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4P5O
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Structure of an RBX1-UBC12~NEDD8-CUL1-DCN1 complex: a RING-E3-E2~ubiquitin-like protein-substrate intermediate trapped in action
分子名称: Cullin-1, DCN1-like protein 1, E3 ubiquitin-protein ligase RBX1, ...
著者Scott, D.C, Schulman, B.A.
登録日2014-03-18
公開日2014-07-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (3.1071 Å)
主引用文献Structure of a RING E3 Trapped in Action Reveals Ligation Mechanism for the Ubiquitin-like Protein NEDD8.
Cell, 157, 2014
3LZX
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BU of 3lzx by Molmil
Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II)
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase 2, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
著者Komori, H, Seo, D, Sakurai, T, Higuchi, Y.
登録日2010-03-02
公開日2010-12-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity
Protein Sci., 19, 2010
7PWH
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Structure of the dTDP-sugar epimerase StrM
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, THYMIDINE-5'-DIPHOSPHATE, ...
著者Cross, A.R, Harmer, N.J, Isupov, M.N.
登録日2021-10-06
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.
J.Biol.Chem., 298, 2022
8IIA
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BU of 8iia by Molmil
Crystal structure of the oligomeric state of the extracellular domain of human myelin protein zero(MPZ/P0)
分子名称: GLYCEROL, Myelin protein P0
著者Sakakura, M, Tanabe, M, Mio, K.
登録日2023-02-24
公開日2023-08-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structural bases for the Charcot-Marie-Tooth disease induced by single amino acid substitutions of myelin protein zero.
Structure, 31, 2023
8IR1
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BU of 8ir1 by Molmil
human nuclear pre-60S ribosomal particle - State A
分子名称: 28S rRNA, 5.8S rRMA, 5S RNA, ...
著者Zhang, Y, Gao, N.
登録日2023-03-17
公開日2023-08-09
最終更新日2023-11-15
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Visualizing the nucleoplasmic maturation of human pre-60S ribosomal particles.
Cell Res., 33, 2023
7SC1
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BU of 7sc1 by Molmil
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, R40-1G8
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, R40-1G8 Fab heavy chain, R40-1G8 Fab light chain, ...
著者Fan, C, Bjorkman, P.J.
登録日2021-09-26
公開日2022-02-02
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献Discovery of ultrapotent broadly neutralizing antibodies from SARS-CoV-2 elite neutralizers.
Cell Host Microbe, 30, 2022
8CM9
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BU of 8cm9 by Molmil
Structure of human O-GlcNAc transferase in complex with UDP and tP11
分子名称: PHE-MET-PRO-LYS-TYR-SER-ILE, UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit, URIDINE-5'-DIPHOSPHATE
著者Meek, R.W, Davies, G.J.
登録日2023-02-18
公開日2023-10-04
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Phage display uncovers a sequence motif that drives polypeptide binding to a conserved regulatory exosite of O-GlcNAc transferase.
Proc.Natl.Acad.Sci.USA, 120, 2023
4P9H
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BU of 4p9h by Molmil
Crystal structure of 8ANC195 Fab in complex with gp120 of 93TH057 HIV-1 and soluble CD4 D1D2
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Scharf, L, Bjorkman, P.J.
登録日2014-04-04
公開日2014-05-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Antibody 8ANC195 Reveals a Site of Broad Vulnerability on the HIV-1 Envelope Spike.
Cell Rep, 7, 2014
7N7I
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BU of 7n7i by Molmil
X-ray crystal structure of Viperin-like enzyme from Trichoderma virens
分子名称: IRON/SULFUR CLUSTER, S-ADENOSYLMETHIONINE, URIDINE 5'-TRIPHOSPHATE, ...
著者Grove, T.L, Almo, S.C, Bonanno, J.B, Lachowicz, J.C, Gizzi, A.G.
登録日2021-06-10
公開日2021-06-30
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (3.19 Å)
主引用文献Structural Insight into the Substrate Scope of Viperin and Viperin-like Enzymes from Three Domains of Life.
Biochemistry, 60, 2021
3M31
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BU of 3m31 by Molmil
Structure of the C150A/C295A mutant of S. cerevisiae Ero1p
分子名称: 1-ETHYL-PYRROLIDINE-2,5-DIONE, CADMIUM ION, Endoplasmic oxidoreductin-1, ...
著者Heldman, N, Fass, D.
登録日2010-03-08
公開日2010-11-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Steps in reductive activation of the disulfide-generating enzyme Ero1p
Protein Sci., 19, 2010
8C8G
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BU of 8c8g by Molmil
Cryo-EM structure of BoNT/Wo-NTNH complex
分子名称: Putative botulinum-like toxin Wo, Structural protein
著者Kosenina, S, Skerlova, J, Stenmark, P.
登録日2023-01-20
公開日2023-10-04
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献The cryo-EM structure of the BoNT/Wo-NTNH complex reveals two immunoglobulin-like domains.
Febs J., 291, 2024
4PA0
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BU of 4pa0 by Molmil
Omecamtiv Mercarbil binding site on the Human Beta-Cardiac Myosin Motor Domain
分子名称: GLYCEROL, Myosin-7,Green fluorescent protein, methyl 4-(2-fluoro-3-{[(6-methylpyridin-3-yl)carbamoyl]amino}benzyl)piperazine-1-carboxylate
著者Winkelmann, D.A, Miller, M.T, Stock, A.M.
登録日2014-04-06
公開日2015-07-08
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural basis for drug-induced allosteric changes to human beta-cardiac myosin motor activity.
Nat Commun, 6, 2015
3CLX
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BU of 3clx by Molmil
Crystal structure of XIAP BIR3 domain in complex with a Smac-mimetic compound, Smac005
分子名称: (3S,6S,7S,9aS)-6-{[(2S)-2-aminobutanoyl]amino}-N-(diphenylmethyl)-7-(hydroxymethyl)-5-oxooctahydro-1H-pyrrolo[1,2-a]azepine-3-carboxamide, Baculoviral IAP repeat-containing protein 4, ZINC ION
著者Milani, M, Mastrangelo, E, Cossu, F.
登録日2008-03-20
公開日2008-10-28
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Targeting the X-linked inhibitor of apoptosis protein through 4-substituted azabicyclo[5.3.0]alkane smac mimetics. Structure, activity, and recognition principles.
J.Mol.Biol., 384, 2008
3CMH
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BU of 3cmh by Molmil
SYNTHETIC LINEAR TRUNCATED ENDOTHELIN-1 AGONIST
分子名称: PROTEIN (ENDOTHELIN-1)
著者Hewage, C.M, Jiang, L, Parkinson, J.A, Ramage, R, Sadler, I.H.
登録日1998-09-03
公開日1999-09-29
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of a novel ETB receptor selective agonist ET1-21 [Cys(Acm)1,15, Aib3,11, Leu7] by nuclear magnetic resonance spectroscopy and molecular modelling.
J.Pept.Res., 53, 1999
7SGM
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BU of 7sgm by Molmil
Crystal structure of a Fab variant containing a fluorescent noncanonical amino acid with blocked excited state proton transfer and in complex with its antigen, CD40L
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 5c8* Fab heavy chain, ...
著者Henderson, J.N, Mills, J.H, Simmons, C.R.
登録日2021-10-06
公開日2022-02-02
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural Basis for Blocked Excited State Proton Transfer in a Fluorescent, Photoacidic Non-Canonical Amino Acid-Containing Antibody Fragment.
J.Mol.Biol., 434, 2022
8CQL
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BU of 8cql by Molmil
pVHL:EloB:EloC in complex with (2S,4R)-N-((S)-1-(5-Fluoro-2-methoxy-4-(4-methylthiazol-5-yl)phenyl)ethyl)-1-((S)-2-(1-fluorocyclopropane-1-carboxamido)-3,3-dimethylbutanoyl)-4-hydroxypyrrolidine-2-carboxamide (Compound 33)
分子名称: (2~{S},4~{R})-1-[(2~{S})-2-[(1-fluoranylcyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-~{N}-[(1~{S})-1-[5-fluoranyl-2-methoxy-4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide, Elongin-B, Elongin-C, ...
著者Casement, R, Phuong Vu, L, Ciulli, A, Gutschow, M.
登録日2023-03-06
公開日2023-09-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Expanding the Structural Diversity at the Phenylene Core of Ligands for the von Hippel-Lindau E3 Ubiquitin Ligase: Development of Highly Potent Hypoxia-Inducible Factor-1 alpha Stabilizers.
J.Med.Chem., 66, 2023
3EL6
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BU of 3el6 by Molmil
Crystal Structure of the Erythromycin Dehydratase
分子名称: CHLORIDE ION, Erythromycin dehydratase, SULFATE ION
著者Keatinge-Clay, A.T.
登録日2008-09-20
公開日2008-11-11
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of the erythromycin polyketide synthase dehydratase.
J.Mol.Biol., 384, 2008
4PC2
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BU of 4pc2 by Molmil
Elongation factor Tu:Ts complex with a bound GDP
分子名称: CHLORIDE ION, Elongation factor Ts, Elongation factor Tu, ...
著者Thirup, S.S.
登録日2014-04-14
公開日2015-05-06
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.1999 Å)
主引用文献Structural outline of the detailed mechanism for elongation factor Ts-mediated guanine nucleotide exchange on elongation factor Tu.
J.Struct.Biol., 191, 2015
7SX4
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BU of 7sx4 by Molmil
Human NALCN-FAM155A-UNC79-UNC80 channelosome with CaM bound, conformation 2/2
分子名称: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Kschonsak, M, Chua, H.C, Weidling, C, Chakouri, N, Noland, C.L, Schott, K, Chang, T, Tam, C, Patel, N, Arthur, C.P, Leitner, A, Ben-Johny, M, Ciferri, C, Pless, S.A, Payandeh, J.
登録日2021-11-22
公開日2021-12-29
最終更新日2022-03-16
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Structural architecture of the human NALCN channelosome.
Nature, 603, 2022
8CQK
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BU of 8cqk by Molmil
pVHL:EloB:EloC in complex with (2S,4R)-1-((S)-2-(1-Fluorocyclopropane-1-carboxamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-1-(2-methyl-4-(4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (Compound 30)
分子名称: (2~{S},4~{R})-1-[(2~{S})-2-[(1-fluoranylcyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-~{N}-[(1~{S})-1-[2-methyl-4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl]-4-oxidanyl-pyrrolidine-2-carboxamide, Elongin-B, Elongin-C, ...
著者Casement, R, Phuong Vu, L, Ciulli, A, Gutschow, M.
登録日2023-03-06
公開日2023-09-27
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.62 Å)
主引用文献Expanding the Structural Diversity at the Phenylene Core of Ligands for the von Hippel-Lindau E3 Ubiquitin Ligase: Development of Highly Potent Hypoxia-Inducible Factor-1 alpha Stabilizers.
J.Med.Chem., 66, 2023
3MA3
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BU of 3ma3 by Molmil
Crystal structure of human proto-oncogene serine threonine kinase (PIM1) in complex with a consensus peptide and a naphtho-difuran ligand
分子名称: Pimtide, Proto-oncogene serine/threonine-protein kinase pim-1, naphtho[2,1-b:7,6-b']difuran-2,8-dicarboxylic acid
著者Filippakopoulos, P, Bullock, A, Fedorov, O, Vollmar, M, von Delft, F, Cochet, C, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
登録日2010-03-23
公開日2010-04-14
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献New potent dual inhibitors of CK2 and Pim kinases: discovery and structural insights.
Faseb J., 24, 2010
7PWI
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BU of 7pwi by Molmil
Structure of the dTDP-sugar epimerase StrM
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, dTDP-4-keto-rhamnose 3,5-epimerase,dTDP-4-dehydrorhamnose 3,5-epimerase
著者Cross, A.R, Harmer, N.J, Isupov, M.N.
登録日2021-10-06
公開日2022-04-20
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.326 Å)
主引用文献Spinning sugars in antigen biosynthesis: characterization of the Coxiella burnetii and Streptomyces griseus TDP-sugar epimerases.
J.Biol.Chem., 298, 2022
8IG1
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BU of 8ig1 by Molmil
Crystal structure of wild-type transthyretin in complex with rafoxanide
分子名称: SODIUM ION, Transthyretin, ~{N}-[3-chloranyl-4-(4-chloranylphenoxy)phenyl]-3,5-bis(iodanyl)-2-oxidanyl-benzamide
著者Yokoyama, T.
登録日2023-02-20
公開日2023-08-16
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.451 Å)
主引用文献Rafoxanide, a salicylanilide anthelmintic, interacts with human plasma protein transthyretin.
Febs J., 290, 2023
8CNJ
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BU of 8cnj by Molmil
HRas(1-166) in complex with GDP and BeF3-
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, BERYLLIUM TRIFLUORIDE ION, GTPase HRas, ...
著者Baumann, P, Jin, Y.
登録日2023-02-23
公開日2023-09-27
最終更新日2024-04-10
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Far-reaching effects of tyrosine64 phosphorylation on Ras revealed with BeF 3 - complexes.
Commun Chem, 7, 2024
2Y8S
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Co-structure of an AMA1 mutant (Y230A) with a surface exposed region of RON2 from Toxoplasma gondii
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, APICAL MEMBRANE ANTIGEN, PUTATIVE, ...
著者Tonkin, M.L, Roques, M, Lamarque, M.H, Pugniere, M, Douguet, D, Crawford, J, Lebrun, M, Boulanger, M.J.
登録日2011-02-10
公開日2011-08-03
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Host Cell Invasion by Apicomplexan Parasites: Insights from the Co-Structure of Ama1 with a Ron2 Peptide
Science, 333, 2011

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