PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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7N8N	Melbournevirus nucleosome like particle 分子名称: DNA (147-MER), Histone H2B-H2A doublet, Histone H4-H3 doublet 著者 Liu, Y, Toner, C.M, Zhou, K, Bowerman, S, Luger, K. 登録日 2021-06-15 公開日 2021-08-04 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.89 Å) 主引用文献 Virus-encoded histone doublets are essential and form nucleosome-like structures. Cell, 184, 2021
3LX2	Crystal Structure analysis of PCNA from Thermococcus kodakaraensis tk0582 分子名称: DNA polymerase sliding clamp 2, SULFATE ION 著者 Ladner, J.E, Kelman, Z, Pan, M. 登録日 2010-02-24 公開日 2011-01-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. Proc.Natl.Acad.Sci.USA, 108, 2011
3LX1	Crystal Structure analysis of PCNA1 from Thermococcus kodakaraensis tk0535 分子名称: DNA polymerase sliding clamp 1, SULFATE ION 著者 Ladner, J.E, Kelman, Z, Pan, M. 登録日 2010-02-24 公開日 2011-01-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structures of two active proliferating cell nuclear antigens (PCNAs) encoded by Thermococcus kodakaraensis. Proc.Natl.Acad.Sci.USA, 108, 2011
8U14	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 2) 分子名称: DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-30 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8TXX	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 3) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-24 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
8TXV	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 1) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-24 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
6ZFF	Pyrococcus furiosus Rad50 coiled coils in rod configuration 分子名称: DNA double-strand break repair Rad50 ATPase, ZINC ION 著者 Soh, Y.M, Basquin, J, Gruber, S. 登録日 2020-06-17 公開日 2020-07-08 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 A rod conformation of the Pyrococcus furiosus Rad50 coiled coil. Proteins, 89, 2021
8D7Z	Cereblon-DDB1 bound to CC-92480 and Ikaros ZF1-2-3 分子名称: DNA damage-binding protein 1, DNA-binding protein Ikaros, Mezigdomide, ... 著者 Watson, E.R, Lander, G.C. 登録日 2022-06-07 公開日 2022-07-20 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Molecular glue CELMoD compounds are regulators of cereblon conformation. Science, 378, 2022
8TXW	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A K15 in complex with RNF168 (Class 2) 分子名称: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-24 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
4GJP	Crystal structure of the TAL effector dHax3 bound to dsDNA containing repetitive methyl-CpG 分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*(5CM)P*GP*TP*CP*TP*CP*T)-3'), Hax3, ... 著者 Yan, N, Deng, D, Yan, C.Y, Yin, P, Pan, X.J, Shi, Y.G. 登録日 2012-08-10 公開日 2012-10-03 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.94 Å) 主引用文献 Crystal structure of a protein complex To be Published
5WV7	Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4A resolution 分子名称: DNA (5'-D(*CP*CP*GP*GP*GP*GP*TP*AP*CP*CP*CP*CP*GP*G)-3') 著者 Karthik, S, Thirugnanasambandam, A, Mandal, P.K, Gautham, N. 登録日 2016-12-22 公開日 2017-05-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.406 Å) 主引用文献 Crystal structure of d(CCGGGGTACCCCGG)2 at 1.4 angstrom resolution. Acta Crystallogr F Struct Biol Commun, 73, 2017
1BN9	RESPONSE ELEMENT OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB BETA 分子名称: DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*CP*AP*TP*TP*CP*TP*A)-3'), DNA (5'-D(*TP*AP*GP*AP*AP*TP*GP*TP*AP*GP*GP*TP*CP*AP*G)-3') 著者 Castagne, C, Terenzi, H, Zakin, M.M, Delepierre, M. 登録日 1998-07-31 公開日 1998-08-05 最終更新日 2023-12-27 実験手法 SOLUTION NMR 主引用文献 Solution structure of the orphan nuclear receptor rev-erb beta response element by 1H, 31P NMR and molecular simulation Biochimie, 82, 2000
4JNE	Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP 分子名称: ADENOSINE-5'-TRIPHOSPHATE, GLYCEROL, Hsp70 CHAPERONE DnaK, ... 著者 Qi, R, Sarbeng, E.B, Liu, Q, Le, K.Q, Xu, X, Xu, H, Yang, J, Wong, J.L, Vorvis, C, Hendrickson, W.A, Zhou, L, Liu, Q. 登録日 2013-03-15 公開日 2013-05-29 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP. Nat.Struct.Mol.Biol., 20, 2013
4Z53	Quinolone(Trovafloxacin)-DNA cleavage complex of topoisomerase IV from S. pneumoniae 分子名称: DNA topoisomerase 4 subunit B,DNA topoisomerase 4 subunit A, E-site DNA, MAGNESIUM ION, ... 著者 Laponogov, I, Veselkov, D.A, Pan, X.-S, Selvarajah, J, Crevel, I.M.-T, Fisher, L.M, Sanderson, M.R. 登録日 2015-04-02 公開日 2016-09-14 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.26 Å) 主引用文献 Structural studies of the drug-stabilized cleavage complexes of topoisomerase IV and gyrase from Streptococcus pneumoniae To Be Published
6S3P	Crystal structure of helicase Pif1 from Thermus oshimai in complex with (dT)18 分子名称: DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*T)-3'), PIF1 helicase 著者 Dai, Y.X, Chen, W.F, Teng, F.Y, Liu, N.N, Hou, X.M, Dou, S.X, Rety, S, Xi, X.G. 登録日 2019-06-25 公開日 2021-01-13 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.926 Å) 主引用文献 Structural and functional studies of SF1B Pif1 from Thermus oshimai reveal dimerization-induced helicase inhibition. Nucleic Acids Res., 49, 2021
1B95	ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), RESTRICTION ENDONUCLEASE ECORV 著者 Thomas, M.P, Halford, S.E, Brady, R.L. 登録日 1999-02-19 公開日 1999-02-26 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.05 Å) 主引用文献 Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group. Nucleic Acids Res., 27, 1999
7XPX	Cryo-EM structure of the histone methyltransferase SET8 bound to H4K20Ecx-nucleosome 分子名称: DNA (145-MER), Histone H2A, Histone H2B 1.1, ... 著者 Shi, L.X, Zhou, Z. 登録日 2022-05-06 公開日 2022-06-01 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Structural basis of nucleosomal H4K20 methylation by methyltransferase SET8. Faseb J., 36, 2022
8VY3	Human DNA polymerase alpha/primase - AavLEA1 (1:40 molar ratio) 分子名称: DNA polymerase alpha catalytic subunit, DNA polymerase alpha subunit B, DNA primase large subunit, ... 著者 Abe, K.M, Li, G, Grant, T, Lim, C.J. 登録日 2024-02-06 公開日 2024-09-04 実験手法 ELECTRON MICROSCOPY (2.98 Å) 主引用文献 Human PRC2 - AavLEA1 (1:40 molar ratio) To Be Published
8U13	Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in complex with RNF168-UbcH5c (class 1) 分子名称: DNA (146-MER), DNA (147-MER), E3 ubiquitin-protein ligase RNF168, ... 著者 Hu, Q, Botuyan, M.V, Zhao, D, Cui, G, Mer, G. 登録日 2023-08-30 公開日 2024-01-17 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 Mechanisms of RNF168 nucleosome recognition and ubiquitylation. Mol.Cell, 84, 2024
1B97	ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), RESTRICTION ENDONUCLEASE ECORV 著者 Thomas, M.P, Halford, S.E, Brady, R.L. 登録日 1999-02-19 公開日 1999-02-26 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group. Nucleic Acids Res., 27, 1999
192D	RECOMBINATION-LIKE STRUCTURE OF D(CCGCGG) 分子名称: DNA (5'-D(*CP*CP*GP*CP*GP*G)-3'), SODIUM ION 著者 Malinina, L, Urpi, L, Salas, X, Huynh-Dinh, T, Subirana, J.A. 登録日 1994-09-22 公開日 1995-02-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.92 Å) 主引用文献 Recombination-like structure of d(CCGCGG). J.Mol.Biol., 243, 1994
6BZ1	MEF2 Chimera D83V mutant/DNA complex 分子名称: DNA (5'-D(P*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3'), DNA (5'-D(P*TP*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)-3'), MEF2 CHIMERA 著者 Lei, X, Chen, L. 登録日 2017-12-21 公開日 2018-02-07 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.97 Å) 主引用文献 The Cancer Mutation D83V Induces an alpha-Helix to beta-Strand Conformation Switch in MEF2B. J. Mol. Biol., 430, 2018
7X3V	Cryo-EM structure of IOC3-N2 nucleosome 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Lifei, L, Kangjing, C, Chen, Z. 登録日 2022-03-01 公開日 2023-09-20 最終更新日 2024-02-28 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 Structure of the ISW1a complex bound to the dinucleosome. Nat.Struct.Mol.Biol., 31, 2024
1B96	ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3'), RESTRICTION ENDONUCLEASE ECORV 著者 Thomas, M.P, Halford, S.E, Brady, R.L. 登録日 1999-02-19 公開日 1999-02-26 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Structural analysis of a mutational hot-spot in the EcoRV restriction endonuclease: a catalytic role for a main chain carbonyl group. Nucleic Acids Res., 27, 1999
1CR4	CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE 4 PROTEIN OF BACTERIOPHAGE T7: COMPLEX WITH DTDP 分子名称: DNA PRIMASE/HELICASE, SULFATE ION, THYMIDINE-5'-DIPHOSPHATE 著者 Sawaya, M.R, Guo, S, Tabor, S, Richardson, C.C, Ellenberger, T. 登録日 1999-08-12 公開日 1999-11-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7. Cell(Cambridge,Mass.), 99, 1999

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