Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5T1A
DownloadVisualize
BU of 5t1a by Molmil
Structure of CC Chemokine Receptor 2 with Orthosteric and Allosteric Antagonists
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2~{R})-1-(4-chloranyl-2-fluoranyl-phenyl)-2-cyclohexyl-3-ethanoyl-4-oxidanyl-2~{H}-pyrrol-5-one, (3S)-1-{(1S,2R,4R)-4-[methyl(propan-2-yl)amino]-2-propylcyclohexyl}-3-{[6-(trifluoromethyl)quinazolin-4-yl]amino}pyrrolidin-2-one, ...
Authors:Zheng, Y, Qin, L, Ortiz Zacarias, N.V, de Vries, H, Han, G.W, Gustavsson, M, Dabros, M, Zhao, C, Cherney, R.J, Carter, P, Stamos, D, Abagyan, R, Cherezov, V, Stevens, R.C, IJzerman, A.P, Heitman, L.H, Tebben, A, Kufareva, I, Handel, T.M.
Deposit date:2016-08-18
Release date:2016-12-14
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.806 Å)
Cite:Structure of CC chemokine receptor 2 with orthosteric and allosteric antagonists.
Nature, 540, 2016
6L0L
DownloadVisualize
BU of 6l0l by Molmil
Hydra-1ubq de nova designed by Hydra based on ubiquitin
Descriptor: Hydra-1ubq
Authors:Ouyang, B.
Deposit date:2019-09-26
Release date:2020-09-30
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Multiobjective heuristic algorithm for de novo protein design in a quantified continuous sequence space.
Comput Struct Biotechnol J, 19, 2021
6MKM
DownloadVisualize
BU of 6mkm by Molmil
Crystallographic solvent mapping analysis of DMSO/Tris bound to APE1
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DIMETHYL SULFOXIDE, ...
Authors:Georgiadis, M.M, He, H, Chen, Q.
Deposit date:2018-09-25
Release date:2019-01-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.673 Å)
Cite:Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1.
J. Med. Chem., 62, 2019
6MK3
DownloadVisualize
BU of 6mk3 by Molmil
Crystallographic solvent mapping analysis of DMSO bound to APE1
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, DNA-(apurinic or apyrimidinic site) lyase
Authors:Georgiadis, M.M, He, H, Chen, Q.
Deposit date:2018-09-24
Release date:2019-01-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.478 Å)
Cite:Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1.
J. Med. Chem., 62, 2019
6MKO
DownloadVisualize
BU of 6mko by Molmil
Crystallographic solvent mapping analysis of glycerol bound to APE1
Descriptor: DNA-(apurinic or apyrimidinic site) lyase, GLYCEROL
Authors:Georgiadis, M.M, He, H, Chen, Q.
Deposit date:2018-09-25
Release date:2019-01-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1.
J. Med. Chem., 62, 2019
6MKK
DownloadVisualize
BU of 6mkk by Molmil
Crystallographic solvent mapping analysis of DMSO/Mg bound to APE1
Descriptor: 1,2-ETHANEDIOL, DIMETHYL SULFOXIDE, DNA-(apurinic or apyrimidinic site) lyase, ...
Authors:Georgiadis, M.M, He, H, Chen, Q.
Deposit date:2018-09-25
Release date:2019-01-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.442 Å)
Cite:Discovery of Macrocyclic Inhibitors of Apurinic/Apyrimidinic Endonuclease 1.
J. Med. Chem., 62, 2019
1J46
DownloadVisualize
BU of 1j46 by Molmil
3D Solution NMR Structure of the Wild Type HMG-BOX Domain of the Human Male Sex Determining Factor Sry Complexed to DNA
Descriptor: 5'-D(*CP*CP*TP*GP*CP*AP*CP*AP*AP*AP*CP*AP*CP*C)-3', 5'-D(*GP*GP*TP*GP*TP*TP*TP*GP*TP*GP*CP*AP*GP*G)-3', SEX-DETERMINING REGION Y PROTEIN
Authors:Clore, G.M, Murphy, E.C.
Deposit date:2001-07-23
Release date:2001-10-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation.
J.Mol.Biol., 312, 2001
1J47
DownloadVisualize
BU of 1j47 by Molmil
3D Solution NMR Structure of the M9I Mutant of the HMG-Box Domain of the Human Male Sex Determining Factor SRY Complexed to DNA
Descriptor: 5'-D(*CP*CP*TP*GP*CP*AP*CP*AP*AP*AP*CP*AP*CP*C)-3', 5'-D(*GP*GP*TP*GP*TP*TP*TP*GP*TP*GP*CP*AP*GP*G)-3', SEX-DETERMINING REGION Y PROTEIN
Authors:Clore, G.M, Murphy, E.C.
Deposit date:2001-07-23
Release date:2001-10-03
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structural basis for SRY-dependent 46-X,Y sex reversal: modulation of DNA bending by a naturally occurring point mutation.
J.Mol.Biol., 312, 2001
1J4V
DownloadVisualize
BU of 1j4v by Molmil
CYANOVIRIN-N
Descriptor: CYANOVIRIN-N
Authors:Clore, G.M, Bewley, C.A.
Deposit date:2001-11-21
Release date:2002-03-06
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Using conjoined rigid body/torsion angle simulated annealing to determine the relative orientation of covalently linked protein domains from dipolar couplings.
J.Magn.Reson., 154, 2002
4V7L
DownloadVisualize
BU of 4v7l by Molmil
The structures of viomycin bound to the 70S ribosome.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Stanley, R.E, Blaha, G.
Deposit date:2009-11-12
Release date:2014-07-09
Last modified:2018-07-11
Method:X-RAY DIFFRACTION (3 Å)
Cite:The structures of the anti-tuberculosis antibiotics viomycin and capreomycin bound to the 70S ribosome.
Nat.Struct.Mol.Biol., 17, 2010
4V8C
DownloadVisualize
BU of 4v8c by Molmil
Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).
Descriptor: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
Authors:Jenner, L, Demeshkina, N, Yusupov, M, Yusupova, G.
Deposit date:2011-12-07
Release date:2014-07-09
Last modified:2017-11-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
4V87
DownloadVisualize
BU of 4v87 by Molmil
Crystal structure analysis of ribosomal decoding.
Descriptor: 16S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ...
Authors:Demeshkina, N, Jenner, L, Yusupov, M, Yusupova, G.
Deposit date:2011-09-20
Release date:2014-07-09
Last modified:2014-12-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:A new understanding of the decoding principle on the ribosome.
Nature, 484, 2012
3K2K
DownloadVisualize
BU of 3k2k by Molmil
Crystal structure of putative carboxypeptidase (YP_103406.1) from BURKHOLDERIA MALLEI ATCC 23344 at 2.49 A resolution
Descriptor: CHLORIDE ION, GLYCEROL, putative carboxypeptidase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-09-30
Release date:2009-11-03
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of putative carboxypeptidase (YP_103406.1) from BURKHOLDERIA MALLEI ATCC 23344 at 2.49 A resolution
To be published
3K69
DownloadVisualize
BU of 3k69 by Molmil
CRYSTAL STRUCTURE OF A PUTATIVE TRANSCRIPTIONAL REGULATOR (LP_0360) FROM LACTOBACILLUS PLANTARUM AT 1.95 A RESOLUTION
Descriptor: DIMETHYL SULFOXIDE, Putative transcription regulator
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-10-08
Release date:2009-11-03
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal structure of Putative transcriptional regulator (NP_784167.1) from LACTOBACILLUS PLANTARUM at 1.95 A resolution
To be published
3JSO
DownloadVisualize
BU of 3jso by Molmil
Classic Protein With a New Twist: crystal structure of a LexA repressor DNA complex
Descriptor: DNA (5'-D(*TP*AP*TP*AP*CP*TP*GP*TP*AP*TP*AP*TP*AP*TP*AP*TP*AP*CP*AP*GP*TP*A)-3'), LexA repressor
Authors:Zhang, A.P.P, Pigli, Y.Z, Rice, P.A.
Deposit date:2009-09-10
Release date:2010-08-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Structure of the LexA-DNA complex and implications for SOS box measurement.
Nature, 466, 2010
3K9T
DownloadVisualize
BU of 3k9t by Molmil
Crystal structure of putative peptidase (NP_348812.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.37 A resolution
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, CHLORIDE ION, IMIDAZOLE, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-10-16
Release date:2009-11-10
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.37 Å)
Cite:Crystal structure of putative peptidase (NP_348812.1) from CLOSTRIDIUM ACETOBUTYLICUM at 2.37 A resolution
To be published
3K6Q
DownloadVisualize
BU of 3k6q by Molmil
CRYSTAL STRUCTURE OF An antitoxin part of a putative toxin/antitoxin system (SWOL_0700) FROM SYNTROPHOMONAS WOLFEI SUBSP. WOLFEI AT 1.80 A RESOLUTION
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-10-09
Release date:2009-10-27
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Putative ligand binding protein (YP_753395.1) from Syntrophomonas wolfei str. Goettingen at 1.80 A resolution
To be published
3JR1
DownloadVisualize
BU of 3jr1 by Molmil
Crystal structure of Putative fructosamine-3-kinase (YP_719053.1) from HAEMOPHILUS SOMNUS 129PT at 2.32 A resolution
Descriptor: 1,2-ETHANEDIOL, Putative fructosamine-3-kinase, UNKNOWN LIGAND
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-09-08
Release date:2009-09-15
Last modified:2019-07-24
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Crystal structure of Putative fructosamine-3-kinase (YP_719053.1) from HAEMOPHILUS SOMNUS 129PT at 2.32 A resolution
To be published
3JZ6
DownloadVisualize
BU of 3jz6 by Molmil
Crystal structure of Mycobacterium smegmatis Branched Chain Aminotransferase in complex with pyridoxal-5'-phosphate at 1.9 angstrom.
Descriptor: Branched-chain amino acid aminotransferase, GLYCEROL, PYRIDOXAL-5'-PHOSPHATE
Authors:Castell, A, Mille, C, Unge, T.
Deposit date:2009-09-23
Release date:2010-05-05
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural analysis of mycobacterial branched-chain aminotransferase: implications for inhibitor design.
Acta Crystallogr.,Sect.D, 66, 2010
3K29
DownloadVisualize
BU of 3k29 by Molmil
Structure of a putative YscO homolog CT670 from Chlamydia trachomatis
Descriptor: Putative uncharacterized protein
Authors:Lam, R, Singer, A, Skarina, T, Onopriyenko, O, Bochkarev, A, Brunzelle, J.S, Edwards, A.M, Anderson, W.F, Chirgadze, N.Y, Savchenko, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2009-09-29
Release date:2009-10-13
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and protein-protein interaction studies on Chlamydia trachomatis protein CT670 (YscO Homolog).
J.Bacteriol., 192, 2010
3JQF
DownloadVisualize
BU of 3jqf by Molmil
Crystal structure of pteridine reductase 1 (PTR1) from Trypanosoma brucei in ternary complex with cofactor (NADP+) and inhibitor 1,3,5-triazine-2,4,6-triamine (AX2)
Descriptor: (4S,5S)-1,2-DITHIANE-4,5-DIOL, 1,3,5-triazine-2,4,6-triamine, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, ...
Authors:Tulloch, L.B, Hunter, W.N.
Deposit date:2009-09-06
Release date:2009-12-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structure-based design of pteridine reductase inhibitors targeting african sleeping sickness and the leishmaniases.
J.Med.Chem., 53, 2010
3K2V
DownloadVisualize
BU of 3k2v by Molmil
Structure of the CBS pair of a putative D-arabinose 5-phosphate isomerase from Klebsiella pneumoniae subsp. pneumoniae.
Descriptor: CYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2-ULO-PYRANOSONIC ACID, GLYCEROL, SULFATE ION, ...
Authors:Cuff, M.E, Volkart, L, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2009-09-30
Release date:2009-12-22
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure of the CBS pair of a putative D-arabinose 5-phosphate isomerase from Klebsiella pneumoniae subsp. pneumoniae.
TO BE PUBLISHED
3K8K
DownloadVisualize
BU of 3k8k by Molmil
Crystal structure of SusG
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Alpha-amylase, ...
Authors:Koropatkin, N.M, Smith, T.J.
Deposit date:2009-10-14
Release date:2010-03-02
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules.
Structure, 18, 2010
3JWH
DownloadVisualize
BU of 3jwh by Molmil
Crystal structure analysis of the methyltransferase domain of bacterial-AvHen1-C
Descriptor: Hen1, S-ADENOSYL-L-HOMOCYSTEINE
Authors:Huang, R.H, Chan, C.M, Zhou, C, Brunzelle, J.S.
Deposit date:2009-09-18
Release date:2009-10-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and biochemical insights into 2'-O-methylation at the 3'-terminal nucleotide of RNA by Hen1.
Proc.Natl.Acad.Sci.USA, 106, 2009
3KAE
DownloadVisualize
BU of 3kae by Molmil
Cdc27 N-terminus
Descriptor: CHLORIDE ION, GLYCEROL, Possible protein of nuclear scaffold, ...
Authors:Barford, D, Zhang, Z, Roe, S.M.
Deposit date:2009-10-19
Release date:2010-03-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.298 Å)
Cite:Molecular structure of the N-terminal domain of the APC/C subunit Cdc27 reveals a homo-dimeric tetratricopeptide repeat architecture
J.Mol.Biol., 397, 2010

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon