PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

---

2Q4G	Ensemble refinement of the protein crystal structure of human ribonuclease inhibitor complexed with ribonuclease I Descriptor: CITRIC ACID, Ribonuclease inhibitor, Ribonuclease pancreatic Authors: Levin, E.J, Kondrashov, D.A, Wesenberg, G.E, Phillips Jr, G.N, Center for Eukaryotic Structural Genomics (CESG) Deposit date: 2007-05-31 Release date: 2007-06-19 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.954 Å) Cite: Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein. J.Mol.Biol., 368, 2007
3L28	Crystal structure of Zaire Ebola VP35 interferon inhibitory domain K339A mutant Descriptor: CHLORIDE ION, Polymerase cofactor VP35, SODIUM ION, ... Authors: Leung, D.W, Prins, K.C, Borek, D.M, Farahbakhsh, M, Tufariello, J.M, Ramanan, P, Nix, J.C, Helgeson, L.A, Otwinowski, Z, Honzatko, R.B, Basler, C.F, Amarasinghe, G.K. Deposit date: 2009-12-14 Release date: 2010-01-26 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural basis for dsRNA recognition and interferon antagonism by Ebola VP35. Nat.Struct.Mol.Biol., 17, 2010
6JE3	Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM) with 5 nt overhang Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, non-target DNA strand, ... Authors: Sun, W, Yang, J, Cheng, Z, Liu, C, Wang, K, Huang, X, Wang, Y. Deposit date: 2019-02-03 Release date: 2019-11-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.931 Å) Cite: Structures of Neisseria meningitidis Cas9 Complexes in Catalytically Poised and Anti-CRISPR-Inhibited States. Mol.Cell, 76, 2019
3L8U	Crystal structure of SMU.1707c, a putative rRNA methyltransferase from streptococcus mutans UA159 Descriptor: Putative rRNA methylase Authors: Gao, X.-Z, Wang, K.-T, Su, X.-D. Deposit date: 2010-01-04 Release date: 2011-01-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of SMU.1707c, a putative rRNA methyltransferase from streptococcus mutans UA159 To be published
1LMV	Solution structure of the unmodified U2 snRNA-intron branch site helix from S. cerevisiae Descriptor: 5'-R(*GP*GP*UP*GP*UP*AP*GP*UP*A)-3', 5'-R(*UP*AP*CP*UP*AP*AP*CP*AP*CP*C)-3' Authors: Newby, M.I, Greenbaum, N.L. Deposit date: 2002-05-02 Release date: 2002-11-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Sculpting of the Spliceosomal Branch Site Recognition Motif by a Conserved Pseudouridine Nat.Struct.Biol., 9, 2002
1LPW	Solution structure of the yeast spliceosomal U2 snRNA-intron branch site helix featuring a conserved pseudouridine Descriptor: 5'-R(*GP*GP*UP*GP*(PSU)P*AP*GP*UP*A)-3', 5'-R(*UP*AP*CP*UP*AP*AP*CP*AP*CP*C)-3' Authors: Newby, M.I, Greenbaum, N.L. Deposit date: 2002-05-08 Release date: 2002-11-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Sculpting of the Spliceosomal Branch Site Recognition Motif by a Conserved Pseudouridine Nat.Struct.Biol., 12, 2002
2ESJ	Complex between Lividomycin A and the 16S-Rrna A Site Descriptor: (2R,3S,4S,5S,6R)-2-((2S,3S,4R,5R,6R)-5-AMINO-2-(AMINOMETHYL)-6-((2R,3S,4R,5S)-5-((1R,2R,3S,5R,6S)-3,5-DIAMINO-2-((2S,3R ,5S,6R)-3-AMINO-5-HYDROXY-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-2-YLOXY)-6-HYDROXYCYCLOHEXYLOXY)-4-HYDROXY-2-(HYDROXYMET HYL)-TETRAHYDROFURAN-3-YLOXY)-4-HYDROXY-TETRAHYDRO-2H-PYRAN-3-YLOXY)-6-(HYDROXYMETHYL)-TETRAHYDRO-2H-PYRAN-3,4,5-TRIOL, 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' Authors: Westhof, E. Deposit date: 2005-10-26 Release date: 2005-12-20 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding Nucleic Acids Res., 33, 2005
2FZ2	Structure of Turnip Yellow Mosaic Virus at 100 K Descriptor: 5'-R(*CP*CP*C)-3', Coat protein Authors: Larson, S.B, Lucas, R.W, McPherson, A. Deposit date: 2006-02-08 Release date: 2006-02-21 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.9 Å) Cite: The RNA of turnip yellow mosaic virus exhibits icosahedral order. Virology, 334, 2005
1WFX	Crystal Structure of APE0204 from Aeropyrum pernix Descriptor: CHLORIDE ION, Probable RNA 2'-phosphotransferase, ZINC ION Authors: Kato-Murayama, M, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2004-05-27 Release date: 2004-11-27 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal Structure of the RNA 2'-Phosphotransferase from Aeropyrum pernix K1 J.Mol.Biol., 348, 2005
5XBL	Structure of nuclease in complex with associated protein Descriptor: Associated protein, CRISPR-associated endonuclease Cas9/Csn1, RNA (98-MER) Authors: Dong, D, Guo, M, Wang, S, Zhu, Y, Huang, Z. Deposit date: 2017-03-20 Release date: 2017-06-14 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (3.052 Å) Cite: Structural basis of CRISPR-SpyCas9 inhibition by an anti-CRISPR protein Nature, 546, 2017
1J3L	Structure of the RNA-processing inhibitor RraA from Thermus thermophilis Descriptor: CHLORIDE ION, Demethylmenaquinone Methyltransferase, MAGNESIUM ION Authors: Rehse, P.H, Miyano, M, Tahirov, T.H, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2003-02-04 Release date: 2004-02-17 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of the RNA-processing inhibitor RraA from Thermus thermophilis. Acta Crystallogr.,Sect.D, 60, 2004
7VA6	PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure Descriptor: IMIDAZOLE, Oligoribonuclease, RNA (5'-R(P*GP*U)-3') Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-27 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: PaOrn Oligoribonuclease D11A mutant with RNA GU complex structure To Be Published
2WHO	CRYSTAL STRUCTURE OF HEPATITIS C VIRUS NS5B POLYMERASE FROM 1B GENOTYPE IN COMPLEX WITH A NON-NUCLEOSIDE INHIBITOR Descriptor: 2-(3-bromophenyl)-6-[(2-hydroxyethyl)amino]-1h-benzo[de]isoquinoline-1,3(2h)-dione, MANGANESE (II) ION, RNA-DIRECTED RNA POLYMERASE Authors: Di Marco, S. Deposit date: 2009-05-05 Release date: 2009-08-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Identification and biological evaluation of a series of 1H-benzo[de]isoquinoline-1,3(2H)-diones as hepatitis C virus NS5B polymerase inhibitors. J. Med. Chem., 52, 2009
2HXY	Crystal structure of human apo-eIF4AIII Descriptor: Probable ATP-dependent RNA helicase DDX48 Authors: Johansen, J.S, Andersen, G.R. Deposit date: 2006-08-04 Release date: 2006-08-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science, 313, 2006
1U20	Crystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29 Descriptor: GLYCEROL, U8 snoRNA-binding protein X29 Authors: Scarsdale, J.N, Peculis, B.A, Wright, H.T. Deposit date: 2004-07-16 Release date: 2005-07-26 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal Structure of Xenopus laevis nudix hydrolase nuclear SnoRNA decapping Protein X29 TO BE PUBLISHED
4NRM	Crystal structure of human ALKBH5 in complex with citrate and acetate Descriptor: ACETATE ION, CITRATE ANION, RNA demethylase ALKBH5 Authors: Feng, C, Chen, Z, Liu, Y. Deposit date: 2013-11-27 Release date: 2014-03-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.17 Å) Cite: Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition J.Biol.Chem., 289, 2014
7JV7	Crystal Structure of the yeast RNA Pol II CTD kinase CTDK-1 complex Descriptor: CITRATE ANION, CTD kinase subunit alpha, CTD kinase subunit beta, ... Authors: Xie, Y, Ren, Y. Deposit date: 2020-08-20 Release date: 2021-01-27 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.850553 Å) Cite: Structure and activation mechanism of the yeast RNA Pol II CTD kinase CTDK-1 complex. Proc.Natl.Acad.Sci.USA, 118, 2021
7MEU	A biphenyl inhibitor of eIF4E targeting an internal binding site enables the design of cell-permeable PROTAC-degraders Descriptor: (2E)-2-{2-[4-([1,1'-biphenyl]-4-yl)-1,3-thiazol-2-yl]hydrazinylidene}-3-(2-nitrophenyl)propanoic acid, 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE, Eukaryotic translation initiation factor 4E Authors: Papadopoulos, E. Deposit date: 2021-04-07 Release date: 2021-04-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.91 Å) Cite: A biphenyl inhibitor of eIF4E targeting an internal binding site enables the design of cell-permeable PROTAC-degraders. Eur.J.Med.Chem., 219, 2021
4NRP	Crystal structure of human ALKBH5 in complex with N-oxalylglycine Descriptor: MANGANESE (II) ION, N-OXALYLGLYCINE, RNA demethylase ALKBH5 Authors: Feng, C, Chen, Z, Liu, Y. Deposit date: 2013-11-27 Release date: 2014-03-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition J.Biol.Chem., 289, 2014
4O7X	Crystal structure of human ALKBH5 in complex with Mn2+ Descriptor: MANGANESE (II) ION, RNA demethylase ALKBH5 Authors: Feng, C, Chen, Z, Liu, Y. Deposit date: 2013-12-26 Release date: 2014-03-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition J.Biol.Chem., 289, 2014
2PO0	Crystal structure of the P. abyssi exosome RNase PH ring complexed with ADP in double conformation Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, Probable exosome complex exonuclease 1, ... Authors: Navarro, M.V.A.S, Guimaraes, B.G. Deposit date: 2007-04-25 Release date: 2008-03-18 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Insights into the mechanism of progressive RNA degradation by the archaeal exosome. J.Biol.Chem., 283, 2008
2PO2	Crystal structure of the P. abyssi exosome RNase PH ring complexed with CDP Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CYTIDINE-5'-DIPHOSPHATE, Probable exosome complex exonuclease 1, ... Authors: Navarro, M.V.A.S, Guimaraes, B.G. Deposit date: 2007-04-25 Release date: 2008-03-18 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.41 Å) Cite: Insights into the mechanism of progressive RNA degradation by the archaeal exosome. J.Biol.Chem., 283, 2008
433D	CRYSTAL STRUCTURE OF A 14 BASE PAIR RNA DUPLEX WITH NONSYMMETRICAL TANDEM G.U WOBBLE BASE PAIRS Descriptor: 5'-R(*GP*GP*UP*AP*UP*UP*GP*CP*GP*GP*UP*AP*CP*C)-3' Authors: Trikha, J, Filman, D.J, Hogle, J.M. Deposit date: 1998-10-22 Release date: 1998-12-04 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of a 14 bp RNA duplex with non-symmetrical tandem GxU wobble base pairs. Nucleic Acids Res., 27, 1999
2PNZ	Crystal structure of the P. abyssi exosome RNase PH ring complexed with UDP and GMP Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-MONOPHOSPHATE, Probable exosome complex exonuclease 1, ... Authors: Navarro, M.V.A.S, Guimaraes, B.G. Deposit date: 2007-04-25 Release date: 2008-03-18 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.14 Å) Cite: Insights into the mechanism of progressive RNA degradation by the archaeal exosome. J.Biol.Chem., 283, 2008
5X2G	Crystal structure of Campylobacter jejuni Cas9 in complex with sgRNA and target DNA (AGAAACC PAM) Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas9, Non-target DNA strand, ... Authors: Yamada, M, Watanabe, Y, Hirano, H, Nakane, T, Ishitani, R, Nishimasu, H, Nureki, O. Deposit date: 2017-01-31 Release date: 2017-03-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of the Minimal Cas9 from Campylobacter jejuni Reveals the Molecular Diversity in the CRISPR-Cas9 Systems Mol. Cell, 65, 2017

<441442443444445446447448449450451452453454455456>