PDB: 71589 件ウェブページステータス検索Chemie searchBIRD

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1Z6Q	Glycogen phosphorylase with inhibitor in the AMP site 分子名称: 4-{2,4-BIS[(3-NITROBENZOYL)AMINO]PHENOXY}PHTHALIC ACID, Glycogen phosphorylase, muscle form 著者 Kristiansen, M, Andersen, B, Iversen, L.F, Westergaard, N. 登録日 2005-03-23 公開日 2005-04-12 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.03 Å) 主引用文献 Identification, synthesis and chracterization of new glycogen phosphorylase inhibitors binding to the allosteric AMP site J.Med.Chem., 47, 2004
1QZD	EF-Tu.kirromycin coordinates fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome 分子名称: Elongation factor Tu 著者 Valle, M, Zavialov, A, Li, W, Stagg, S.M, Sengupta, J, Nielsen, R.C, Nissen, P, Harvey, S.C, Ehrenberg, M, Frank, J. 登録日 2003-09-16 公開日 2003-11-04 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy Nat.Struct.Biol., 10, 2003
2YU9	RNA polymerase II elongation complex in 150 mm MG+2 with UTP 分子名称: 28-MER DNA template strand, 5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3', 5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3', ... 著者 Wang, D, Bushnell, D.A, Westover, K.D, Kaplan, C.D, Kornberg, R.D. 登録日 2007-04-06 公開日 2007-04-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (3.4 Å) 主引用文献 Structural Basis of Transcription: Role of the Trigger Loop in Substrate Specificity and Catalysis Cell(Cambridge,Mass.), 127, 2006
3LUH	Crystal structure of MID domain from hAGO2 in complex with GMP 分子名称: GUANOSINE-5'-MONOPHOSPHATE, PHOSPHATE ION, Protein argonaute-2 著者 Frank, F, Sonenberg, N, Nagar, B. 登録日 2010-02-17 公開日 2010-05-26 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (1.999 Å) 主引用文献 Structural basis for 5'-nucleotide base-specific recognition of guide RNA by human AGO2. Nature, 465, 2010
1QY2	Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein 分子名称: 2-ISOPROPYL-3-METHOXYPYRAZINE, CADMIUM ION, Major Urinary Protein, ... 著者 Bingham, R.J, Findlay, J.B.C, Hsieh, S.-Y, Kalverda, A.P, Kjellberg, A, Perazzolo, C, Phillips, S.E.V, Seshadri, K, Trinh, C.H, Turnbull, W.B, Bodenhausen, G, Homans, S.W. 登録日 2003-09-09 公開日 2004-02-24 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Thermodynamics of Binding of 2-Methoxy-3-isopropylpyrazine and 2-Methoxy-3-isobutylpyrazine to the Major Urinary Protein. J.Am.Chem.Soc., 126, 2004
1QZB	Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state 分子名称: Phe-tRNA 著者 Valle, M, Zavialov, A, Li, W, Stagg, S.M, Sengupta, J, Nielsen, R.C, Nissen, P, Harvey, S.C, Ehrenberg, M, Frank, J. 登録日 2003-09-16 公開日 2003-11-04 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (9 Å) 主引用文献 Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy Nat.Struct.Biol., 10, 2003
1QY1	Thermodynamics of Binding of 2-methoxy-3-isopropylpyrazine and 2-methoxy-3-isobutylpyrazine to the Major Urinary Protein 分子名称: 2-ISOBUTYL-3-METHOXYPYRAZINE, CADMIUM ION, Major Urinary Protein, ... 著者 Bingham, R.J, Findlay, J.B.C, Hsieh, S.-Y, Kalverda, A.P, Kjellberg, A, Perazzolo, C, Phillips, S.E.V, Seshadri, K, Trinh, C.H, Turnbull, W.B, Bodenhausen, G, Homans, S.W. 登録日 2003-09-09 公開日 2004-02-24 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Thermodynamics of Binding of 2-Methoxy-3-isopropylpyrazine and 2-Methoxy-3-isobutylpyrazine to the Major Urinary Protein. J.Am.Chem.Soc., 126, 2004
7YXA	XFEL crystal structure of the human sphingosine 1 phosphate receptor 5 in complex with ONO-5430608 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[6-(2-naphthalen-1-ylethoxy)-2,3,4,5-tetrahydro-1H-3-benzazepin-3-ium-3-yl]butanoic acid, ... 著者 Lyapina, E, Marin, E, Gusach, A, Orekhov, P, Gerasimov, A, Luginina, A, Vakhrameev, D, Ergasheva, M, Kovaleva, M, Khusainov, G, Khorn, P, Shevtsov, M, Kovalev, K, Okhrimenko, I, Bukhdruker, S, Popov, P, Hu, H, Weierstall, U, Liu, W, Cho, Y, Gushchin, I, Rogachev, A, Bourenkov, G, Park, S, Park, G, Huyn, H.J, Park, J, Gordeliy, V, Borshchevskiy, V, Mishin, A, Cherezov, V. 登録日 2022-02-15 公開日 2022-08-10 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural basis for receptor selectivity and inverse agonism in S1P 5 receptors. Nat Commun, 13, 2022
1Z1G	Crystal structure of a lambda integrase tetramer bound to a Holliday junction 分子名称: 25-MER, 29-MER, 5'-D(*AP*CP*AP*GP*GP*TP*CP*AP*CP*TP*AP*TP*CP*AP*GP*TP*CP*AP*AP*AP*AP*TP*AP*CP*C)-3', ... 著者 Biswas, T, Aihara, H, Radman-Livaja, M, Filman, D, Landy, A, Ellenberger, T. 登録日 2005-03-03 公開日 2005-06-28 最終更新日 2021-10-20 実験手法 X-RAY DIFFRACTION (4.4 Å) 主引用文献 A structural basis for allosteric control of DNA recombination by lambda integrase. Nature, 435, 2005
6AM7	Engineered tryptophan synthase b-subunit from Pyrococcus furiosus, PfTrpB2B9 分子名称: PHOSPHATE ION, SODIUM ION, Tryptophan synthase beta chain 1 著者 Buller, A.R, van Roye, P. 登録日 2017-08-09 公開日 2018-05-16 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.47 Å) 主引用文献 Directed Evolution Mimics Allosteric Activation by Stepwise Tuning of the Conformational Ensemble. J. Am. Chem. Soc., 140, 2018
1QZA	Coordinates of the A/T site tRNA model fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome 分子名称: Phe-tRNA 著者 Valle, M, Zavialov, A, Li, W, Stagg, S.M, Sengupta, J, Nielsen, R.C, Nissen, P, Harvey, S.C, Ehrenberg, M, Frank, J. 登録日 2003-09-16 公開日 2003-11-04 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy Nat.Struct.Biol., 10, 2003
2P49	Complex of a camelid single-domain vhh antibody fragment with RNASE A at 1.4A resolution: native mono_1 crystal form 分子名称: ANTIBODY CAB-RN05, PHOSPHATE ION, Ribonuclease pancreatic 著者 Tereshko, V, Uysal, S, Margalef, K, Koide, A, Kossiakoff, A.A, Koide, S. 登録日 2007-03-11 公開日 2007-08-28 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.38 Å) 主引用文献 Exploring the capacity of minimalist protein interfaces: interface energetics and affinity maturation to picomolar KD of a single-domain antibody with a flat paratope. J.Mol.Biol., 373, 2007
1Z5C	Topoisomerase VI-B, ADP Pi bound dimer form 分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... 著者 Corbett, K.D, Berger, J.M. 登録日 2005-03-17 公開日 2005-06-14 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structural dissection of ATP turnover in the prototypical GHL ATPase TopoVI. Structure, 13, 2005
2A0P	Crystal structure of RNA oligomer containing 4'-thioribose 分子名称: 5'-R(*CP*CP*(S4C)P*CP*GP*GP*GP*G)-3' 著者 Haeberli, P, Berger, I, Pallan, P.S, Egli, M. 登録日 2005-06-16 公開日 2005-08-16 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Syntheses of 4'-thioribonucleosides and thermodynamic stability and crystal structure of RNA oligomers with incorporated 4'-thiocytosine Nucleic Acids Res., 33, 2005
2A2X	Orally Active Thrombin Inhibitors in Complex with Thrombin Inh12 分子名称: N-(CARBOXYMETHYL)-3-CYCLOHEXYL-D-ALANYL-N-({6-[AMINO(IMINO)METHYL]PYRIDIN-3-YL}METHYL)-N~2~-METHYL-L-ALANINAMIDE, Thrombin heavy chain, Thrombin light chain, ... 著者 Lange, U.E.W, Baucke, D, Hornberger, W, Mack, H, Seitz, W, Hoeffken, H.W. 登録日 2005-06-23 公開日 2006-11-14 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.44 Å) 主引用文献 Orally active thrombin inhibitors. Part 2: optimization of the P2-moiety BIOORG.MED.CHEM.LETT., 16, 2006
1QJH	Protein Aggregation and Alzheimer's Disease: Crystallographic Analysis of the Phenomenon. Engineered version of the ribosomal protein S6 used as a stable scaffold to study oligomerization. 分子名称: 30S ribosomal protein S6, MAGNESIUM ION 著者 Kristensen, O, Otzen, D.E, Oliveberg, M. 登録日 1999-06-24 公開日 2000-06-29 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Designed protein tetramer zipped together with a hydrophobic Alzheimer homology: a structural clue to amyloid assembly. Proc. Natl. Acad. Sci. U.S.A., 97, 2000
2QIR	Crystal structure of aminoglycoside acetyltransferase AAC(6')-Ib in complex whith coenzyme A and kanamycin 分子名称: (1R,2S,3S,4R,6S)-4,6-DIAMINO-3-[(3-AMINO-3-DEOXY-ALPHA-D-GLUCOPYRANOSYL)OXY]-2-HYDROXYCYCLOHEXYL 2,6-DIAMINO-2,6-DIDEOXY-ALPHA-D-GLUCOPYRANOSIDE, Aminoglycoside 6-N-acetyltransferase type Ib11, COENZYME A 著者 Maurice, F, Broutin, I, Podglajen, I, Benas, P, Collatz, E, Dardel, F. 登録日 2007-07-05 公開日 2008-04-08 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Enzyme structural plasticity and the emergence of broad-spectrum antibiotic resistance. Embo Rep., 9, 2008
1ZYQ	T7 DNA polymerase in complex with 8oG and incoming ddATP 分子名称: 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE, 5'-D(*CP*CP*CP*(8OG)P*CP*TP*GP*GP*CP*AP*CP*TP*GP*GP*CP*CP*GP*TP*CP*GP*TP*TP*TP*TP*CP*G)-3', 5'-D(*CP*GP*AP*AP*AP*AP*CP*GP*AP*CP*GP*GP*CP*CP*AP*GP*TP*GP*CP*CP*AP*(DDG))-3', ... 著者 Brieba, L.G, Kokoska, R.J, Bebenek, K, Kunkel, T.A, Ellenberger, T. 登録日 2005-06-10 公開日 2005-11-22 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 A lysine residue in the fingers subdomain of t7 DNA polymerase modulates the miscoding potential of 8-oxo-7,8-dihydroguanosine. Structure, 13, 2005
4FON	High Energy Remote SAD structure solution of Proteinase K from the 37.8 keV Tellurium K edge 分子名称: 1,2-ETHANEDIOL, CALCIUM ION, OXYGEN ATOM, ... 著者 Jakoncic, J. 登録日 2012-06-20 公開日 2012-08-22 実験手法 X-RAY DIFFRACTION (1.05 Å) 主引用文献 Macromolecular Crystallography at High(er) Energy To be Published
2A11	Crystal Structure of Nuclease Domain of Ribonuclase III from Mycobacterium Tuberculosis 分子名称: CALCIUM ION, Ribonuclease III 著者 Akey, D.L, Berger, J.M, Mycobacterium Tuberculosis Structural Proteomics Project (XMTB) 登録日 2005-06-17 公開日 2005-07-05 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Structure of the nuclease domain of ribonuclease III from M. tuberculosis at 2.1 A Protein Sci., 14, 2005
2A1E	High resolution structure of HIV-1 PR with TS-126 分子名称: ACETATE ION, CHLORIDE ION, DIMETHYL SULFOXIDE, ... 著者 Demitri, N, Geremia, S, Randaccio, L, Wuerges, J, Benedetti, F, Berti, F, Dinon, F, Campaner, P, Tell, G. 登録日 2005-06-20 公開日 2006-02-21 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (1.3 Å) 主引用文献 A potent HIV protease inhibitor identified in an epimeric mixture by high-resolution protein crystallography. Chemmedchem, 1, 2006
2ABR	Structure of D280A arginine deiminase with L-arginine forming a S-alkylthiouronium reaction intermediate 分子名称: Arginine deiminase 著者 Galkin, A, Lu, X, Dunaway-Mariano, D, Herzberg, O. 登録日 2005-07-15 公開日 2005-08-09 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase. J.Biol.Chem., 280, 2005
2A38	Crystal structure of the N-Terminus of titin 分子名称: CADMIUM ION, Titin 著者 Marino, M, Muhle-Goll, C, Svergun, D, Demirel, M, Mayans, O. 登録日 2005-06-24 公開日 2006-06-24 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 The Ig doublet Z1Z2: a model system for the hybrid analysis of conformational dynamics in Ig tandems from titin Structure, 14, 2006
2A9G	Structure of C406A arginine deiminase in complex with L-arginine 分子名称: ARGININE, Arginine deiminase 著者 Galkin, A, Lu, X, Dunaway-Mariano, D, Herzberg, O. 登録日 2005-07-11 公開日 2005-08-09 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal Structures Representing the Michaelis Complex and the Thiouronium Reaction Intermediate of Pseudomonas aeruginosa Arginine Deiminase. J.Biol.Chem., 280, 2005
2A1I	Crystal Structure of the Central Domain of Human ERCC1 分子名称: DNA excision repair protein ERCC-1, MERCURY (II) ION 著者 Tsodikov, O.V, Enzlin, J.H, Scharer, O.D, Ellenberger, T. 登録日 2005-06-20 公開日 2005-08-02 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.9 Å) 主引用文献 Crystal structure and DNA binding functions of ERCC1, a subunit of the DNA structure-specific endonuclease XPF-ERCC1. Proc.Natl.Acad.Sci.Usa, 102, 2005

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