Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5HS8
DownloadVisualize
BU of 5hs8 by Molmil
Crystal structure of the diamide-treated YodB from B. subtilis
Descriptor: HTH-type transcriptional regulator YodB
Authors:Lee, S.J, Lee, I.G, Lee, B.J.
Deposit date:2016-01-25
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Two distinct mechanisms of transcriptional regulation by the redox sensor YodB
Proc.Natl.Acad.Sci.USA, 113, 2016
3HHG
DownloadVisualize
BU of 3hhg by Molmil
Structure of CrgA, a LysR-type transcriptional regulator from Neisseria meningitidis.
Descriptor: Transcriptional regulator, LysR family
Authors:Sainsbury, S, Ren, J, Owens, R.J, Stuart, D.I, Oxford Protein Production Facility (OPPF)
Deposit date:2009-05-15
Release date:2009-07-07
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:The structure of CrgA from Neisseria meningitidis reveals a new octameric assembly state for LysR transcriptional regulators
Nucleic Acids Res., 37, 2009
4A0X
DownloadVisualize
BU of 4a0x by Molmil
Structure of the global transcription regulator FapR from Staphylococcus aureus
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, ACETATE ION, TRANSCRIPTION FACTOR FAPR, ...
Authors:Albanesi, D, Guerin, M.E, Buschiazzo, A, de Mendoza, D, Alzari, P.M.
Deposit date:2011-09-13
Release date:2012-09-26
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural Basis for Feed-Forward Transcriptional Regulation of Membrane Lipid Homeostasis in Staphylococcus Aureus.
Plos Pathog., 9, 2013
3KEO
DownloadVisualize
BU of 3keo by Molmil
Crystal Structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+
Descriptor: CHLORIDE ION, MAGNESIUM ION, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:Thiyagarajan, S, Logan, D, von Wachenfeldt, C.
Deposit date:2009-10-26
Release date:2010-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:NAD+ pool depletion as a signal for the Rex regulon involved in Streptococcus agalactiae virulence.
Plos Pathog., 17, 2021
3KEQ
DownloadVisualize
BU of 3keq by Molmil
Crystal structure of a Rex-family transcriptional regulatory protein from Streptococcus agalactiae complexed with NAD+
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Redox-sensing transcriptional repressor rex
Authors:Thiyagarajan, S, Logan, D, von Wachenfeldt, C.
Deposit date:2009-10-26
Release date:2010-11-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:NAD+ pool depletion as a signal for the Rex regulon involved in Streptococcus agalactiae virulence.
Plos Pathog., 17, 2021
3OD2
DownloadVisualize
BU of 3od2 by Molmil
E. coli NikR soaked with excess nickel ions
Descriptor: 3-CYCLOHEXYLPROPYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D-GLUCOPYRANOSIDE, NICKEL (II) ION, Nickel-responsive regulatory protein
Authors:Phillips, C.M, Schreiter, E.R, Drennan, C.L.
Deposit date:2010-08-10
Release date:2010-09-08
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural basis of low-affinity nickel binding to the nickel-responsive transcription factor NikR from Escherichia coli.
Biochemistry, 49, 2010
2D6Y
DownloadVisualize
BU of 2d6y by Molmil
Crystal Structure of transcriptional factor SCO4008 from Streptomyces coelicolor A3(2)
Descriptor: L(+)-TARTARIC ACID, putative tetR family regulatory protein
Authors:Hayashi, T, Tanaka, Y, Sakai, N, Yao, M, Tamura, T, Tanaka, I.
Deposit date:2005-11-15
Release date:2006-10-31
Last modified:2013-09-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:SCO4008, a Putative TetR Transcriptional Repressor from Streptomyces coelicolor A3(2), Regulates Transcription of sco4007 by Multidrug Recognition.
J.Mol.Biol., 425, 2013
2Q24
DownloadVisualize
BU of 2q24 by Molmil
Crystal structure of TetR transcriptional regulator SCO0520 from Streptomyces coelicolor
Descriptor: ACETATE ION, CHLORIDE ION, Putative tetR family transcriptional regulator
Authors:Cymborowski, M, Chruszcz, M, Koclega, K.D, Filippova, E.V, Xu, X, Gu, J, Savchenko, A, Edwards, A.M, Joachimiak, A, Minor, W, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-05-25
Release date:2007-07-03
Last modified:2022-04-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of a putative transcriptional regulator SCO0520 from Streptomyces coelicolor A3(2) reveals an unusual dimer among TetR family proteins.
J.Struct.Funct.Genom., 12, 2011
5XPT
DownloadVisualize
BU of 5xpt by Molmil
Crystal structure of MAD2L2/REV7 in complex with a CAMP fragment in a tetragonal crystal
Descriptor: Chromosome alignment-maintaining phosphoprotein 1, Mitotic spindle assembly checkpoint protein MAD2B
Authors:Hara, K, Taharazako, S, Hashimoto, H.
Deposit date:2017-06-05
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Dynamic feature of mitotic arrest deficient 2-like protein 2 (MAD2L2) and structural basis for its interaction with chromosome alignment-maintaining phosphoprotein (CAMP).
J. Biol. Chem., 292, 2017
2ZOZ
DownloadVisualize
BU of 2zoz by Molmil
Crystal structure of the ethidium-bound form of the multi-drug binding transcriptional repressor CgmR
Descriptor: ETHIDIUM, GLYCEROL, SULFATE ION, ...
Authors:Itou, H, Shirakihara, Y, Tanaka, I.
Deposit date:2008-06-20
Release date:2008-07-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Crystal Structures of the Multidrug Binding Repressor Corynebacteriumglutamicum CgmR in Complex with Inducers and with an Operator
J.Mol.Biol., 403, 2010
2TRT
DownloadVisualize
BU of 2trt by Molmil
TETRACYCLINE REPRESSOR CLASS D
Descriptor: MAGNESIUM ION, TETRACYCLINE, TETRACYCLINE REPRESSOR CLASS D
Authors:Hinrichs, W, Kisker, C, Saenger, W.
Deposit date:1994-03-04
Release date:1996-06-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of the Tet repressor-tetracycline complex and regulation of antibiotic resistance.
Science, 264, 1994
5YEK
DownloadVisualize
BU of 5yek by Molmil
Crystal structure of BioQ
Descriptor: TetR family transcriptional regulator
Authors:Yan, L, Guan, Z.Y, Zou, T.T.
Deposit date:2017-09-17
Release date:2018-09-26
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.191 Å)
Cite:Structural insights into operator recognition by BioQ in the Mycobacterium smegmatis biotin synthesis pathway.
Biochim Biophys Acta Gen Subj, 1862, 2018
6MYZ
DownloadVisualize
BU of 6myz by Molmil
Crystal structure of Tdp1 catalytic domain in complex with compound XZ520
Descriptor: 1,2-ETHANEDIOL, 4-oxo-8-phenyl-1,4-dihydroquinoline-3-carboxylic acid, Tyrosyl-DNA phosphodiesterase 1
Authors:Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S.
Deposit date:2018-11-02
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.661 Å)
Cite:Structure of Tdp1 catalytic domain in complex with compound XZ520
To Be Published
6MZ0
DownloadVisualize
BU of 6mz0 by Molmil
Crystal structure of Tdp1 catalytic domain in complex with compound XZ530
Descriptor: 1,2-ETHANEDIOL, 5-hydroxypyrazine-2,3-dicarboxylic acid, Tyrosyl-DNA phosphodiesterase 1
Authors:Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Burke Jr, T.R, Pommier, Y, Waugh, D.S.
Deposit date:2018-11-02
Release date:2019-11-06
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.969 Å)
Cite:Structure of Tdp1 catalytic domain in complex with compound XZ530
To Be Published
7EL2
DownloadVisualize
BU of 7el2 by Molmil
Crystal structure of apo-HpaR from Acinetobacter baumannii
Descriptor: Homoprotocatechuate degradation operon regulator HpaR
Authors:Permsirivisarn, P, Pakotiprapha, D.
Deposit date:2021-04-07
Release date:2022-01-19
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mechanism of transcription regulation by Acinetobacter baumannii HpaR in the catabolism of p-hydroxyphenylacetate.
Febs J., 289, 2022
5OTN
DownloadVisualize
BU of 5otn by Molmil
Crystal structure of zebrafish MTH1 in complex with O6-methyl-dGMP
Descriptor: 1,2-ETHANEDIOL, 6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE, CALCIUM ION, ...
Authors:Gustafsson, R, Henriksson, L, Jemth, A.-S, Brautigam, L, Carreras Puigvert, J, Homan, E, Warpman Berglund, U, Helleday, T, Stenmark, P.
Deposit date:2017-08-22
Release date:2018-09-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.99 Å)
Cite:MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP.
Nucleic Acids Res., 46, 2018
7ZT6
DownloadVisualize
BU of 7zt6 by Molmil
Cryo-EM structure of Ku 70/80 bound to inositol hexakisphosphate
Descriptor: INOSITOL HEXAKISPHOSPHATE, X-ray repair cross-complementing protein 5, X-ray repair cross-complementing protein 6
Authors:Kefala Stavridi, A, Chaplin, A.K, Blundell, T.L.
Deposit date:2022-05-09
Release date:2023-05-17
Last modified:2023-12-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural and functional basis of inositol hexaphosphate stimulation of NHEJ through stabilization of Ku-XLF interaction.
Nucleic Acids Res., 51, 2023
7O9M
DownloadVisualize
BU of 7o9m by Molmil
Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1 and the MALSU module
Descriptor: 16S rRNA, 39S ribosomal protein L10, mitochondrial, ...
Authors:Valentin Gese, G, Hallberg, B.M.
Deposit date:2021-04-16
Release date:2021-06-30
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structural basis for late maturation steps of the human mitoribosomal large subunit.
Nat Commun, 12, 2021
2HYF
DownloadVisualize
BU of 2hyf by Molmil
The Structure of apo-MntR from Bacillus subtilis, selenomethionine derivative
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, SULFATE ION, Transcriptional regulator mntR
Authors:Glasfeld, A.
Deposit date:2006-08-06
Release date:2006-11-07
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The conformations of the manganese transport regulator of Bacillus subtilis in its metal-free state.
J.Mol.Biol., 365, 2007
2OEN
DownloadVisualize
BU of 2oen by Molmil
Structural mechanism for the fine-tuning of CcpA function by the small molecule effectors glucose-6-phosphate and fructose-1,6-bisphosphate
Descriptor: Catabolite control protein, Phosphocarrier protein HPr
Authors:Schumacher, M.A, Seidel, G, Hillen, W, Brennan, R.G.
Deposit date:2006-12-30
Release date:2007-05-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.17 Å)
Cite:Structural Mechanism for the Fine-tuning of CcpA Function by The Small Molecule Effectors Glucose 6-Phosphate and Fructose 1,6-Bisphosphate.
J.Mol.Biol., 368, 2007
4K0R
DownloadVisualize
BU of 4k0r by Molmil
Crystal structure of mouse Cryptochrome 1
Descriptor: Cryptochrome-1
Authors:Czarna, A, Wolf, E.
Deposit date:2013-04-04
Release date:2013-06-26
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Structures of Drosophila cryptochrome and mouse cryptochrome1 provide insight into circadian function.
Cell(Cambridge,Mass.), 153, 2013
4AA6
DownloadVisualize
BU of 4aa6 by Molmil
The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation
Descriptor: 5'-D(*CP*TP*AP*AP*GP*TP*CP*AP*CP*AP*GP*TP*GP*AP *CP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*GP*TP*CP*AP*CP*TP*GP*TP*GP*AP *CP*TP*TP*A)-3', ESTROGEN RECEPTOR, ...
Authors:Schwabe, J.W, Chapman, L, Rhodes, D.
Deposit date:2011-11-30
Release date:2011-12-14
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The oestrogen receptor recognizes an imperfectly palindromic response element through an alternative side-chain conformation.
Structure, 3, 1995
5XPU
DownloadVisualize
BU of 5xpu by Molmil
Crystal structure of MAD2L2/REV7 in complex with a CAMP fragment in a monoclinic crystal
Descriptor: Chromosome alignment-maintaining phosphoprotein 1, Mitotic spindle assembly checkpoint protein MAD2B
Authors:Hara, K, Taharazako, S, Hashimoto, H.
Deposit date:2017-06-05
Release date:2017-09-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.304 Å)
Cite:Dynamic feature of mitotic arrest deficient 2-like protein 2 (MAD2L2) and structural basis for its interaction with chromosome alignment-maintaining phosphoprotein (CAMP).
J. Biol. Chem., 292, 2017
2VT3
DownloadVisualize
BU of 2vt3 by Molmil
Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, REDOX-SENSING TRANSCRIPTIONAL REPRESSOR REX
Authors:Wang, E, Bauer, M.C, Rogstam, A, Linse, S, Logan, D, von Wachenfeldt, C.
Deposit date:2008-05-08
Release date:2008-09-09
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex.
Mol. Microbiol., 69, 2008
2HYG
DownloadVisualize
BU of 2hyg by Molmil
The Structure of apo-MntR from Bacillus subtilis, Native Form
Descriptor: Transcriptional regulator mntR
Authors:Glasfeld, A, Kliegman, J.I.
Deposit date:2006-08-06
Release date:2006-11-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The conformations of the manganese transport regulator of Bacillus subtilis in its metal-free state.
J.Mol.Biol., 365, 2007

225946

數據於2024-10-09公開中

PDB statisticsPDBj update infoContact PDBjnumon