PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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2KRF	NMR solution structure of the DNA binding domain of Competence protein A Descriptor: Transcriptional regulatory protein comA Authors: Hobbs, C.A, Bobay, B.G, Thompson, R.J, Perego, M, Cavanagh, J. Deposit date: 2009-12-16 Release date: 2010-04-07 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: NMR solution structure and DNA-binding model of the DNA-binding domain of competence protein A. J.Mol.Biol., 398, 2010
2FF0	Solution Structure of Steroidogenic Factor 1 DNA Binding Domain Bound to its Target Sequence in the Inhibin alpha-subunit Promoter Descriptor: CTGTGGCCCTGAGCC, GGCTCAGGGCCACAG, Steroidogenic factor 1, ... Authors: Little, T.H, Zhang, Y, Matulis, C.K, Weck, J, Zhang, Z, Ramachandran, A, Mayo, K.E, Radhakrishnan, I. Deposit date: 2005-12-17 Release date: 2006-04-11 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Sequence-specific deoxyribonucleic Acid (DNA) recognition by steroidogenic factor 1: a helix at the carboxy terminus of the DNA binding domain is necessary for complex stability. Mol.Endocrinol., 20, 2006
2FO1	Crystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNA Descriptor: 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3', 5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3', Lin-12 and glp-1 phenotype protein 1, ... Authors: Wilson, J.J, Kovall, R.A. Deposit date: 2006-01-12 Release date: 2006-03-21 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.12 Å) Cite: Crystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA. Cell(Cambridge,Mass.), 124, 2006
7SXL	Plasmodium falciparum apicoplast DNA polymerase (exo-minus) without affinity tag Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Nieto, N, Chheda, P, Kerns, R, Nelson, S, Honzatko, R. Deposit date: 2021-11-23 Release date: 2022-10-26 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Promising antimalarials targeting apicoplast DNA polymerase from Plasmodium falciparum. Eur.J.Med.Chem., 243, 2022
3M8R	Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP Descriptor: 4'-ethylthymidine 5'-(tetrahydrogen triphosphate), ACETATE ION, DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), ... Authors: Diederichs, K, Marx, A, Betz, K. Deposit date: 2010-03-19 Release date: 2010-07-07 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA polymerases caught processing size-augmented nucleotide probes. Angew.Chem.Int.Ed.Engl., 49, 2010
3M8S	Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP Descriptor: 4'-methylthymidine 5'-(tetrahydrogen triphosphate), ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Diederichs, K, Marx, A, Betz, K. Deposit date: 2010-03-19 Release date: 2010-07-07 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structures of DNA polymerases caught processing size-augmented nucleotide probes. Angew.Chem.Int.Ed.Engl., 49, 2010
6YEX	VcaM4I restriction endonuclease in the absence of DNA Descriptor: CHLORIDE ION, HNH endonuclease, SULFATE ION Authors: Pastor, M, Czapinska, H, Lutz, T, Helbrecht, I, Xu, S, Bochtler, M. Deposit date: 2020-03-25 Release date: 2020-12-16 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA. Nucleic Acids Res., 49, 2021
1JE8	Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site Descriptor: 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/Nitrite Response Regulator Protein NARL, SULFATE ION Authors: Maris, A.E, Sawaya, M.R, Kaczor-Grzeskowiak, M, Jarvis, M.R, Bearson, S.M.D, Kopka, M.L, Schroder, I, Gunsalus, R.P, Dickerson, R.E. Deposit date: 2001-06-15 Release date: 2002-09-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Dimerization allows DNA target site recognition by the NarL response regulator. Nat.Struct.Biol., 9, 2002
5LLQ	Crystal structure of Sulfolobus solfataricus O6-methylguanine methyltransferase C119F variant Descriptor: GLYCEROL, Methylated-DNA--protein-cysteine methyltransferase Authors: Miggiano, R, Rossi, F, Rizzi, M. Deposit date: 2016-07-28 Release date: 2016-11-09 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Interdomain interactions rearrangements control the reaction steps of a thermostable DNA alkyltransferase. Biochim.Biophys.Acta, 1861, 2016
6UEU	Crystal structure of BF DNA polymerase F710Y mutant bound to tetrahydrofuran and dATP Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*(3DR)P*AP*CP*GP*TP*GP*AP*TP*CP*G)-3'), ... Authors: Wu, E.Y, Beese, L.S. Deposit date: 2019-09-23 Release date: 2020-09-30 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural basis for blockage of DNA synthesis by a thymine dimer lesion in a high-fidelity DNA polymerase To Be Published
2AYB	Crystal structure of HPV6a E2 DNA Binding Domain bound to a 16 base pair DNA target Descriptor: 5'-D(*CP*AP*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*TP*TP*G)-3', Regulatory protein E2 Authors: Hooley, E, Brady, R.L, Gaston, K. Deposit date: 2005-09-07 Release date: 2006-08-22 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (3.2 Å) Cite: The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic Acids Res., 34, 2006
1D62	THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH Descriptor: 5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3' Authors: Lipanov, A, Kopka, M.L, Kaczor-Grzeskowiak, M, Dickerson, R.E. Deposit date: 1992-03-01 Release date: 1993-07-15 Last modified: 2023-07-26 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA. Biochemistry, 32, 1993
6MDX	Mechanism of protease dependent DPC repair Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, DNA (5'-D(P*CP*C)-3'), ... Authors: Li, F, Raczynska, J, Chen, Z, Yu, H. Deposit date: 2018-09-05 Release date: 2019-04-10 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural Insight into DNA-Dependent Activation of Human Metalloprotease Spartan. Cell Rep, 26, 2019
1ADR	DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE DNA-BINDING DOMAIN OF THE P22 C2 REPRESSOR (1-76) IN SOLUTION AND COMPARISON WITH THE DNA-BINDING DOMAIN OF THE 434 REPRESSOR Descriptor: P22 C2 REPRESSOR Authors: Sevillasierra, P, Otting, G, Wuthrich, K. Deposit date: 1993-07-19 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Determination of the nuclear magnetic resonance structure of the DNA-binding domain of the P22 c2 repressor (1 to 76) in solution and comparison with the DNA-binding domain of the 434 repressor. J.Mol.Biol., 235, 1994
6MXO	Structure of HPoleta incorporating dCTP opposite the 3-prime Pt(DACH)-GG Descriptor: (cyclohex-1-ene-1,2-diamine)platinum(2+), 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*CP*GP*GP*CP*TP*CP*AP*CP*AP*CP*T)-3'), ... Authors: Ouzon-Shubeita, H, Lee, S. Deposit date: 2018-10-31 Release date: 2019-02-13 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.04 Å) Cite: Structural basis for the bypass of the major oxaliplatin-DNA adducts by human DNA polymerase eta. Biochem. J., 476, 2019
1OZJ	Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution Descriptor: SMAD 3, Smad binding element, ZINC ION Authors: Chai, J, Wu, J.-W, Yan, N, Massague, J, Pavletich, N.P, Shi, Y. Deposit date: 2003-04-09 Release date: 2004-03-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Features of a Smad3 MH1-DNA complex. Roles of water and zinc in DNA binding. J.Biol.Chem., 278, 2003
4IRG	Uninhibited DNA-binding domain of the Ets transcription factor ERG Descriptor: Transcriptional regulator ERG Authors: Regan, M.C, Horanyi, P.S, Pryor, E.E, Sarver, J.L, Cafiso, D.S, Bushweller, J.H. Deposit date: 2013-01-14 Release date: 2013-07-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and dynamic studies of the transcription factor ERG reveal DNA binding is allosterically autoinhibited. Proc.Natl.Acad.Sci.USA, 110, 2013
7USF	Mouse mammary tumor virus strand transfer complex intasome Descriptor: CALCIUM ION, Integrase, ZINC ION, ... Authors: Jozwik, I, Lyumkis, D. Deposit date: 2022-04-25 Release date: 2022-08-24 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: B-to-A transition in target DNA during retroviral integration. Nucleic Acids Res., 50, 2022
2PMU	Crystal structure of the DNA-binding domain of PhoP Descriptor: CHLORIDE ION, GLYCINE, PHOSPHATE ION, ... Authors: Wang, S. Deposit date: 2007-04-23 Release date: 2008-02-26 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.779 Å) Cite: Structure of the DNA-binding domain of the response regulator PhoP from Mycobacterium tuberculosis Biochemistry, 46, 2007
4G83	Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element Descriptor: Tumor protein p73, ZINC ION, dna Authors: Ethayathulla, A.S, Viadiu, H. Deposit date: 2012-07-20 Release date: 2013-01-16 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (4 Å) Cite: Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element J.Biol.Chem., 2013
3ERE	Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator Descriptor: 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DAP*DAP*DCP*DGP*DAP*DTP*DGP*DCP*DAP*DA)-3', 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DCP*DGP*DTP*DTP*DAP*DTP*DGP*DCP*DAP*DA)-3', Arginine repressor, ... Authors: Cherney, L.T, Cherney, M.M, Garen, C.R, Lu, G.J, James, M.N, TB Structural Genomics Consortium (TBSGC) Deposit date: 2008-10-01 Release date: 2008-10-14 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structure of the arginine repressor protein in complex with the DNA operator from Mycobacterium tuberculosis. J.Mol.Biol., 384, 2008
2YPR	Crystal structure of the DNA binding ETS domain of human protein FEV Descriptor: GLYCEROL, PROTEIN FEV Authors: Allerston, C.K, Cooper, C, Vollmar, M, Krojer, T, von Delft, F, Weigelt, J, Arrowsmith, C.H, Bountra, C, Edwards, A, Gileadi, O. Deposit date: 2012-10-31 Release date: 2013-01-16 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Structures of the Ets Domains of Transcription Factors Etv1, Etv4, Etv5 and Fev: Determinants of DNA Binding and Redox Regulation by Disulfide Bond Formation. J.Biol.Chem., 290, 2015
1OWR	CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA Descriptor: NFAT1 Monomeric Binding Site, Minus Strand, Plus Strand, ... Authors: Stroud, J.C, Chen, L. Deposit date: 2003-03-29 Release date: 2004-02-10 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of NFAT Bound to DNA as a Monomer J.Mol.Biol., 334, 2003
2BNW	Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats Descriptor: 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3', ORF OMEGA Authors: Weihofen, W.A, Cicek, A, Pratto, F, Alonso, J.C, Saenger, W. Deposit date: 2005-04-05 Release date: 2006-03-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription. Nucleic Acids Res., 34, 2006
1LO1	ESTROGEN RELATED RECEPTOR 2 DNA BINDING DOMAIN IN COMPLEX WITH DNA Descriptor: 5'-D(*CP*GP*TP*GP*AP*CP*CP*TP*TP*GP*AP*GP*C)-3', 5'-D(*GP*CP*TP*CP*AP*AP*GP*GP*TP*CP*AP*CP*G)-3', Steroid hormone receptor ERR2, ... Authors: Gearhart, M.D, Holmbeck, S.M.A, Evans, R.M, Dyson, H.J, Wright, P.E. Deposit date: 2002-05-05 Release date: 2003-04-22 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Monomeric Complex of Human Orphan Estrogen Related Receptor-2 with DNA: A Pseudo-dimer Interface Mediates Extended Half-site Recognition J.Mol.Biol., 327, 2003

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