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4V40
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BU of 4v40 by Molmil
BETA-GALACTOSIDASE
Descriptor: BETA-GALACTOSIDASE, MAGNESIUM ION
Authors:Jacobson, R.H, Zhang, X, Dubose, R.F, Matthews, B.W.
Deposit date:1994-07-18
Release date:2014-07-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Three-dimensional structure of beta-galactosidase from E. coli.
Nature, 369, 1994
6O2O
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BU of 6o2o by Molmil
CDTb Double Heptamer Short Form Modeled from Cryo-EM Map Reconstructed using C1 Symmetry
Descriptor: ADP-ribosyltransferase binding component
Authors:Lacy, D.B, Sheedlo, M.J, Anderson, D.M.
Deposit date:2019-02-24
Release date:2019-10-30
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.53 Å)
Cite:Structural insights into the transition of Clostridioides difficile binary toxin from prepore to pore.
Nat Microbiol, 5, 2020
3E3F
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BU of 3e3f by Molmil
H. influenzae beta-carbonic anhydrase, variant V47A with 100 mM bicarbonate
Descriptor: BICARBONATE ION, Carbonic anhydrase 2, ZINC ION
Authors:Rowlett, R.S, Mysliwiec, M.
Deposit date:2008-08-07
Release date:2009-08-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Evidence for a bicarbonate "escort" site in Haemophilus influenzae beta-carbonic anhydrase .
Biochemistry, 49, 2010
6NY5
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BU of 6ny5 by Molmil
Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA
Descriptor: MAGNESIUM ION, Pumilio domain-containing protein C56F2.08c, RNA (5'-R(P*UP*UP*AP*AP*UP*AP*AP*CP*UP*UP*AP*AP*U)-3'), ...
Authors:Qiu, C, Hall, T.M.T.
Deposit date:2019-02-11
Release date:2019-07-03
Last modified:2020-01-15
Method:X-RAY DIFFRACTION (3.002 Å)
Cite:Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity.
Nucleic Acids Res., 47, 2019
5K7H
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BU of 5k7h by Molmil
Crystal structure of AibR in complex with the effector molecule isovaleryl coenzyme A
Descriptor: CHLORIDE ION, Isovaleryl-coenzyme A, NICKEL (II) ION, ...
Authors:Bock, T, Volz, C, Mueller, R, Blankenfeldt, W.
Deposit date:2016-05-26
Release date:2016-12-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:The AibR-isovaleryl coenzyme A regulator and its DNA binding site - a model for the regulation of alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus.
Nucleic Acids Res., 45, 2017
8DO5
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BU of 8do5 by Molmil
Crystal structure of NahE in complex with intermediate (R)-4-hydroxy-4-(2-hydroxyphenyl)-2-iminobutanoate
Descriptor: (4R)-4-hydroxy-4-(2-hydroxyphenyl)butanoic acid, DIMETHYL SULFOXIDE, Trans-ohydrobenzylidenepyruvate hydratase aldolase
Authors:LeVieux, J.A, Hardtke, H.A, Zhang, Y.J.
Deposit date:2022-07-12
Release date:2022-12-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A mutagenic analysis of NahE, a hydratase-aldolase in the naphthalene degradative pathway.
Arch.Biochem.Biophys., 733, 2023
4WF7
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BU of 4wf7 by Molmil
Crystal structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in the intramolecular isomerization catalysis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, MAGNESIUM ION, ...
Authors:Wang, Y.L, Chow, S.Y, Lin, Y.T, Hsieh, Y.C, Lee, G.C, Liaw, S.H.
Deposit date:2014-09-13
Release date:2014-12-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in catalysis of the intramolecular isomerization.
Acta Crystallogr.,Sect.D, 70, 2014
8E2R
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BU of 8e2r by Molmil
Crystal structure of TadAC-1.14
Descriptor: GLYCEROL, ZINC ION, tRNA-specific adenosine deaminase 1.14
Authors:Feliciano, P.R, Lee, S.J, Ciaramella, G.
Deposit date:2022-08-15
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Improved cytosine base editors generated from TadA variants.
Nat.Biotechnol., 41, 2023
8E2P
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BU of 8e2p by Molmil
Crystal structure of TadA*8.20 in a complex with ssDNA
Descriptor: DNA (5'-D(P*GP*CP*TP*CP*GP*GP*CP*TP*(D8A)P*CP*GP*GP*A)-3'), ZINC ION, tRNA-specific adenosine deaminase 8.20
Authors:Feliciano, P.R, Lee, S.J, Ciaramella, G.
Deposit date:2022-08-15
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Improved cytosine base editors generated from TadA variants.
Nat.Biotechnol., 41, 2023
8DQV
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BU of 8dqv by Molmil
The 1.52 angstrom CryoEM structure of the [NiFe]-hydrogenase Huc from Mycobacterium smegmatis - catalytic dimer (Huc2S2L)
Descriptor: CARBONMONOXIDE-(DICYANO) IRON, FE3-S4 CLUSTER, Hydrogenase-2, ...
Authors:Grinter, R, Venugopal, H, Kropp, A, Greening, C.
Deposit date:2022-07-20
Release date:2023-01-04
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (1.52 Å)
Cite:Structural basis for bacterial energy extraction from atmospheric hydrogen.
Nature, 615, 2023
8E2S
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BU of 8e2s by Molmil
Crystal structure of TadAC-1.19
Descriptor: ZINC ION, tRNA-specific adenosine deaminase 1.19
Authors:Feliciano, P.R, Lee, S.J, Ciaramella, G.
Deposit date:2022-08-15
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Improved cytosine base editors generated from TadA variants.
Nat.Biotechnol., 41, 2023
8E2Q
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BU of 8e2q by Molmil
Crystal structure of TadAC-1.17 in a complex with ssDNA
Descriptor: DNA (5'-D(P*GP*CP*GP*GP*CP*TP*(D8A)P*CP*GP*GP*A)-3'), GLYCEROL, ZINC ION, ...
Authors:Feliciano, P.R, Lee, S.J, Ciaramella, G.
Deposit date:2022-08-15
Release date:2023-01-11
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.34 Å)
Cite:Improved cytosine base editors generated from TadA variants.
Nat.Biotechnol., 41, 2023
8E73
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BU of 8e73 by Molmil
Vigna radiata supercomplex I+III2 (full bridge)
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, CARDIOLIPIN, ...
Authors:Maldonado, M, Letts, J.A.
Deposit date:2022-08-23
Release date:2023-01-11
Last modified:2023-02-08
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Plant-specific features of respiratory supercomplex I + III 2 from Vigna radiata.
Nat.Plants, 9, 2023
6O65
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BU of 6o65 by Molmil
Crystal Structure of Arabidopsis thaliana Spermidine Synthase isoform 1 (AtSPDS1) in complex with decarboxylated S-adenosylmethionine and cyclohexylamine
Descriptor: 1,2-ETHANEDIOL, 5'-[(S)-(3-AMINOPROPYL)(METHYL)-LAMBDA~4~-SULFANYL]-5'-DEOXYADENOSINE, CYCLOHEXYLAMMONIUM ION, ...
Authors:Sekula, B, Dauter, Z.
Deposit date:2019-03-05
Release date:2019-06-05
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Spermidine Synthase (SPDS) Undergoes Concerted Structural Rearrangements Upon Ligand Binding - A Case Study of the Two SPDS Isoforms FromArabidopsis thaliana.
Front Plant Sci, 10, 2019
8DWT
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BU of 8dwt by Molmil
SPOP W22R Form 2
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B, Lo, Y.H.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (6.2 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
5KGN
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BU of 5kgn by Molmil
1.95A resolution structure of independent phosphoglycerate mutase from C. elegans in complex with a macrocyclic peptide inhibitor (2d)
Descriptor: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, CHLORIDE ION, GLYCEROL, ...
Authors:Lovell, S, Mehzabeen, N, Battaile, K.P, Yu, H, Dranchak, P, MacArthur, R, Li, Z, Carlow, T, Suga, H, Inglese, J.
Deposit date:2016-06-13
Release date:2017-04-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Macrocycle peptides delineate locked-open inhibition mechanism for microorganism phosphoglycerate mutases.
Nat Commun, 8, 2017
8DWV
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BU of 8dwv by Molmil
Full-length wild type SPOP
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B, Lo, Y.H.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
8DWS
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BU of 8dws by Molmil
Full-length E47K SPOP
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B, Lo, Y.H.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2023-03-22
Method:ELECTRON MICROSCOPY (3.73 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
8DWU
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BU of 8dwu by Molmil
SPOP W22R Form 1
Descriptor: Speckle-type POZ protein
Authors:Cuneo, M.J, Mittag, T, O'Flynn, B.
Deposit date:2022-08-02
Release date:2023-01-18
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Higher-order SPOP assembly reveals a basis for cancer mutant dysregulation.
Mol.Cell, 83, 2023
6OKU
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BU of 6oku by Molmil
CDTb Double Heptamer Long Form Mask 3 Modeled from Cryo-EM Map Reconstructed using C7 Symmetry
Descriptor: ADP-ribosyltransferase binding component
Authors:Lacy, D.B, Sheedlo, M.J, Anderson, D.M.
Deposit date:2019-04-15
Release date:2019-10-30
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural insights into the transition of Clostridioides difficile binary toxin from prepore to pore.
Nat Microbiol, 5, 2020
5JR7
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BU of 5jr7 by Molmil
Crystal structure of an ACRDYS heterodimer [RIa(92-365):C] of PKA
Descriptor: ADENOSINE-5'-DIPHOSPHATE, cAMP-dependent protein kinase catalytic subunit alpha, cAMP-dependent protein kinase type I-alpha regulatory subunit
Authors:Bruystens, J.G.H, Wu, J, Taylor, S.S.
Deposit date:2016-05-05
Release date:2017-03-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Structure of a PKA RI alpha Recurrent Acrodysostosis Mutant Explains Defective cAMP-Dependent Activation.
J. Mol. Biol., 428, 2016
5JXZ
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BU of 5jxz by Molmil
A low magnesium structure of the isochorismate synthase, EntC
Descriptor: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, Isochorismate synthase EntC, ...
Authors:Meneely, K.M, Sundlov, J.A, Gulick, A.M, Lamb, A.L.
Deposit date:2016-05-13
Release date:2016-07-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
5JZD
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BU of 5jzd by Molmil
A re-refinement of the isochorismate synthase EntC
Descriptor: (5S,6S)-5-[(1-carboxyethenyl)oxy]-6-hydroxycyclohexa-1,3-diene-1-carboxylic acid, Isochorismate synthase EntC, MAGNESIUM ION
Authors:Meneely, K.M, Lamb, A.L.
Deposit date:2016-05-16
Release date:2016-07-20
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:An Open and Shut Case: The Interaction of Magnesium with MST Enzymes.
J.Am.Chem.Soc., 138, 2016
1TD2
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BU of 1td2 by Molmil
Crystal Structure of the PdxY Protein from Escherichia coli
Descriptor: 3-HYDROXY-5-(HYDROXYMETHYL)-2-METHYLISONICOTINALDEHYDE, Pyridoxamine kinase, SULFATE ION
Authors:Safo, M.K, Musayev, F.N, Hunt, S, di Salvo, M, Scarsdale, N, Schirch, V.
Deposit date:2004-05-21
Release date:2004-07-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Crystal structure of the PdxY Protein from Escherichia coli
J.Bacteriol., 186, 2004
6ON5
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BU of 6on5 by Molmil
Crystal Structure of the Zn-bound Domain-Swapped Dimer Q108K:T51D:A28C:L36C:F57H Mutant of Human Cellular Retinol Binding Protein II
Descriptor: Retinol-binding protein 2, ZINC ION
Authors:Ghanbarpour, A, Geiger, J.
Deposit date:2019-04-20
Release date:2019-10-16
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.638 Å)
Cite:Engineering the hCRBPII Domain-Swapped Dimer into a New Class of Protein Switches.
J.Am.Chem.Soc., 141, 2019

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數據於2024-07-10公開中

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