PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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6D0M	Polymerase Eta post-insertion binary complex with cytarabine (AraC) 分子名称: DNA (5'-D(*CP*AP*TP*GP*AP*CP*AP*GP*TP*GP*CP*T)-3'), DNA polymerase eta, DNA/RNA (5'-D(*AP*GP*CP*AP*CP*TP*GP*T)-R(P*(CAR))-3'), ... 著者 Rechkoblit, O, Aggarwal, A.K. 登録日 2018-04-10 公開日 2018-09-05 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (1.832 Å) 主引用文献 Structural basis for polymerase eta-promoted resistance to the anticancer nucleoside analog cytarabine. Sci Rep, 8, 2018
7CRO	NSD2 bearing E1099K/T1150A dual mutation in complex with 187-bp NCP 分子名称: DNA (168-MER), Histone H2A, Histone H2B, ... 著者 Li, W, Tian, W, Yuan, G, Deng, P, Gozani, O, Patel, D, Wang, Z. 登録日 2020-08-14 公開日 2020-10-21 最終更新日 2021-03-03 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Molecular basis of nucleosomal H3K36 methylation by NSD methyltransferases. Nature, 590, 2021
3NNN	BeF3 Activated DrrD Receiver Domain 分子名称: BERYLLIUM TRIFLUORIDE ION, DNA BINDING RESPONSE REGULATOR D, MAGNESIUM ION 著者 Robinson, V.L, Stock, A.M. 登録日 2010-06-23 公開日 2010-08-11 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Regulation of response regulator autophosphorylation through interdomain contacts. J.Biol.Chem., 285, 2010
349D	X-RAY CRYSTAL STRUCTURES OF THE DECAMER DGACCGCGGTC: HIGH SALT CONCENTRATION 分子名称: DNA (5'-D(*GP*AP*CP*CP*GP*CP*GP*GP*TP*C)-3') 著者 Luo, M, Finley, J.B. 登録日 1997-08-29 公開日 1997-10-09 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 X-ray crystal structures of half the human papilloma virus E2 binding site: d(GACCGCGGTC). Nucleic Acids Res., 26, 1998
5ZXM	Crystal Structure of GyraseB N-terminal at 1.93A Resolution 分子名称: ADENOSINE-5'-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, DNA gyrase subunit B, ... 著者 Tiwari, P, Gupta, D, Sachdeva, E, Sharma, S, Singh, T.P, Ethayathulla, A.S, Kaur, P. 登録日 2018-05-21 公開日 2019-05-22 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.938 Å) 主引用文献 Structural insights into the transient closed conformation and pH dependent ATPase activity of S.Typhi GyraseB N- terminal domain. Arch.Biochem.Biophys., 701, 2021
5LQG	A two-quartet G-quadruplex formed by human telomere in KCl solution at neutral pH 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3') 著者 Galer, P, Wang, B, Sket, P, Plavec, J. 登録日 2016-08-17 公開日 2018-06-13 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere. Angew.Chem.Int.Ed.Engl., 55, 2016
7NL0	Cryo-EM structure of the Lin28B nucleosome core particle 分子名称: DNA (131-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Roberts, G.A, Ozkan, B, Gachulincova, I, O Dwyer, M.R, Hall-Ponsele, E, Saxena, M, Robinson, P.J, Soufi, A. 登録日 2021-02-19 公開日 2021-08-11 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Dissecting OCT4 defines the role of nucleosome binding in pluripotency. Nat.Cell Biol., 23, 2021
6OM3	Crystal structure of the Orc1 BAH domain in complex with a nucleosome core particle 分子名称: DNA (146-MER), DNA (147-MER), Histone H2A, ... 著者 De Ioannes, P.E, Wang, M, Armache, K.-J. 登録日 2019-04-18 公開日 2019-07-10 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structure and function of the Orc1 BAH-nucleosome complex. Nat Commun, 10, 2019
5MVB	Solution structure of a human G-Quadruplex hybrid-2 form in complex with a Gold-ligand. 分子名称: DNA (26-MER), POTASSIUM ION, bis(m2-Oxo)-bis(2-methyl-2,2'-bipyridine)-di-gold(iii) 著者 Wirmer-Bartoschek, J, Jonker, H.R.A, Bendel, L.E, Gruen, T, Bazzicalupi, C, Messori, L, Gratteri, P, Schwalbe, H. 登録日 2017-01-16 公開日 2017-05-31 最終更新日 2024-06-19 実験手法 SOLUTION NMR 主引用文献 Solution NMR Structure of a Ligand/Hybrid-2-G-Quadruplex Complex Reveals Rearrangements that Affect Ligand Binding. Angew. Chem. Int. Ed. Engl., 56, 2017
7K61	Cryo-EM structure of 197bp nucleosome aided by scFv 分子名称: DNA (197-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ... 著者 Zhou, B.-R, Bai, Y. 登録日 2020-09-17 公開日 2020-11-25 最終更新日 2021-01-20 実験手法 ELECTRON MICROSCOPY (2.85 Å) 主引用文献 Distinct Structures and Dynamics of Chromatosomes with Different Human Linker Histone Isoforms. Mol.Cell, 81, 2021
8OF4	Nucleosome Bound human SIRT6 (Composite) 分子名称: DNA (145-MER), Histone H2A type 1, Histone H2B, ... 著者 Smirnova, E, Bignon, E, Schultz, P, Papai, G, Ben-Shem, A. 登録日 2023-03-13 公開日 2023-08-09 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (2.94 Å) 主引用文献 Binding to nucleosome poises human SIRT6 for histone H3 deacetylation. Elife, 12, 2024
5LQH	A two-quartet G-quadruplex formed by human telomere in KCl solution at pH 5.0 分子名称: DNA (5'-D(*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*G)-3') 著者 Galer, P, Wang, B, Sket, P, Plavec, J. 登録日 2016-08-17 公開日 2018-01-17 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Reversible pH Switch of Two-Quartet G-Quadruplexes Formed by Human Telomere. Angew.Chem.Int.Ed.Engl., 55, 2016
1F6V	SOLUTION STRUCTURE OF THE C TERMINAL OF MU B TRANSPOSITION PROTEIN 分子名称: DNA TRANSPOSITION PROTEIN 著者 Hung, L.-H, Chaconas, G, Shaw, G.S. 登録日 2000-06-23 公開日 2000-11-08 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 The solution structure of the C-terminal domain of the Mu B transposition protein. EMBO J., 19, 2000
1RYQ	Putative DNA-directed RNA polymerase, subunit e'' from Pyrococcus Furiosus Pfu-263306-001 分子名称: DNA-directed RNA polymerase, subunit e'', ZINC ION 著者 Liu, Z.-J, Chen, L, Tempel, W, Shah, A, Arendall III, W.B, Rose, J.P, Brereton, P.S, Izumi, M, Jenney Jr, F.E, Lee, H.S, Poole II, F.L, Shah, C, Sugar, F.J, Adams, M.W.W, Richardson, D.C, Richardson, J.S, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG) 登録日 2003-12-22 公開日 2004-08-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Parameter-space screening: a powerful tool for high-throughput crystal structure determination. Acta Crystallogr.,Sect.D, 61, 2005
5D4B	Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*C)-3'), DNA (5'-D(*TP*TP*TP*TP*TP*GP*G)-3'), MAGNESIUM ION, ... 著者 Loc'h, J, Rosario, S, Delarue, M. 登録日 2015-08-07 公開日 2016-07-27 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.66 Å) 主引用文献 Structural Basis for a New Templated Activity by Terminal Deoxynucleotidyl Transferase: Implications for V(D)J Recombination. Structure, 24, 2016
133D	THE CRYSTAL STRUCTURE OF N4-METHYLCYTOSINE.GUANOSIN BASE-PAIRS IN THE SYNTHETIC HEXANUCLEOTIDE D(CGCGM(4)CG) 分子名称: DNA (5'-D(*CP*GP*CP*GP*(C34)P*G)-3') 著者 Cervi, A.R, Guy, A, Leonard, G.A, Teoule, R, Hunter, W.N. 登録日 1993-07-29 公開日 1994-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 The crystal structure of N4-methylcytosine.guanosine base-pairs in the synthetic hexanucleotide d(CGCGm4CG). Nucleic Acids Res., 21, 1993
5Y27	Crystal structure of Se-Met Dpb4-Dpb3 分子名称: DNA polymerase epsilon subunit D, GLYCEROL, Putative transcription factor C16C4.22 著者 Li, Y, Gao, F, Su, M, Zhang, F.B, Chen, Y.H. 登録日 2017-07-24 公開日 2018-01-24 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5Y26	Crystal structure of native Dpb4-Dpb3 分子名称: DNA polymerase epsilon subunit D, GLYCEROL, Putative transcription factor C16C4.22 著者 Chen, Y.H, Li, Y, Gao, F. 登録日 2017-07-24 公開日 2018-01-24 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.003 Å) 主引用文献 Coordinated regulation of heterochromatin inheritance by Dpb3-Dpb4 complex. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
4LOX	Crystal structure of the I-SmaMI LAGLIDADG homing endonuclease bound to cleaved DNA 分子名称: DNA (5'-D(*CP*GP*TP*AP*CP*AP*CP*CP*TP*GP*AP*TP*AP*A)-3'), DNA (5'-D(*GP*GP*TP*AP*TP*CP*CP*TP*CP*CP*AP*TP*TP*AP*T)-3'), DNA (5'-D(P*CP*AP*GP*GP*TP*GP*TP*AP*CP*G)-3'), ... 著者 Chik, J, Shen, B, Stoddard, B. 登録日 2013-07-14 公開日 2014-09-24 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.98 Å) 主引用文献 Crystal structure of a LAGLIDADG endonuclease from the Sordaria Macrospore. To be Published
4XNO	Crystal structure of 5'-CTTATPPPZZZATAAG 分子名称: DNA (5'-D(*CP*TP*(BRU)P*AP*TP*(1WA)P*(1WA)P*(1WA)P*(1W5)P*(1W5)P*(1W5)P*AP*TP*AP*AP*G)-3') 著者 Georgiadis, M.M, Singh, I. 登録日 2015-01-15 公開日 2015-05-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.985 Å) 主引用文献 Structural basis for a six nucleotide genetic alphabet. J. Am. Chem. Soc., 137, 2015
8J1J	Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA 分子名称: DNA (38-MER), MAGNESIUM ION, RNA (118-MER), ... 著者 Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O. 登録日 2023-04-13 公開日 2023-09-27 実験手法 ELECTRON MICROSCOPY (2.91 Å) 主引用文献 Minimal and most efficient genome editing Cas enzyme To Be Published
351D	X-RAY CRYSTAL STRUCTURES OF THE HEXAMER DCACGCG: CRYSTALS GROWN IN THE PRESENCE OF RUTHENIUM (II) HEXAMMINE CHLORIDE 分子名称: DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') 著者 Karthe, P, Gautham, N. 登録日 1997-08-30 公開日 1997-09-30 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.64 Å) 主引用文献 Structure of d(CACGCG).d(CGCGTG) in crystals grown in the presence of ruthenium III hexammine chloride. Acta Crystallogr.,Sect.D, 54, 1998
168D	STABILIZING EFFECTS OF THE RNA 2'-SUBSTITUENT: CRYSTAL STRUCTURE OF AN OLIGODEOXYNUCLEOTIDE DUPLEX CONTAINING 2'-O-METHYLATED ADENOSINES 分子名称: DNA/RNA (5'-D(*GP*CP*GP*TP*)-R(*(A2M)P*)-D(*TP*AP*CP*GP*C)-3') 著者 Lubini, P, Zuercher, W, Egli, M. 登録日 1994-04-08 公開日 1994-08-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Stabilizing effects of the RNA 2'-substituent: crystal structure of an oligodeoxynucleotide duplex containing 2'-O-methylated adenosines. Chem.Biol., 1, 1994
3MVD	Crystal structure of the chromatin factor RCC1 in complex with the nucleosome core particle 分子名称: DNA (146-MER), Histone H2A, Histone H2B 1.1, ... 著者 Makde, R.D, England, J.R, Yennawar, H.P, Tan, S. 登録日 2010-05-04 公開日 2010-08-25 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Structure of RCC1 chromatin factor bound to the nucleosome core particle. Nature, 467, 2010
6QLD	Structure of inner kinetochore CCAN-Cenp-A complex 分子名称: DNA (125-MER), Histone H2A.1, Histone H2B.1, ... 著者 Yan, K, Yang, J, Zhang, Z, McLaughlin, S.H, Chang, L, Fasci, D, Heck, A.J.R, Barford, D. 登録日 2019-01-31 公開日 2019-10-02 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (4.15 Å) 主引用文献 Structure of the inner kinetochore CCAN complex assembled onto a centromeric nucleosome. Nature, 574, 2019

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