PDB: 222415 resultsInfo pagesStatus searchChemie searchBIRD

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5VEG	Structure of a Short-Chain Flavodoxin Associated with a Non-Canonical PDU Bacterial Microcompartment Descriptor: CADMIUM ION, FLAVIN MONONUCLEOTIDE, Flavodoxin, ... Authors: Sutter, M, Plegaria, J.S, Kerfeld, C.A. Deposit date: 2017-04-04 Release date: 2017-10-11 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Structural and Functional Characterization of a Short-Chain Flavodoxin Associated with a Noncanonical 1,2-Propanediol Utilization Bacterial Microcompartment. Biochemistry, 56, 2017
5VZ1	Crystal structure of the Apo Antibody fragment (Fab) raised against C-terminal domain of Ebola nucleoprotein (EBOV, TAFV, BDBV strains) Descriptor: Apo Antibody Fab Heavy Chain, Apo Antibody Fab Light Chain, ZINC ION Authors: Radwanska, M.J, Derewenda, U, Kossiakoff, A, Derewenda, Z.S. Deposit date: 2017-05-26 Release date: 2018-06-27 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.112 Å) Cite: Crystal structure of the Apo Antibody fragment (Fab) raised against C-terminal domain of Ebola nucleoprotein (EBOV, TAFV, BDBV strains) To Be Published
5VEW	Structure of the human GLP-1 receptor complex with PF-06372222 Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Glucagon-like peptide 1 receptor,Endolysin chimera, N-{4-[(R)-(3,3-dimethylcyclobutyl)({6-[4-(trifluoromethyl)-1H-imidazol-1-yl]pyridin-3-yl}amino)methyl]benzene-1-carbonyl}-beta-alanine, ... Authors: Song, G, Yang, D, Wang, Y, Graaf, C.D, Zhou, Q, Jiang, S, Liu, K, Cai, X, Dai, A, Lin, G, Liu, D, Wu, F, Wu, Y, Zhao, S, Ye, L, Han, G.W, Lau, J, Wu, B, Hanson, M.A, Liu, Z.-J, Wang, M.-W, Stevens, R.C. Deposit date: 2017-04-05 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Human GLP-1 receptor transmembrane domain structure in complex with allosteric modulators. Nature, 546, 2017
4V7D	Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Brilot, A.F, Korostelev, A.A, Ermolenko, D.N, Grigorieff, N. Deposit date: 2013-11-21 Release date: 2014-07-09 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (7.6 Å) Cite: Structure of the ribosome with elongation factor G trapped in the pretranslocation state. Proc.Natl.Acad.Sci.USA, 110, 2013
5VZC	Post-catalytic complex of human Polymerase Mu (G433S) mutant with incoming dTTP Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*CP*GP*GP*CP*AP*TP*AP*CP*G)-3'), ... Authors: Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C. Deposit date: 2017-05-27 Release date: 2017-07-05 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.552 Å) Cite: Structural accommodation of ribonucleotide incorporation by the DNA repair enzyme polymerase Mu. Nucleic Acids Res., 45, 2017
4V96	The structure of a 1.8 MDa viral genome injection device suggests alternative infection mechanisms Descriptor: BPP, ORF46, ORF48 Authors: Veesler, D, Spinelli, S, Mahony, J, Lichiere, J, Blangy, S, Bricogne, G, Legrand, P, Ortiz-Lombardia, M, Campanacci, V, van Sinderen, D, Cambillau, C. Deposit date: 2012-02-01 Release date: 2014-07-09 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.8 Å) Cite: Structure of the phage TP901-1 1.8 MDa baseplate suggests an alternative host adhesion mechanism. Proc.Natl.Acad.Sci.USA, 109, 2012
4W4S	Crystal structure of ent-kaurene synthase BJKS from bradyrhizobium japonicum in complex with BPH-629 Descriptor: Uncharacterized protein blr2150, [2-(3-DIBENZOFURAN-4-YL-PHENYL)-1-HYDROXY-1-PHOSPHONO-ETHYL]-PHOSPHONIC ACID Authors: Liu, W, Zheng, Y, Huang, C.H, Guo, R.T. Deposit date: 2014-08-15 Release date: 2015-01-14 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum. Sci Rep, 4, 2014
7LII	Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S7D Descriptor: Maritimacin, RIBOFLAVIN Authors: Andreas, M.P, Adamson, L, Tasneem, N, Close, W, Giessen, T, Lau, Y.H. Deposit date: 2021-01-27 Release date: 2022-02-09 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.55 Å) Cite: Pore structure controls stability and molecular flux in engineered protein cages. Sci Adv, 8, 2022
4FN2	Crystal structure of a SMT fusion Peptidyl-prolyl cis-trans isomerase with surface mutation D44G from Burkholderia pseudomallei complexed with CJ37 Descriptor: Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase, ethyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-06-19 Release date: 2012-08-01 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: A structural biology approach enables the development of antimicrobials targeting bacterial immunophilins. Antimicrob.Agents Chemother., 58, 2014
7LIL	Thermotoga maritima Encapsulin Nanocompartment Pore Mutant SE3 Descriptor: Maritimacin, RIBOFLAVIN Authors: Andreas, M.P, Adamson, L, Tasneem, N, Close, W, Giessen, T, Lau, Y.H. Deposit date: 2021-01-27 Release date: 2022-02-09 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: Pore structure controls stability and molecular flux in engineered protein cages. Sci Adv, 8, 2022
5VI6	Crystal structure of histone deacetylase 8 in complex with trapoxin A Descriptor: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, Histone deacetylase 8, ... Authors: Porter, N.J, Christianson, D.W. Deposit date: 2017-04-14 Release date: 2017-09-06 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.237 Å) Cite: Binding of the Microbial Cyclic Tetrapeptide Trapoxin A to the Class I Histone Deacetylase HDAC8. ACS Chem. Biol., 12, 2017
7LIM	Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S6E Descriptor: Maritimacin, RIBOFLAVIN Authors: Andreas, M.P, Adamson, L, Tasneem, N, Close, W, Giessen, T, Lau, Y.H. Deposit date: 2021-01-27 Release date: 2022-02-09 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.75 Å) Cite: Pore structure controls stability and molecular flux in engineered protein cages. Sci Adv, 8, 2022
4W5J	New structural conformations of adenylate kinase from Streptococcus pneumoniae D39 with Ap5A Descriptor: Adenylate kinase, BIS(ADENOSINE)-5'-PENTAPHOSPHATE, MAGNESIUM ION Authors: Thach, T.T, Lee, S.H. Deposit date: 2014-08-18 Release date: 2014-11-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.65 Å) Cite: New crystal structures of adenylate kinase from Streptococcus pneumoniae D39 in two conformations. Acta Crystallogr.,Sect.F, 70, 2014
3HAK	Human prion protein variant V129 Descriptor: Major prion protein Authors: Lee, S, Antony, L, Hartmann, R, Knaus, K.J, Surewicz, K, Surewicz, W.K, Yee, V.C. Deposit date: 2009-05-01 Release date: 2010-01-12 Last modified: 2017-11-01 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Conformational diversity in prion protein variants influences intermolecular beta-sheet formation. Embo J., 29, 2010
4W6D	Crystal Structure of Full-Length Split GFP Mutant K26C Disulfide Dimer, P 32 2 1 Space Group, Form 1 Descriptor: MAGNESIUM ION, fluorescent protein K26C Authors: Leibly, D.J, Waldo, G.S, Yeates, T.O. Deposit date: 2014-08-20 Release date: 2015-02-18 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (3.45 Å) Cite: A Suite of Engineered GFP Molecules for Oligomeric Scaffolding. Structure, 23, 2015
7LIJ	Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S1K Descriptor: Maritimacin, RIBOFLAVIN Authors: Andreas, M.P, Adamson, L, Tasneem, N, Close, W, Giessen, T, Lau, Y.H. Deposit date: 2021-01-27 Release date: 2022-02-09 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: Pore structure controls stability and molecular flux in engineered protein cages. Sci Adv, 8, 2022
5VF5	Crystal structure of the vicilin from Solanum melongena, re-refinement Descriptor: ACETATE ION, COPPER (II) ION, DI(HYDROXYETHYL)ETHER, ... Authors: Porebski, P.J, Wlodawer, A, Dauter, Z, Minor, W, Stanfield, R, Jaskolski, M, Pozharski, E, Weichenberger, C.X, Rupp, B. Deposit date: 2017-04-06 Release date: 2017-12-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Detect, correct, retract: How to manage incorrect structural models. FEBS J., 285, 2018
7LIK	Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S1R Descriptor: Maritimacin, RIBOFLAVIN Authors: Andreas, M.P, Adamson, L, Tasneem, N, Close, W, Giessen, T, Lau, Y.H. Deposit date: 2021-01-27 Release date: 2022-02-09 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Pore structure controls stability and molecular flux in engineered protein cages. Sci Adv, 8, 2022
7LIS	Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S5D Descriptor: Maritimacin, RIBOFLAVIN Authors: Andreas, M.P, Adamson, L, Tasneem, N, Close, W, Giessen, T, Lau, Y.H. Deposit date: 2021-01-27 Release date: 2022-02-09 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Pore structure controls stability and molecular flux in engineered protein cages. Sci Adv, 8, 2022
4WC0	tRNA-processing enzyme with ATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Poly A polymerase Authors: Yamashita, S, Tomita, K. Deposit date: 2014-09-04 Release date: 2015-04-15 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Measurement of Acceptor-T Psi C Helix Length of tRNA for Terminal A76-Addition by A-Adding Enzyme. Structure, 23, 2015
4WCE	The crystal structure of the large ribosomal subunit of Staphylococcus aureus Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 23S rRNA, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ... Authors: Eyal, Z, Matzov, D, Krupkin, M, Wekselman, I, Zimmerman, E, Rozenberg, H, Bashan, A, Yonath, A. Deposit date: 2014-09-04 Release date: 2015-10-21 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.526 Å) Cite: Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus. Proc.Natl.Acad.Sci.USA, 112, 2015
5VIG	Crystal structure of anti-Zika antibody Z006 bound to Zika virus envelope protein DIII Descriptor: CITRATE ANION, Fab heavy chain, Fab light chain, ... Authors: Keeffe, J.R, West Jr, A.P, Gristick, H.B, Bjorkman, P.J. Deposit date: 2017-04-16 Release date: 2017-05-03 Last modified: 2017-05-17 Method: X-RAY DIFFRACTION (3 Å) Cite: Recurrent Potent Human Neutralizing Antibodies to Zika Virus in Brazil and Mexico. Cell, 169, 2017
3HCJ	Structure of MsrB from Xanthomonas campestris (oxidized form) Descriptor: Peptide methionine sulfoxide reductase, ZINC ION Authors: Ranaivoson, F.M, Kauffmann, B, Favier, F. Deposit date: 2009-05-06 Release date: 2009-10-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Methionine Sulfoxide Reductase B Displays a High Level of Flexibility. J.Mol.Biol., 2009
4UT0	THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MN (STATE 7) Descriptor: 5'-D(*CP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*CP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*AP*CP)-3', 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3', ... Authors: Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G. Deposit date: 2014-07-17 Release date: 2014-12-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol., 22, 2015
2GF9	Crystal structure of human RAB3D in complex with GDP Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Ras-related protein Rab-3D, ... Authors: Hong, B, Wang, J, Shen, L, Tempel, W, Landry, R, Arrowsmith, C.H, Edwards, A.M, Sundstrom, M, Weigelt, J, Bochkarev, A, Park, H, Structural Genomics Consortium (SGC) Deposit date: 2006-03-21 Release date: 2006-05-02 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Crystal structure of human RAB3D in complex with GDP To be Published

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