPH-P450 reductase, CHLORIDE ION, ...
Authors:Panneerselvm, S, Shehzad, A, Bocola, M, Mueller-Dieckmann, J, Schwaneberg, U.
Deposit date:2015-10-12
Release date:2016-09-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystallographic insights into a cobalt (III) sepulchrate based alternative cofactor system of P450 BM3 monooxygenase.
Biochim. Biophys. Acta, 1866, 2018
6CUX
DownloadVisualize
BU of 6cux by Molmil
Escherichia coli RpoB S531L mutant RNA polymerase holoenzyme in complex with Kanglemycin A
Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ...
Authors:Molodtsov, V, Murakami, K.S.
Deposit date:2018-03-26
Release date:2018-07-25
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (4.104 Å)
Cite:Mode of Action of Kanglemycin A, an Ansamycin Natural Product that Is Active against Rifampicin-Resistant Mycobacterium tuberculosis.
Mol. Cell, 72, 2018
2ESV
DownloadVisualize
BU of 2esv by Molmil
Structure of the HLA-E-VMAPRTLIL/KK50.4 TCR complex
Descriptor: Beta-2-microglobulin, HLA class I histocompatibility antigen, alpha chain E, ...
Authors:Hoare, H.L, Rossjohn, J.
Deposit date:2005-10-27
Release date:2006-03-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis for a major histocompatibility complex class Ib-restricted T cell response
Nat.Immunol., 7, 2006
2FK3
DownloadVisualize
BU of 2fk3 by Molmil
Structure of the Alzheimer's Amyloid Precursor Protein (APP) Copper Binding Domain in 'large unit cell' form
Descriptor: Amyloid beta A4 protein precursor, COPPER (II) ION
Authors:Kong, G.K.-W, Parker, M.W.
Deposit date:2006-01-04
Release date:2007-01-16
Last modified:2022-02-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Studies of the Alzheimer's Amyloid Precursor Protein Copper-binding Domain Reveal How it Binds Copper Ions
J.Mol.Biol., 367, 2007
2FKD
DownloadVisualize
BU of 2fkd by Molmil
Crystal Structure of the C-terminal domain of Bacteriophage 186 repressor
Descriptor: Repressor protein CI
Authors:Lewis, M.
Deposit date:2006-01-04
Release date:2006-06-13
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:The structural basis of cooperative regulation at an alternate genetic switch.
Mol.Cell, 21, 2006
2EWW
DownloadVisualize
BU of 2eww by Molmil
Crystal Structure of the Pilus Retraction Motor PilT and Bound ATP
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, twitching motility protein PilT
Authors:Satyshur, K.A, Forest, K.T.
Deposit date:2005-11-07
Release date:2006-11-21
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structures of the pilus retraction motor PilT suggest large domain movements and subunit cooperation drive motility.
Structure, 15, 2007
6CKR
DownloadVisualize
BU of 6ckr by Molmil
Crystal Structure of BRD4 with QC4956
Descriptor: Bromodomain-containing protein 4, N-{3-[2-methyl-6-(1-methyl-1H-pyrazol-4-yl)-1-oxo-1,2-dihydroisoquinolin-4-yl]phenyl}methanesulfonamide
Authors:Hosfield, D.J.
Deposit date:2018-02-28
Release date:2018-05-02
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Design, synthesis and biological evaluation of novel 4-phenylisoquinolinone BET bromodomain inhibitors.
Bioorg. Med. Chem. Lett., 28, 2018

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon