PDB: 348 件ウェブページステータス検索Chemie searchBIRD

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7ARA	Rhinovirus A2 2A protease in complex with zVAM.fmk 分子名称: (phenylmethyl) ~{N}-[(2~{R})-3-methyl-1-[[(2~{S})-1-[[(3~{S})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate, (phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{R})-1-[[(3~{R})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate, 2A protease, ... 著者 Deutschmann-Olek, K.M, Skern, T, Bezerra, G.A, Yue, W.W. 登録日 2020-10-23 公開日 2021-07-28 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.243 Å) 主引用文献 Defining substrate selection by rhinoviral 2A proteinase through its crystal structure with the inhibitor zVAM.fmk. Virology, 562, 2021
5LZ1	Crystal structure of human ACBD3 GOLD domain 分子名称: Golgi resident protein GCP60 著者 Klima, M, Boura, E. 登録日 2016-09-29 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Kobuviral Non-structural 3A Proteins Act as Molecular Harnesses to Hijack the Host ACBD3 Protein. Structure, 25, 2017
5LZ3	Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of Aichivirus A 分子名称: 3A, Golgi resident protein GCP60 著者 Klima, M, Boura, E. 登録日 2016-09-29 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Kobuviral Non-structural 3A Proteins Act as Molecular Harnesses to Hijack the Host ACBD3 Protein. Structure, 25, 2017
5LZ6	Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of Aichivirus B 分子名称: 3A, Golgi resident protein GCP60, beta-D-glucopyranose 著者 Klima, M, Boura, E. 登録日 2016-09-29 公開日 2016-12-14 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Kobuviral Non-structural 3A Proteins Act as Molecular Harnesses to Hijack the Host ACBD3 Protein. Structure, 25, 2017
1TP7	Crystal Structure of the RNA-dependent RNA Polymerase from Human Rhinovirus 16 分子名称: 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE, Genome polyprotein, SULFATE ION 著者 Appleby, T.C, Luecke, H, Shim, J.H, Wu, J.Z, Cheney, I.W, Zhong, W, Vogeley, L, Hong, Z, Yao, N. 登録日 2004-06-15 公開日 2005-06-21 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structure of complete rhinovirus RNA polymerase suggests front loading of protein primer. J.Virol., 79, 2005
4GMP	Crystal structure of enterovirus 71 strain 1095 procapsid 分子名称: capsid protein VP0, capsid protein VP1, capsid protein VP3 著者 Yoder, J.D, Hafenstein, S. 登録日 2012-08-16 公開日 2013-05-15 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Structures of the procapsid and mature virion of enterovirus 71 strain 1095. J.Virol., 87, 2013
4Y3C	I304V 3D polymerase mutant of EMCV 分子名称: 3D polymerase, CHLORIDE ION, GLYCEROL 著者 Verdaguer, N, Ferrer-Orta, C, Vives-Adrian, L. 登録日 2015-02-10 公開日 2015-04-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family. Plos Pathog., 11, 2015
4Y2C	M300V 3D polymerase mutant of EMCV 分子名称: GLYCEROL, Genome polyprotein 著者 Verdaguer, N, Ferrer-Orta, C, Vives-Adrian, L. 登録日 2015-02-09 公開日 2015-04-01 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The RNA Template Channel of the RNA-Dependent RNA Polymerase as a Target for Development of Antiviral Therapy of Multiple Genera within a Virus Family. Plos Pathog., 11, 2015
1Z7Z	Cryo-em structure of human coxsackievirus A21 complexed with five domain icam-1kilifi 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Intercellular adhesion molecule-1, human coxsackievirus A21 著者 Xiao, C, Bator-Kelly, C.M, Rieder, E, Chipman, P.R, Craig, A, Kuhn, R.J, Wimmer, E, Rossmann, M.G. 登録日 2005-03-28 公開日 2005-08-02 最終更新日 2021-10-20 実験手法 ELECTRON MICROSCOPY (8 Å) 主引用文献 The crystal structure of coxsackievirus a21 and its interaction with icam-1. Structure, 13, 2005
7XT3	Crystal Structure of Hepatitis virus A 2C protein 128-335 aa 分子名称: Genome polyprotein, PHOSPHATE ION 著者 Chen, P, Wojdyla, J.A, Li, Z, Wang, M, Cui, S. 登録日 2022-05-16 公開日 2022-07-27 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Biochemical and structural characterization of hepatitis A virus 2C reveals an unusual ribonuclease activity on single-stranded RNA. Nucleic Acids Res., 50, 2022
6L70	Complex structure of PEDV 3CLpro with GC376 分子名称: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid, PEDV main protease 著者 Ye, G, Peng, G.Q. 登録日 2019-10-30 公開日 2020-04-29 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 Structural Basis for Inhibiting Porcine Epidemic Diarrhea Virus Replication with the 3C-Like Protease Inhibitor GC376. Viruses, 12, 2020
4C10	Cryo-EM reconstruction of empty enterovirus 71 in complex with a neutralizing antibody E19 分子名称: CHLORIDE ION, EV19 5 C1-6 F1 C11, SODIUM ION, ... 著者 Plevka, P, Perera, R, Cardosa, J, Suksatu, A, Kuhn, R.J, Rossmann, M.G. 登録日 2013-08-08 公開日 2014-02-05 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (13 Å) 主引用文献 Neutralizing Antibodies Can Initiate Genome Release from Human Enterovirus 71. Proc.Natl.Acad.Sci.USA, 111, 2014
4C0U	Cryo-EM reconstruction of enterovirus 71 in complex with a neutralizing antibody E18 分子名称: FAB EV18 4 D6-1 F1 G9, VP1, VP2, ... 著者 Plevka, P, Perera, R, Cardosa, J, Suksatu, A, Kuhn, R.J, Rossmann, M.G. 登録日 2013-08-08 公開日 2014-02-05 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Neutralizing Antibodies Can Initiate Genome Release from Human Enterovirus 71. Proc.Natl.Acad.Sci.USA, 111, 2014
2ZU1	crystal structure of CVB3 3C protease mutant C147A 分子名称: 3C proteinase 著者 Lee, C.C, Tsui, Y.C, Wang, A.H.-J. 登録日 2008-10-12 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
2ZU5	complex structure of SARS-CoV 3CL protease with TG-0205486 分子名称: 3C-like proteinase, N-[(benzyloxy)carbonyl]-O-tert-butyl-L-threonyl-N-[(1R)-4-cyclopropyl-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}butyl]-L-leucinamide 著者 Hsu, M.F, Lee, C.C, Wang, A.H.-J. 登録日 2008-10-12 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.65 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
1NY7	COWPEA MOSAIC VIRUS (CPMV) 分子名称: COWPEA MOSAIC VIRUS, LARGE (L) SUBUNIT, SMALL (S) SUBUNIT 著者 Lin, T, Chen, Z, Usha, R, Stauffacher, C.V, Dai, J.-B, Schmidt, T, Johnson, J.E. 登録日 2003-02-11 公開日 2003-03-18 最終更新日 2017-10-11 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 The Refined Crystal Structure of Cowpea Mosaic Virus at 2.8A Resolution Virology, 265, 1999
2ZU2	complex structure of CoV 229E 3CL protease with EPDTC 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 3C-like proteinase, zinc(II)hydrogensulfide 著者 Lee, C.C, Wang, A.H.-J. 登録日 2008-10-12 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
2ZTY	crystal structure of 3C protease from CVB3 in space group C2 分子名称: 3C proteinase 著者 Lee, C.C, Wang, A.H.-J. 登録日 2008-10-10 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
2ZTX	Complex structure of CVB3 3C protease with EPDTC 分子名称: 3C proteinase, zinc(II)hydrogensulfide 著者 Lee, C.C, Wang, A.H.-J. 登録日 2008-10-10 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
2ZU4	Complex structure of SARS-CoV 3CL protease with TG-0204998 分子名称: 3C-like proteinase, N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl)amino]-L-alanyl-N-[(1R)-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}pentyl]-L-leucinamide 著者 Hsu, M.F, Lee, C.C, Wang, A.H.-J. 登録日 2008-10-12 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
2ZU3	Complex structure of CVB3 3C protease with TG-0204998 分子名称: 3C proteinase, N-[(benzyloxy)carbonyl]-3-[(2,2-dimethylpropanoyl)amino]-L-alanyl-N-[(1R)-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}pentyl]-L-leucinamide 著者 Lee, C.C, Tsui, Y.C, Wang, A.H.-J. 登録日 2008-10-12 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
2ZTZ	crystal structure of 3C protease from CVB3 in space group P21 分子名称: 3C proteinase 著者 Lee, C.C, Wang, A.H.-J. 登録日 2008-10-11 公開日 2009-01-13 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural Basis of Inhibition Specificities of 3C and 3C-like Proteases by Zinc-coordinating and Peptidomimetic Compounds J.Biol.Chem., 284, 2009
4C0Y	Cryo-EM reconstruction of empty enterovirus 71 in complex with a neutralizing antibody E18 分子名称: FAB EV18 4 D6-1 F1 G9, VP1, VP2, ... 著者 Plevka, P, Perera, R, Cardosa, J, Suksatu, A, Kuhn, R.J, Rossmann, M.G. 登録日 2013-08-08 公開日 2014-02-05 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (16 Å) 主引用文献 Neutralizing Antibodies Can Initiate Genome Release from Human Enterovirus 71. Proc.Natl.Acad.Sci.USA, 111, 2014
2R72	Crystal structure of infectious bursal disease virus VP1 polymerase, incubated with Mg2+ ion. 分子名称: INFECTIOUS BURSAL DISEASE VIRUS VP1 POLYMERASE, MAGNESIUM ION 著者 Garriga, D, Navarro, A, Querol-Audi, J, Abaitua, F, Rodriguez, J.F, Verdaguer, N. 登録日 2007-09-07 公開日 2007-11-27 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3.15 Å) 主引用文献 Activation mechanism of a noncanonical RNA-dependent RNA polymerase. Proc.Natl.Acad.Sci.Usa, 104, 2007
6ES8	HIV capsid hexamer with IP6 ligand 分子名称: Gag protein, INOSITOL HEXAKISPHOSPHATE 著者 James, L.C. 登録日 2017-10-19 公開日 2018-08-15 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis. Elife, 7, 2018

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