Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

8FSJ
DownloadVisualize
BU of 8fsj by Molmil
Cryo-EM structure of engineered hepatitis C virus E1E2 ectodomain in complex with antibodies AR4A, HEPC74, and IGH520
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, AR4A heavy chain, ...
Authors:Metcalf, M.C, Ofek, G.
Deposit date:2023-01-10
Release date:2023-07-19
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.65 Å)
Cite:Structure of engineered hepatitis C virus E1E2 ectodomain in complex with neutralizing antibodies.
Nat Commun, 14, 2023
8OIF
DownloadVisualize
BU of 8oif by Molmil
Structure of the UBE1L activating enzyme bound to ISG15 and UBE2L6
Descriptor: ADENOSINE MONOPHOSPHATE, Ubiquitin-like modifier-activating enzyme 7, Ubiquitin-like protein ISG15, ...
Authors:Wallace, I, Kheewoong, B, Prabu, J.R, Vollrath, R, von Gronau, S, Schulman, B.A, Swatek, K.N.
Deposit date:2023-03-22
Release date:2023-12-13
Last modified:2024-11-13
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Insights into the ISG15 transfer cascade by the UBE1L activating enzyme.
Nat Commun, 14, 2023
8G4C
DownloadVisualize
BU of 8g4c by Molmil
BceABS ATPgS high res TM
Descriptor: Bacitracin export ATP-binding protein BceA, Bacitracin export permease protein BceB, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
Authors:George, N.L, Orlando, B.J.
Deposit date:2023-02-09
Release date:2023-06-21
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Architecture of a complete Bce-type antimicrobial peptide resistance module.
Nat Commun, 14, 2023
4BW9
DownloadVisualize
BU of 4bw9 by Molmil
PylRS Y306G, Y384F, I405R mutant in complex with AMP-PNP
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, PENTAETHYLENE GLYCOL, ...
Authors:Schneider, S, Vrabel, M, Gattner, M.J, Fluegel, V, Lopez-Carillo, V, Carell, T.
Deposit date:2013-07-01
Release date:2013-07-31
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structural Insights Into Incorporation of Norbornene Amino Acids for Click Modification of Proteins
Chem.Bio.Chem., 14, 2013
8E3S
DownloadVisualize
BU of 8e3s by Molmil
CryoEM structure of yeast Arginyltransferase 1 (ATE1)
Descriptor: Arginyl-tRNA--protein transferase 1, ZINC ION
Authors:Huang, W, Zhang, Y, Taylor, D.J.
Deposit date:2022-08-17
Release date:2023-04-26
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:The structural basis of tRNA recognition by arginyl-tRNA-protein transferase.
Nat Commun, 14, 2023
8OH7
DownloadVisualize
BU of 8oh7 by Molmil
Structure of A4M4C bound to (KR)4 Solution backbone structure refined by PCS
Descriptor: Designed Armadillo repeat protein with four internal modules
Authors:Cucuzza, S, Zerbe, O.
Deposit date:2023-03-20
Release date:2023-12-13
Method:SOLUTION NMR
Cite:Unexpected dynamics in femtomolar complexes of binding proteins with peptides.
Nat Commun, 14, 2023
8G1A
DownloadVisualize
BU of 8g1a by Molmil
Cryo-EM structure of Nav1.7 with CBD
Descriptor: (3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ...
Authors:Fan, X, Huang, J, Yan, N.
Deposit date:2023-02-01
Release date:2023-07-05
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Cannabidiol inhibits Na v channels through two distinct binding sites.
Nat Commun, 14, 2023
8G3F
DownloadVisualize
BU of 8g3f by Molmil
BceAB-S nucleotide free BceS state 1
Descriptor: Bacitracin export ATP-binding protein BceA, Bacitracin export permease protein BceB, OLEIC ACID, ...
Authors:George, N.L, Orlando, B.J.
Deposit date:2023-02-07
Release date:2023-06-21
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Architecture of a complete Bce-type antimicrobial peptide resistance module.
Nat Commun, 14, 2023
8FZY
DownloadVisualize
BU of 8fzy by Molmil
Bacteroides spp. Ntox15 domain type VI secretion system effector Tde1
Descriptor: 1,2-ETHANEDIOL, Ntox15 domain-containing protein, SULFATE ION
Authors:Bosch, D.E, Mougous, J.D.
Deposit date:2023-01-30
Release date:2023-07-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales.
Mbio, 14, 2023
2J44
DownloadVisualize
BU of 2j44 by Molmil
Alpha-glucan binding by a streptococcal virulence factor
Descriptor: ALKALINE AMYLOPULLULANASE, ZINC ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Lammerts van Bueren, A, Higgins, M, Wang, D, Burke, R.D, Boraston, A.B.
Deposit date:2006-08-24
Release date:2006-12-11
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Identification and Structural Basis of Binding to Host Lung Glycogen by Streptococcal Virulence Factors.
Nat.Struct.Mol.Biol., 14, 2007
8KAD
DownloadVisualize
BU of 8kad by Molmil
Crystal structure of an antibody light chain tetramer with 3D domain swapping
Descriptor: Antibody light chain
Authors:Sakai, T, Mashima, T, Kobayashi, N, Ogata, H, Uda, T, Hifumi, E, Hirota, S.
Deposit date:2023-08-02
Release date:2023-12-27
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and thermodynamic insights into antibody light chain tetramer formation through 3D domain swapping.
Nat Commun, 14, 2023
8G0K
DownloadVisualize
BU of 8g0k by Molmil
Bacteroides multispecies type VI secretion system Ntox15 domain effector and immunity Tde1/Tdi1
Descriptor: DUF1851 domain-containing protein, Ntox15 domain-containing protein
Authors:Bosch, D.E, Mougous, J.D.
Deposit date:2023-01-31
Release date:2023-07-05
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural disruption of Ntox15 nuclease effector domains by immunity proteins protects against type VI secretion system intoxication in Bacteroidales.
Mbio, 14, 2023
4BR3
DownloadVisualize
BU of 4br3 by Molmil
Determination of potential scaffolds for human choline kinase alpha 1 by chemical deconvolution studies
Descriptor: 1-((4'-((6-amino-3H-purin-3-yl)methyl)biphenyl-4-yl)methyl)-4-(dimethylamino)pyridinium, 3-benzyladenine, CHOLINE KINASE ALPHA, ...
Authors:Sahun-Roncero, M, Rubio-Ruiz, B, Conejo-Garcia, A, Velazquez-Campoy, A, Entrena, A, Hurtado-Guerrero, R.
Deposit date:2013-06-03
Release date:2013-06-19
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Determination of Potential Scaffolds for Human Choline Kinase Alpha 1 by Chemical Deconvolution Studies
Chembiochem, 14, 2013
8GI4
DownloadVisualize
BU of 8gi4 by Molmil
Crystal structure of human LIMK2 PDZ domain
Descriptor: LIM domain kinase 2
Authors:Casanova Sepulveda, G, Boggon, T.J.
Deposit date:2023-03-13
Release date:2023-12-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Autoregulation of the LIM kinases by their PDZ domain.
Nat Commun, 14, 2023
8GW6
DownloadVisualize
BU of 8gw6 by Molmil
AtSLAC1 6D mutant in closed state
Descriptor: CHLORIDE ION, CHOLESTEROL HEMISUCCINATE, Guard cell S-type anion channel SLAC1,Green fluorescent protein (Fragment)
Authors:Lee, Y, Lee, S.
Deposit date:2022-09-16
Release date:2023-11-15
Last modified:2023-11-29
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Cryo-EM structures of the plant anion channel SLAC1 from Arabidopsis thaliana suggest a combined activation model.
Nat Commun, 14, 2023
8GJ4
DownloadVisualize
BU of 8gj4 by Molmil
A1 Tei: Adenylation domain 1 core construct from teicoplanin biosynthesis
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, MbtH-like short polypeptide, ...
Authors:Hansen, M.H, Cryle, M.J.
Deposit date:2023-03-14
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides.
Nat Commun, 14, 2023
8GLC
DownloadVisualize
BU of 8glc by Molmil
A1 AncAla: Adenylation domain 1 core construct from ancestral reconstruction of glycopeptide antibiotic biosynthesis, alanine selection pocket
Descriptor: MbtH-like short polypeptide, Non-ribosomal peptide synthetase
Authors:Hansen, M.H, Cryle, M.J.
Deposit date:2023-03-21
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (3.12 Å)
Cite:Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides.
Nat Commun, 14, 2023
8GIC
DownloadVisualize
BU of 8gic by Molmil
A1 Tei + Hpg: Adenylation domain 1 core construct from teicoplanin biosynthesis; 4-hydroxyphenylglycine bound
Descriptor: (2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, MbtH-like short polypeptide, ...
Authors:Hansen, M.H, Cryle, M.J.
Deposit date:2023-03-14
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides.
Nat Commun, 14, 2023
8GJP
DownloadVisualize
BU of 8gjp by Molmil
A1 Int graft: Adenylation domain 1 core construct from teicoplanin biosynthesis, intermediate selection pocket graft
Descriptor: MbtH-like short polypeptide, Non-ribosomal peptide synthetase
Authors:Hansen, M.H, Cryle, M.J.
Deposit date:2023-03-16
Release date:2023-12-06
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Resurrecting ancestral antibiotics: unveiling the origins of modern lipid II targeting glycopeptides.
Nat Commun, 14, 2023
8E4V
DownloadVisualize
BU of 8e4v by Molmil
Solution structure of the WH domain of MORF
Descriptor: Isoform 3 of Histone acetyltransferase KAT6B
Authors:Zhang, Y, Kutateladze, T.G.
Deposit date:2022-08-19
Release date:2023-05-10
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:MORF and MOZ acetyltransferases target unmethylated CpG islands through the winged helix domain.
Nat Commun, 14, 2023
8E7Q
DownloadVisualize
BU of 8e7q by Molmil
Crystal Structure of FosB from Bacillus cereus with Zinc and 2-Phosphonopropionic acid
Descriptor: (2S)-2-phosphonopropanoic acid, FORMIC ACID, MAGNESIUM ION, ...
Authors:Travis, S, Tsodikov, O.V, Garneau-Tsodikova, S, Thompson, M.K.
Deposit date:2022-08-24
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus.
Rsc Med Chem, 14, 2023
8DWJ
DownloadVisualize
BU of 8dwj by Molmil
Primase of mutant bacteriophage T4 primosome with single strand DNA/RNA primer hybrid in primer exiting state
Descriptor: DNA (70-MER), DNA primase, RNA(5'-ppp-GCCGA-3'), ...
Authors:Feng, X, Li, H.
Deposit date:2022-08-01
Release date:2023-06-14
Last modified:2023-08-23
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.
Nat Commun, 14, 2023
8E7R
DownloadVisualize
BU of 8e7r by Molmil
Crystal Structure of FosB from Bacillus cereus with Zinc and Phosphonoacetate
Descriptor: FORMIC ACID, MAGNESIUM ION, Metallothiol transferase FosB, ...
Authors:Travis, S, Tsodikov, O.V, Garneau-Tsodikova, S, Thompson, M.K.
Deposit date:2022-08-24
Release date:2023-06-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.975 Å)
Cite:Identification and analysis of small molecule inhibitors of FosB from Staphylococcus aureus.
Rsc Med Chem, 14, 2023
8E8R
DownloadVisualize
BU of 8e8r by Molmil
9H2 Fab-Sabin poliovirus 3 complex
Descriptor: 9H2 Fab heavy chain, 9H2 Fab light chain, Capsid protein VP1, ...
Authors:Charnesky, A.J.
Deposit date:2022-08-25
Release date:2023-06-21
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:A human monoclonal antibody binds within the poliovirus receptor-binding site to neutralize all three serotypes.
Nat Commun, 14, 2023
8KI1
DownloadVisualize
BU of 8ki1 by Molmil
Crystal structure of the holo form of the hemophore HasA from Pseudomonas protegens Pf-5
Descriptor: GLYCEROL, Heme acquisition protein HasAp, PHOSPHATE ION, ...
Authors:Shisaka, Y, Inaba, H, Sugimoto, H, Shoji, O.
Deposit date:2023-08-22
Release date:2024-03-27
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Heme-substituted protein assembly bridged by synthetic porphyrin: achieving controlled configuration while maintaining rotational freedom.
Rsc Adv, 14, 2024

229564

數據於2025-01-01公開中

PDB statisticsPDBj update infoContact PDBjnumon