Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3IXS
DownloadVisualize
BU of 3ixs by Molmil
Ring1B C-terminal domain/RYBP C-terminal domain Complex
分子名称: 1,2-ETHANEDIOL, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, E3 ubiquitin-protein ligase RING2, ...
著者Wang, R, Taylor, A.B, Kim, C.A.
登録日2009-09-04
公開日2010-08-25
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Polycomb Group Targeting through Different Binding Partners of RING1B C-Terminal Domain.
Structure, 18, 2010
4DDI
DownloadVisualize
BU of 4ddi by Molmil
Crystal structure of human OTUB1/UbcH5b~Ub/Ub
分子名称: Polyubiquitin-C, Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1
著者Juang, Y.C, Sanches, M, Sicheri, F.
登録日2012-01-18
公開日2012-02-22
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (3.802 Å)
主引用文献OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function.
Mol.Cell, 45, 2012
4DDG
DownloadVisualize
BU of 4ddg by Molmil
Crystal structure of human OTUB1/UbcH5b~Ub/Ub
分子名称: Polyubiquitin-C, Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1
著者Juang, Y.C, Sanches, M, Sicheri, F.
登録日2012-01-18
公開日2012-02-22
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.2987 Å)
主引用文献OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function.
Mol.Cell, 45, 2012
7R5K
DownloadVisualize
BU of 7r5k by Molmil
Human nuclear pore complex (constricted)
分子名称: Aladin, E3 SUMO-protein ligase RanBP2, Nuclear pore complex protein Nup107, ...
著者Mosalaganti, S, Obarska-Kosinska, A, Siggel, M, Taniguchi, R, Turonova, B, Zimmerli, C.E, Buczak, K, Schmidt, F.H, Margiotta, E, Mackmull, M.T, Hagen, W.J.H, Hummer, G, Kosinski, J, Beck, M.
登録日2022-02-10
公開日2022-06-22
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (12 Å)
主引用文献AI-based structure prediction empowers integrative structural analysis of human nuclear pores.
Science, 376, 2022
7R5J
DownloadVisualize
BU of 7r5j by Molmil
Human nuclear pore complex (dilated)
分子名称: Aladin, E3 SUMO-protein ligase RanBP2, Nuclear pore complex protein Nup107, ...
著者Mosalaganti, S, Obarska-Kosinska, A, Siggel, M, Taniguchi, R, Turonova, B, Zimmerli, C.E, Buczak, K, Schmidt, F.H, Margiotta, E, Mackmull, M.T, Hagen, W.J.H, Hummer, G, Kosinski, J, Beck, M.
登録日2022-02-10
公開日2022-09-21
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (50 Å)
主引用文献AI-based structure prediction empowers integrative structural analysis of human nuclear pores
Science, 376, 2022
5NGZ
DownloadVisualize
BU of 5ngz by Molmil
Ube2T in complex with fragment EM04
分子名称: 1-(1,3-benzothiazol-2-yl)methanamine, Ubiquitin-conjugating enzyme E2 T
著者Morreale, F.E, Bortoluzzi, A, Chaugule, V.K, Arkinson, C, Walden, H, Ciulli, A.
登録日2017-03-21
公開日2017-05-03
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Allosteric Targeting of the Fanconi Anemia Ubiquitin-Conjugating Enzyme Ube2T by Fragment Screening.
J. Med. Chem., 60, 2017
5MGV
DownloadVisualize
BU of 5mgv by Molmil
Kinetic and Structural Changes in HsmtPheRS, Induced by Pathogenic Mutations in Human FARS2
分子名称: Phenylalanine--tRNA ligase, mitochondrial
著者Kartvelishvili, E, Tworowski, D, Vernon, H, Chrzanowska-Lightowlers, Z, Moor, N, Wang, J, Wong, L.-J, Safro, M.
登録日2016-11-22
公開日2017-05-03
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Kinetic and structural changes in HsmtPheRS, induced by pathogenic mutations in human FARS2.
Protein Sci., 26, 2017
5JH5
DownloadVisualize
BU of 5jh5 by Molmil
Structural Basis for the Hierarchical Assembly of the Core of PRC1.1
分子名称: BCL-6 corepressor-like protein 1, Lysine-specific demethylase 2B, Polycomb group RING finger protein 1, ...
著者Wong, S.J, Taylor, A.B, Hart, P.J, Kim, C.A.
登録日2016-04-20
公開日2016-09-14
最終更新日2016-10-19
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献KDM2B Recruitment of the Polycomb Group Complex, PRC1.1, Requires Cooperation between PCGF1 and BCORL1.
Structure, 24, 2016
6NIF
DownloadVisualize
BU of 6nif by Molmil
crystal structure of human REV7-RAN complex
分子名称: hREV7, GTP-binding nuclear protein Ran, hREV3 fusion
著者Wang, X, Pertz, L, Hua, D.P, Zhang, T.Q, Listovsky, T, Xie, W.
登録日2018-12-27
公開日2019-09-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.002 Å)
主引用文献REV7 has a dynamic adaptor region to accommodate small GTPase RAN/ShigellaIpaB ligands, and its activity is regulated by the RanGTP/GDP switch.
J.Biol.Chem., 294, 2019
3C6O
DownloadVisualize
BU of 3c6o by Molmil
Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling
分子名称: (2S)-2-(1H-indol-3-yl)hexanoic acid, INOSITOL HEXAKISPHOSPHATE, SKP1-like protein 1A, ...
著者Tan, X.
登録日2008-02-04
公開日2008-04-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Small-molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling.
Proc.Natl.Acad.Sci.Usa, 105, 2008
6DJW
DownloadVisualize
BU of 6djw by Molmil
Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex
分子名称: RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase, Ubiquitin, Ubiquitin-conjugating enzyme E2 L3, ...
著者Sauve, V, Sung, G, Trempe, J.F, Gehring, K.
登録日2018-05-26
公開日2018-07-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (3.801 Å)
主引用文献Mechanism of parkin activation by phosphorylation.
Nat. Struct. Mol. Biol., 25, 2018
6HCF
DownloadVisualize
BU of 6hcf by Molmil
Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codon
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S.
登録日2018-08-14
公開日2018-10-17
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
Mol. Cell, 72, 2018
6HCM
DownloadVisualize
BU of 6hcm by Molmil
Structure of the rabbit collided di-ribosome (stalled monosome)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S.
登録日2018-08-15
公開日2018-10-17
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (6.8 Å)
主引用文献ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
Mol. Cell, 72, 2018
3C6N
DownloadVisualize
BU of 3c6n by Molmil
Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling
分子名称: (2S)-8-[(tert-butoxycarbonyl)amino]-2-(1H-indol-3-yl)octanoic acid, INOSITOL HEXAKISPHOSPHATE, SKP1-like protein 1A, ...
著者Tan, X, Zheng, N, Hayashi, K.
登録日2008-02-04
公開日2008-04-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Small-molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling.
Proc.Natl.Acad.Sci.Usa, 105, 2008
6HCJ
DownloadVisualize
BU of 6hcj by Molmil
Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S.
登録日2018-08-15
公開日2018-10-17
最終更新日2018-11-14
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
Mol. Cell, 72, 2018
6HCQ
DownloadVisualize
BU of 6hcq by Molmil
Structure of the rabbit collided di-ribosome (collided monosome)
分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ...
著者Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S.
登録日2018-08-16
公開日2018-10-17
最終更新日2018-11-14
実験手法ELECTRON MICROSCOPY (6.5 Å)
主引用文献ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
Mol. Cell, 72, 2018
3C6P
DownloadVisualize
BU of 3c6p by Molmil
Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling
分子名称: (2S)-2-(1H-indol-3-yl)pentanoic acid, INOSITOL HEXAKISPHOSPHATE, SKP1-like protein 1A, ...
著者Tan, X.
登録日2008-02-04
公開日2008-04-22
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Small-molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling.
Proc.Natl.Acad.Sci.Usa, 105, 2008
6DJX
DownloadVisualize
BU of 6djx by Molmil
Crystal Structure of pParkin-pUb-UbcH7 complex
分子名称: RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase, Ubiquitin, Ubiquitin-conjugating enzyme E2 L3, ...
著者Sauve, V, Sung, G, Trempe, J.F, Gehring, K.
登録日2018-05-27
公開日2018-07-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (4.801 Å)
主引用文献Mechanism of parkin activation by phosphorylation.
Nat. Struct. Mol. Biol., 25, 2018
1XO0
DownloadVisualize
BU of 1xo0 by Molmil
High resolution structure of the holliday junction intermediate in cre-loxp site-specific recombination
分子名称: Recombinase CRE, loxP
著者Ghosh, K, Lau, C.K, Guo, F, Segall, A.M, Van Duyne, G.D.
登録日2004-10-05
公開日2004-12-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Peptide trapping of the Holliday junction intermediate in Cre-loxP site-specific recombination.
J.Biol.Chem., 280, 2005
4QDI
DownloadVisualize
BU of 4qdi by Molmil
Crystal structure II of MurF from Acinetobacter baumannii
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者An, Y.J, Jeong, C.S, Cha, S.S.
登録日2014-05-13
公開日2015-04-01
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献ATP-binding mode including a carbamoylated lysine and two Mg(2+) ions, and substrate-binding mode in Acinetobacter baumannii MurF
Biochem.Biophys.Res.Commun., 450, 2014
1GGM
DownloadVisualize
BU of 1ggm by Molmil
GLYCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH GLYCYL-ADENYLATE
分子名称: GLYCYL-ADENOSINE-5'-PHOSPHATE, Glycine--tRNA ligase
著者Arnez, J.G, Moras, D.
登録日1999-01-27
公開日1999-01-28
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Glycyl-tRNA synthetase uses a negatively charged pit for specific recognition and activation of glycine.
J.Mol.Biol., 286, 1999
7BBF
DownloadVisualize
BU of 7bbf by Molmil
Crystal structure of ubiquitin charged Ube2N (Ube2N~Ub) in complex with Ube2V2
分子名称: Polyubiquitin-C, Ubiquitin-conjugating enzyme E2 N, Ubiquitin-conjugating enzyme E2 variant 2
著者Kiss, L, Neuhaus, D, James, L.C.
登録日2020-12-17
公開日2021-01-27
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.54 Å)
主引用文献RING domains act as both substrate and enzyme in a catalytic arrangement to drive self-anchored ubiquitination.
Nat Commun, 12, 2021
7L9P
DownloadVisualize
BU of 7l9p by Molmil
Structure of human SHLD2-SHLD3-REV7-TRIP13(E253Q) complex
分子名称: Mitotic spindle assembly checkpoint protein MAD2B, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, Pachytene checkpoint protein 2 homolog, ...
著者Xie, W, Patel, D.J.
登録日2021-01-04
公開日2021-03-03
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.6 Å)
主引用文献Molecular mechanisms of assembly and TRIP13-mediated remodeling of the human Shieldin complex.
Proc.Natl.Acad.Sci.USA, 118, 2021
7JTP
DownloadVisualize
BU of 7jtp by Molmil
Crystal structure of Protac MS67 in complex with the WD repeat-containing protein 5 and pVHL:ElonginC:ElonginB
分子名称: Elongin-B, Elongin-C, GLYCEROL, ...
著者Kottur, J, Jain, R, Aggarwal, A.K.
登録日2020-08-18
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.12 Å)
主引用文献A selective WDR5 degrader inhibits acute myeloid leukemia in patient-derived mouse models.
Sci Transl Med, 13, 2021
7JTO
DownloadVisualize
BU of 7jto by Molmil
Crystal structure of Protac MS33 in complex with the WD repeat-containing protein 5 and pVHL:ElonginC:ElonginB
分子名称: 1,2-ETHANEDIOL, 3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide, Elongin-B, ...
著者Kottur, J, Jain, R, Aggarwal, A.K.
登録日2020-08-18
公開日2021-10-06
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A selective WDR5 degrader inhibits acute myeloid leukemia in patient-derived mouse models.
Sci Transl Med, 13, 2021

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon