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1UW0
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BU of 1uw0 by Molmil
Solution structure of the zinc-finger domain from DNA ligase IIIa
Descriptor: DNA LIGASE III, ZINC ION
Authors:Kulczyk, A.W, Yang, J.-C, Neuhaus, D.
Deposit date:2004-01-27
Release date:2004-08-05
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Solution Structure and DNA Binding of the Zinc-Finger Domain from DNA Ligase Iiialpha
J.Mol.Biol., 341, 2004
2ZAS
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BU of 2zas by Molmil
Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with 4-alpha-cumylphenol, a bisphenol A derivative
Descriptor: 4-(1-methyl-1-phenylethyl)phenol, Estrogen-related receptor gamma, GLYCEROL
Authors:Matsushima, A, Kakuta, Y, Teramoto, T, Shimohigashi, Y.
Deposit date:2007-10-09
Release date:2008-10-07
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner
Biochem.Biophys.Res.Commun., 373, 2008
4V1Z
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BU of 4v1z by Molmil
The 3-D structure of the cellobiohydrolase, Cel7A, from Aspergillus fumigatus
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CELLOBIOHYDROLASE, ZINC ION
Authors:Moroz, O.V, Maranta, M, Shaghasi, T, Harris, P.V, Wilson, K.S, Davies, G.J.
Deposit date:2014-10-04
Release date:2015-01-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:The Three-Dimensional Structure of the Cellobiohydrolase Cel7A from Aspergillus Fumigatus at 1.5 A Resolution
Acta Crystallogr.,Sect.F, 71, 2015
4XM8
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BU of 4xm8 by Molmil
Anthrax toxin lethal factor with ligand-induced binding pocket
Descriptor: Lethal factor, N-hydroxy-N~2~-{[3-(methoxymethyl)phenyl]sulfonyl}-N~2~-(2-methylpropyl)-D-valinamide, ZINC ION
Authors:Maize, K.M, Finzel, B.C.
Deposit date:2015-01-14
Release date:2015-11-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Ligand-induced expansion of the S1' site in the anthrax toxin lethal factor.
Febs Lett., 589, 2015
2QVY
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BU of 2qvy by Molmil
4-Chlorobenzoyl-CoA Ligase/Synthetase, I303G mutation, bound to 3,4-Dichlorobenzoate
Descriptor: 3,4-dichlorobenzoate, 4-Chlorobenzoate CoA Ligase
Authors:Wu, R, Reger, A.S, Cao, J, Gulick, A.M, Dunaway-Mariano, D.
Deposit date:2007-08-09
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range.
Biochemistry, 46, 2007
4XM7
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BU of 4xm7 by Molmil
Anthrax toxin lethal factor with ligand-induced binding pocket
Descriptor: 1,2-ETHANEDIOL, Lethal factor, N~2~-[(4-fluoro-3-methoxyphenyl)sulfonyl]-N-hydroxy-N~2~-(2-methylpropyl)-D-valinamide, ...
Authors:Maize, K.M, Finzel, B.C.
Deposit date:2015-01-14
Release date:2015-11-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Ligand-induced expansion of the S1' site in the anthrax toxin lethal factor.
Febs Lett., 589, 2015
3V7S
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BU of 3v7s by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor 0364
Descriptor: 5-methyl-3-[4-(4-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}-1H-1,2,3-triazol-1-yl)butyl]-1,3-benzoxazol-2(3H)-one, Biotin ligase
Authors:Yap, M.Y, Pendini, N.R.
Deposit date:2011-12-21
Release date:2012-04-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
2QHO
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BU of 2qho by Molmil
Crystal structure of the UBA domain from EDD ubiquitin ligase in complex with ubiquitin
Descriptor: E3 ubiquitin-protein ligase EDD1, Ubiquitin
Authors:Kozlov, G, Gehring, K.
Deposit date:2007-07-02
Release date:2007-09-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural basis of ubiquitin recognition by the ubiquitin-associated (UBA) domain of the ubiquitin ligase EDD.
J.Biol.Chem., 282, 2007
3V8K
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BU of 3v8k by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with biotin
Descriptor: BIOTIN, Biotin ligase
Authors:Yap, M.Y, Pendini, N.R.
Deposit date:2011-12-23
Release date:2012-12-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.23 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
2INX
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BU of 2inx by Molmil
Crystal Structure of Ketosteroid Isomerase D40N from Pseudomonas putida (pKSI) with bound 2,6-difluorophenol
Descriptor: 2,6-DIFLUOROPHENOL, Steroid delta-isomerase
Authors:Martinez Caaveiro, J.M, Pybus, B, Ringe, D, Petsko, G.A, Sigala, P, Kraut, D, Herschlag, D.
Deposit date:2006-10-09
Release date:2007-10-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Testing geometrical discrimination within an enzyme active site: constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole.
J.Am.Chem.Soc., 130, 2008
5WZZ
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BU of 5wzz by Molmil
The SIAH E3 ubiquitin ligases promote Wnt/ beta-catenin signaling through mediating Wnt-induced Axin degradation
Descriptor: Axin-1, E3 ubiquitin-protein ligase SIAH1, ZINC ION
Authors:Ji, L, Jiang, B, Jiang, X, Charlat, O, Chen, A, Mickanin, C, Bauer, A, Xu, W, Yan, X.-X, Cong, F.
Deposit date:2017-01-19
Release date:2017-08-16
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.103 Å)
Cite:The SIAH E3 ubiquitin ligases promote Wnt/ beta-catenin signaling through mediating Wnt-induced Axin degradation
Genes Dev., 31, 2017
3V7R
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BU of 3v7r by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with inhibitor
Descriptor: (3aS,4S,6aR)-4-(5-{1-[4-(6-amino-9H-purin-9-yl)butyl]-1H-1,2,3-triazol-4-yl}pentyl)tetrahydro-1H-thieno[3,4-d]imidazol-2(3H)-one, Biotin ligase
Authors:Yap, M.Y, Pendini, N.R.
Deposit date:2011-12-21
Release date:2012-12-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.61 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
3V8L
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BU of 3v8l by Molmil
Crystal structure of Staphylococcus aureus biotin protein ligase in complex with biotinyl-5'-AMP
Descriptor: BIOTINYL-5-AMP, Biotin ligase
Authors:Yap, M.Y.
Deposit date:2011-12-23
Release date:2012-12-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Selective inhibition of biotin protein ligase from Staphylococcus aureus.
J.Biol.Chem., 287, 2012
1FVI
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BU of 1fvi by Molmil
CRYSTAL STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE
Descriptor: ADENOSINE MONOPHOSPHATE, CHLORELLA VIRUS DNA LIGASE-ADENYLATE, SULFATE ION
Authors:Odell, M, Sriskanda, V, Shuman, S, Nikolov, D.B.
Deposit date:2000-09-20
Release date:2000-11-22
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of eukaryotic DNA ligase-adenylate illuminates the mechanism of nick sensing and strand joining.
Mol.Cell, 6, 2000
2QVX
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BU of 2qvx by Molmil
4-Chlorobenzoyl-CoA Ligase/Synthetase, I303G mutation, bound to 3-Chlorobenzoate
Descriptor: 3-chlorobenzoate, 4-Chlorobenzoate CoA Ligase
Authors:Wu, R, Reger, A.S, Cao, J, Gulick, A.M, Dunaway-Mariano, D.
Deposit date:2007-08-09
Release date:2007-12-18
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range.
Biochemistry, 46, 2007
2QVZ
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BU of 2qvz by Molmil
4-Chlorobenzoyl-CoA Ligase/Synthetase, I303A mutation, bound to 3-Chlorobenzoate
Descriptor: 3-chlorobenzoate, 4-Chlorobenzoate CoA Ligase/Synthetase
Authors:Wu, R, Reger, A.S, Cao, J, Gulick, A.M, Dunaway-Mariano, D.
Deposit date:2007-08-09
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range.
Biochemistry, 46, 2007
2QW0
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BU of 2qw0 by Molmil
4-Chlorobenzoyl-CoA Ligase/Synthetase, I303A mutation, bound to 3,4 Dichlorobenzoate
Descriptor: 3,4-dichlorobenzoate, 4-Chlorobenzoate CoA Ligase
Authors:Wu, R, Reger, A.S, Cao, J, Gulick, A.M, Dunaway-Mariano, D.
Deposit date:2007-08-09
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Rational redesign of the 4-chlorobenzoate binding site of 4-chlorobenzoate: coenzyme a ligase for expanded substrate range.
Biochemistry, 46, 2007
4ZQI
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BU of 4zqi by Molmil
Crystal structure of Apo D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Descriptor: D-alanine--D-alanine ligase, SODIUM ION
Authors:Tran, H.-T, Kang, L.-W, Hong, M.-K, Ngo, H.P.T, Huynh, K.H, Ahn, Y.J.
Deposit date:2015-05-10
Release date:2016-01-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop.
Acta Crystallogr D Struct Biol, 72, 2016
7M4O
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BU of 7m4o by Molmil
Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4M
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BU of 7m4m by Molmil
Crystal structure of RBR E3 ligase RNF216 with ubiquitin
Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
7M4N
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BU of 7m4n by Molmil
Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin
Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ...
Authors:Cotton, T.R, Lechtenberg, B.C.
Deposit date:2021-03-21
Release date:2022-01-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216.
Mol.Cell, 82, 2022
5C1O
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BU of 5c1o by Molmil
Crystal structure of AMP-PNP complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Descriptor: D-alanine--D-alanine ligase, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ...
Authors:Tran, H.T, Kang, L.W, Hong, M.K.
Deposit date:2015-06-15
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop.
Acta Crystallogr D Struct Biol, 72, 2016
7DBS
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BU of 7dbs by Molmil
Crystal Structure Of Biotin Protein Ligase From Leishmania Major in complex with Biotin
Descriptor: BIOTIN, Biotin/lipoate protein ligase-like protein
Authors:Rajak, M, Sundd, M.
Deposit date:2020-10-21
Release date:2021-04-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Leishmania major biotin protein ligase forms a unique cross-handshake dimer.
Acta Crystallogr D Struct Biol, 77, 2021
3ATP
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BU of 3atp by Molmil
Structure of the ligand binding domain of the bacterial serine chemoreceptor Tsr with ligand
Descriptor: Methyl-accepting chemotaxis protein I, SERINE
Authors:Tajima, H, Sakuma, M, Homma, K, Kawagishi, I, Imada, K.
Deposit date:2011-01-07
Release date:2011-10-19
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Ligand specificity determined by differentially arranged common ligand-binding residues in bacterial amino acid chemoreceptors Tsr and Tar.
J.Biol.Chem., 286, 2011
5C1P
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BU of 5c1p by Molmil
Crystal structure of ADP and D-alanyl-D-alanine complexed D-alanine-D-alanine ligase(DDL) from Yersinia pestis
Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, D-ALANINE, ...
Authors:Tran, H.T, Kang, L.W, Hong, M.K, Ngo, H.P.T.
Deposit date:2015-06-15
Release date:2016-03-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of D-alanine-D-alanine ligase from Yersinia pestis: nucleotide phosphate recognition by the serine loop.
Acta Crystallogr D Struct Biol, 72, 2016

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数据于2025-07-09公开中

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