Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 243 results

4RCK
DownloadVisualize
BU of 4rck by Molmil
Crystal Structure of Uncharacterized Membrane Spanning Protein from Vibrio fischeri
Descriptor: Hypothetical membrane spanning protein, MAGNESIUM ION
Authors:Kim, Y, Tesar, C, Bearden, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2014-09-16
Release date:2014-11-26
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Crystal Structure of Uncharacterized Membrane Spanning Protein from Vibrio fischeri
To be Published
7A6O
DownloadVisualize
BU of 7a6o by Molmil
Crystal Structure of the Complex of the Recombinant Von Willebrand Factor AIM-A1 domain and VHH81 at 2.1 Angstrom resolution
Descriptor: SULFATE ION, VHH81 Nanobody fragment, von Willebrand factor
Authors:Brown, A.K, Emsley, J.
Deposit date:2020-08-25
Release date:2021-03-03
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.117 Å)
Cite:Activation of von Willebrand factor via mechanical unfolding of its discontinuous autoinhibitory module.
Nat Commun, 12, 2021
4XW2
DownloadVisualize
BU of 4xw2 by Molmil
Structural basis for simvastatin competitive antagonism of complement receptor 3
Descriptor: Integrin alpha-M, MAGNESIUM ION, Simvastatin acid
Authors:Bajic, G, Jensen, M.R, Vorup-Jensen, T, Andersen, G.R.
Deposit date:2015-01-28
Release date:2016-01-13
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural Basis for Simvastatin Competitive Antagonism of Complement Receptor 3.
J.Biol.Chem., 291, 2016
7F49
DownloadVisualize
BU of 7f49 by Molmil
von Willebrand factor (VWF) A1 domain with BT-100 aptamer RNA
Descriptor: BT-100, GLYCEROL, von Willebrand factor
Authors:Zhu, S.
Deposit date:2021-06-18
Release date:2021-07-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:The development and characterization of a long acting anti-thrombotic von Willebrand factor (VWF) aptamer
J Thromb Haemost., 18, 2020
7EOW
DownloadVisualize
BU of 7eow by Molmil
High-resolution structure of vWF A1 domain in complex with caplacizumab, the first nanobody-based medicine
Descriptor: caplacizumab, von Willebrand factor
Authors:Lee, H.T, Heo, Y.-S.
Deposit date:2021-04-23
Release date:2021-07-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:High-resolution structure of the vWF A1 domain in complex with caplacizumab, the first nanobody-based medicine for treating acquired TTP.
Biochem.Biophys.Res.Commun., 567, 2021
2B2X
DownloadVisualize
BU of 2b2x by Molmil
VLA1 RdeltaH I-domain complexed with a quadruple mutant of the AQC2 Fab
Descriptor: Antibody AQC2 Fab, Integrin alpha-1, MAGNESIUM ION
Authors:Clark, L.A, Boriack-Sjodin, P.A, Eldredge, J, Fitch, C, Friedman, B, Hanf, K.J, Jarpe, M, Liparoto, S.F, Li, Y, Lugovskoy, A.
Deposit date:2005-09-19
Release date:2006-04-18
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Affinity enhancement of an in vivo matured therapeutic antibody using structure-based computational design
Protein Sci., 15, 2006
1ZOP
DownloadVisualize
BU of 1zop by Molmil
CD11A I-DOMAIN WITH BOUND MAGNESIUM ION
Descriptor: CHLORIDE ION, I-DOMAIN FRAGMENT OF LFA-1, MANGANESE (II) ION
Authors:Leahy, D.J, Qu, A.
Deposit date:1996-06-21
Release date:1996-12-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:The role of the divalent cation in the structure of the I domain from the CD11a/CD18 integrin.
Structure, 4, 1996
1ZOO
DownloadVisualize
BU of 1zoo by Molmil
CD11A I-DOMAIN WITH BOUND MAGNESIUM ION
Descriptor: CHLORIDE ION, LEUKOCYTE ADHESION GLYCOPROTEIN, MAGNESIUM ION
Authors:Leahy, D.J, Qu, A.
Deposit date:1996-06-21
Release date:1996-12-07
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3 Å)
Cite:The role of the divalent cation in the structure of the I domain from the CD11a/CD18 integrin.
Structure, 4, 1996
1ZON
DownloadVisualize
BU of 1zon by Molmil
CD11A I-DOMAIN WITHOUT BOUND CATION
Descriptor: LEUKOCYTE ADHESION GLYCOPROTEIN
Authors:Leahy, D.J, Qu, A.
Deposit date:1996-06-20
Release date:1996-12-07
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:The role of the divalent cation in the structure of the I domain from the CD11a/CD18 integrin.
Structure, 4, 1996
3M6F
DownloadVisualize
BU of 3m6f by Molmil
CD11A I-domain complexed with 6-((5S,9R)-9-(4-CYANOPHENYL)-3-(3,5-DICHLOROPHENYL)-1-METHYL-2,4-DIOXO-1,3,7- TRIAZASPIRO[4.4]NON-7-YL)NICOTINIC ACID
Descriptor: 6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non-7-yl]pyridine-3-carboxylic acid, Integrin alpha-L, NITRATE ION
Authors:Sheriff, S.
Deposit date:2010-03-15
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Small molecule antagonist of leukocyte function associated antigen-1 (LFA-1): structure-activity relationships leading to the identification of 6-((5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]nonan-7-yl)nicotinic acid (BMS-688521).
J.Med.Chem., 53, 2010
3N2N
DownloadVisualize
BU of 3n2n by Molmil
The Crystal Structure of Tumor Endothelial Marker 8 (TEM8) extracellular domain
Descriptor: ACETATE ION, Anthrax toxin receptor 1, MAGNESIUM ION
Authors:Fu, S, Tong, X.H, Wu, Y, Li, Y.Y, Rao, Z.H.
Deposit date:2010-05-18
Release date:2011-01-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The structure of tumor endothelial marker 8 (TEM8) extracellular domain and implications for its receptor function for recognizing anthrax toxin.
Plos One, 5, 2010
2ICA
DownloadVisualize
BU of 2ica by Molmil
CD11a (LFA1) I-domain complexed with BMS-587101 aka 5-[(5S, 9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro [4.4]non-7-yl]methyl]-3-thiophenecarboxylicacid
Descriptor: 5-[(5S,9R)-9-(4-CYANOPHENYL)-3-(3,5-DICHLOROPHENYL)-1-METHYL-2,4-DIOXO-1,3,7-TRIAZASPIRO [4.4]NON-7-YL]METHYL]-3-THIOPHENECARBOXYLICACID, Integrin alpha-L
Authors:Sheriff, S, Einspahr, H.
Deposit date:2006-09-12
Release date:2006-12-19
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Discovery and Development of 5-[(5S,9R)-9- (4-Cyanophenyl)-3-(3,5-dichlorophenyl)-1- methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non- 7-yl-methyl]-3-thiophenecarboxylic acid (BMS-587101)-A Small Molecule Antagonist Leukocyte Function Associated Antigen-1.
J.Med.Chem., 49, 2006
3TW0
DownloadVisualize
BU of 3tw0 by Molmil
Structural Analysis of Adhesive Tip pilin, GBS104 from Group B Streptococcus agalactiae
Descriptor: ACETATE ION, Cell wall surface anchor family protein, MAGNESIUM ION
Authors:Krishnan, V, Narayana, S.V.L.
Deposit date:2011-09-21
Release date:2013-03-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Streptococcus agalactiae tip pilin GBS104: a model for GBS pili assembly and host interactions.
Acta Crystallogr.,Sect.D, 69, 2013
5HJ2
DownloadVisualize
BU of 5hj2 by Molmil
Integrin alpha2beta1 I-domain
Descriptor: CALCIUM ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Brown, K.L, Banerjee, S.
Deposit date:2016-01-12
Release date:2017-04-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.153 Å)
Cite:Salt-bridge modulates differential calcium-mediated ligand binding to integrin alpha 1- and alpha 2-I domains.
Sci Rep, 8, 2018
1XDG
DownloadVisualize
BU of 1xdg by Molmil
X-ray structure of LFA-1 I-domain in complex with LFA878 at 2.1A resolution
Descriptor: (1S,3R,8AS)-8-(2-{(4S,6S)-3-(4-HYDROXY-3-METHOXYBENZYL)-4-[2-(METHYLAMINO)-2-OXOETHYL]-2-OXO-1,3-OXAZINAN-6-YL}ETHYL)-3 ,7-DIMETHYL-1,2,3,7,8,8A-HEXAHYDRONAPHTHALEN-1-YL (2R)-2-METHYLBUTANOATE, Integrin alpha-L, MAGNESIUM ION
Authors:Weitz-Schmidt, G, Welzenbach, K, Dawson, J, Kallen, J.
Deposit date:2004-09-06
Release date:2004-09-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Improved lymphocyte function-associated antigen-1 (LFA-1) inhibition by statin derivatives: molecular basis determined by x-ray analysis and monitoring of LFA-1 conformational changes in vitro and ex vivo
J.Biol.Chem., 279, 2004
1XDD
DownloadVisualize
BU of 1xdd by Molmil
X-ray structure of LFA-1 I-domain in complex with LFA703 at 2.2A resolution
Descriptor: 8-[2-((2S)-4-HYDROXY-1-{[5-(HYDROXYMETHYL)-6-METHOXY-2-NAPHTHYL]METHYL}-6-OXOPIPERIDIN-2-YL)ETHYL]-3,7-DIMETHYL-1,2,3,7,8,8A-HEXAHYDRONAPHTHALEN-1-YL 2-METHYLBUTANOATE, Integrin alpha-L, MAGNESIUM ION
Authors:Weitz-Schmidt, G, Welzenbach, K, Dawson, J, Kallen, J.
Deposit date:2004-09-06
Release date:2004-09-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Improved lymphocyte function-associated antigen-1 (LFA-1) inhibition by statin derivatives: molecular basis determined by x-ray analysis and monitoring of LFA-1 conformational changes in vitro and ex vivo
J.Biol.Chem., 279, 2004
8CE9
DownloadVisualize
BU of 8ce9 by Molmil
Crystal structure of human Cd11b I domain in C121 space group
Descriptor: 1,2-ETHANEDIOL, Integrin alpha-M, SULFATE ION
Authors:Koekemoer, L, Williams, E, Ni, X, Gao, Q, Coker, J, MacLean, E.M, Wright, N.D, Marsden, B, Von Delft, F, Schwenzer, A, Midwood, K.
Deposit date:2023-02-01
Release date:2023-03-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Crystal structure of human Cd11b I domain in C121 space group
To Be Published
8CE6
DownloadVisualize
BU of 8ce6 by Molmil
Crystal structure of human Cd11b I domain in P212121 space group
Descriptor: CHLORIDE ION, GLYCEROL, Integrin alpha-M, ...
Authors:Koekemoer, L, Williams, E, Ni, X, Gao, Q, Coker, J, MacLean, E.M, Wright, N.D, Marsden, B, Von Delft, F, Schwenzer, A, Midwood, K.
Deposit date:2023-02-01
Release date:2023-03-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.582 Å)
Cite:Crystal structure of human Cd11b I domain in P212121 space group
To Be Published
5HGJ
DownloadVisualize
BU of 5hgj by Molmil
Structure of integrin alpha1beta1 and alpha2beta1 I-domains explain differential calcium-mediated ligand recognition
Descriptor: CALCIUM ION, CHLORIDE ION, GLYCEROL, ...
Authors:Brown, K.L, Banerjee, S, Feigley, A, Abe, H, Blackwell, T, Zent, R, Pozzi, A, Hudson, B.H.
Deposit date:2016-01-08
Release date:2017-04-12
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.399 Å)
Cite:Salt-bridge modulates differential calcium-mediated ligand binding to integrin alpha 1- and alpha 2-I domains.
Sci Rep, 8, 2018
1XUO
DownloadVisualize
BU of 1xuo by Molmil
X-ray structure of LFA-1 I-domain bound to a 1,4-diazepane-2,5-dione inhibitor at 1.8A resolution
Descriptor: (2R)-2-[3-ISOBUTYL-2,5-DIOXO-4-(QUINOLIN-3-YLMETHYL)-1,4-DIAZEPAN-1-YL]-N-METHYL-3-(2-NAPHTHYL)PROPANAMIDE, Integrin alpha-L, MAGNESIUM ION
Authors:Wattanasin, S, Kallen, J, Myers, S, Guo, Q, Sabio, M, Ehrhardt, C, Albert, R, Hommel, U, Weckbecker, G, Welzenbach, K.
Deposit date:2004-10-26
Release date:2005-10-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:1,4-Diazepane-2,5-diones as novel inhibitors of LFA-1
Bioorg.Med.Chem.Lett., 15, 2005
3TVY
DownloadVisualize
BU of 3tvy by Molmil
Structural Analysis of Adhesive Tip pilin, GBS104 from Group B Streptococcus agalactiae
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Cell wall surface anchor family protein, MAGNESIUM ION
Authors:Krishnan, V, Narayana, S.V.L.
Deposit date:2011-09-21
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Streptococcus agalactiae tip pilin GBS104: a model for GBS pili assembly and host interactions.
Acta Crystallogr.,Sect.D, 69, 2013
1IDN
DownloadVisualize
BU of 1idn by Molmil
MAC-1 I DOMAIN METAL FREE
Descriptor: CD11B
Authors:Baldwin, E.T.
Deposit date:1998-06-10
Release date:1998-11-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Cation binding to the integrin CD11b I domain and activation model assessment
Structure, 6, 1998
1IJB
DownloadVisualize
BU of 1ijb by Molmil
The von Willebrand Factor mutant (I546V) A1 domain
Descriptor: von Willebrand factor
Authors:Fukuda, K, Doggett, T.A, Bankston, L.A, Cruz, M.A, Diacovo, T.G, Liddington, R.C.
Deposit date:2001-04-25
Release date:2002-07-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis of von Willebrand factor activation by the snake toxin botrocetin.
Structure, 10, 2002
1JLM
DownloadVisualize
BU of 1jlm by Molmil
I-DOMAIN FROM INTEGRIN CR3, MN2+ BOUND
Descriptor: INTEGRIN, MANGANESE (II) ION
Authors:Lee, J.-O, Liddington, R.
Deposit date:1996-04-09
Release date:1997-01-11
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two conformations of the integrin A-domain (I-domain): a pathway for activation?
Structure, 3, 1995
1IDO
DownloadVisualize
BU of 1ido by Molmil
I-DOMAIN FROM INTEGRIN CR3, MG2+ BOUND
Descriptor: INTEGRIN, MAGNESIUM ION
Authors:Lee, J.-O, Liddington, R.
Deposit date:1996-03-12
Release date:1996-08-01
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the A domain from the alpha subunit of integrin CR3 (CD11b/CD18).
Cell(Cambridge,Mass.), 80, 1995

236371

PDB entries from 2025-05-21

PDB statisticsPDBj update infoContact PDBjnumon