PDB: 45953 件ウェブページステータス検索Chemie searchBIRD

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2KRF	NMR solution structure of the DNA binding domain of Competence protein A 分子名称: Transcriptional regulatory protein comA 著者 Hobbs, C.A, Bobay, B.G, Thompson, R.J, Perego, M, Cavanagh, J. 登録日 2009-12-16 公開日 2010-04-07 最終更新日 2024-05-08 実験手法 SOLUTION NMR 主引用文献 NMR solution structure and DNA-binding model of the DNA-binding domain of competence protein A. J.Mol.Biol., 398, 2010
2FF0	Solution Structure of Steroidogenic Factor 1 DNA Binding Domain Bound to its Target Sequence in the Inhibin alpha-subunit Promoter 分子名称: CTGTGGCCCTGAGCC, GGCTCAGGGCCACAG, Steroidogenic factor 1, ... 著者 Little, T.H, Zhang, Y, Matulis, C.K, Weck, J, Zhang, Z, Ramachandran, A, Mayo, K.E, Radhakrishnan, I. 登録日 2005-12-17 公開日 2006-04-11 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Sequence-specific deoxyribonucleic Acid (DNA) recognition by steroidogenic factor 1: a helix at the carboxy terminus of the DNA binding domain is necessary for complex stability. Mol.Endocrinol., 20, 2006
2FO1	Crystal Structure of the CSL-Notch-Mastermind ternary complex bound to DNA 分子名称: 5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)-3', 5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)-3', Lin-12 and glp-1 phenotype protein 1, ... 著者 Wilson, J.J, Kovall, R.A. 登録日 2006-01-12 公開日 2006-03-21 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Crystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA. Cell(Cambridge,Mass.), 124, 2006
7SXL	Plasmodium falciparum apicoplast DNA polymerase (exo-minus) without affinity tag 分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Nieto, N, Chheda, P, Kerns, R, Nelson, S, Honzatko, R. 登録日 2021-11-23 公開日 2022-10-26 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Promising antimalarials targeting apicoplast DNA polymerase from Plasmodium falciparum. Eur.J.Med.Chem., 243, 2022
3M8R	Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-ethylated dTTP 分子名称: 4'-ethylthymidine 5'-(tetrahydrogen triphosphate), ACETATE ION, DNA (5'-D(*AP*AP*AP*AP*GP*GP*CP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3'), ... 著者 Diederichs, K, Marx, A, Betz, K. 登録日 2010-03-19 公開日 2010-07-07 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structures of DNA polymerases caught processing size-augmented nucleotide probes. Angew.Chem.Int.Ed.Engl., 49, 2010
3M8S	Crystal structure of the large fragment of DNA polymerase I from Thermus aquaticus in a closed ternary complex with trapped 4'-methylated dTTP 分子名称: 4'-methylthymidine 5'-(tetrahydrogen triphosphate), ACETATE ION, DI(HYDROXYETHYL)ETHER, ... 著者 Diederichs, K, Marx, A, Betz, K. 登録日 2010-03-19 公開日 2010-07-07 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structures of DNA polymerases caught processing size-augmented nucleotide probes. Angew.Chem.Int.Ed.Engl., 49, 2010
6YEX	VcaM4I restriction endonuclease in the absence of DNA 分子名称: CHLORIDE ION, HNH endonuclease, SULFATE ION 著者 Pastor, M, Czapinska, H, Lutz, T, Helbrecht, I, Xu, S, Bochtler, M. 登録日 2020-03-25 公開日 2020-12-16 最終更新日 2024-05-15 実験手法 X-RAY DIFFRACTION (1.5 Å) 主引用文献 Crystal structures of the EVE-HNH endonuclease VcaM4I in the presence and absence of DNA. Nucleic Acids Res., 49, 2021
1JE8	Two-Component response regulator NarL/DNA Complex: DNA Bending Found in a High Affinity Site 分子名称: 5'-D(*CP*GP*TP*AP*CP*CP*CP*AP*TP*TP*AP*AP*TP*GP*GP*GP*TP*AP*CP*G)-3', Nitrate/Nitrite Response Regulator Protein NARL, SULFATE ION 著者 Maris, A.E, Sawaya, M.R, Kaczor-Grzeskowiak, M, Jarvis, M.R, Bearson, S.M.D, Kopka, M.L, Schroder, I, Gunsalus, R.P, Dickerson, R.E. 登録日 2001-06-15 公開日 2002-09-27 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.12 Å) 主引用文献 Dimerization allows DNA target site recognition by the NarL response regulator. Nat.Struct.Biol., 9, 2002
5LLQ	Crystal structure of Sulfolobus solfataricus O6-methylguanine methyltransferase C119F variant 分子名称: GLYCEROL, Methylated-DNA--protein-cysteine methyltransferase 著者 Miggiano, R, Rossi, F, Rizzi, M. 登録日 2016-07-28 公開日 2016-11-09 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Interdomain interactions rearrangements control the reaction steps of a thermostable DNA alkyltransferase. Biochim.Biophys.Acta, 1861, 2016
6UEU	Crystal structure of BF DNA polymerase F710Y mutant bound to tetrahydrofuran and dATP 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*GP*(3DR)P*AP*CP*GP*TP*GP*AP*TP*CP*G)-3'), ... 著者 Wu, E.Y, Beese, L.S. 登録日 2019-09-23 公開日 2020-09-30 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural basis for blockage of DNA synthesis by a thymine dimer lesion in a high-fidelity DNA polymerase To Be Published
2AYB	Crystal structure of HPV6a E2 DNA Binding Domain bound to a 16 base pair DNA target 分子名称: 5'-D(*CP*AP*AP*CP*CP*GP*AP*AP*TP*TP*CP*GP*GP*TP*TP*G)-3', Regulatory protein E2 著者 Hooley, E, Brady, R.L, Gaston, K. 登録日 2005-09-07 公開日 2006-08-22 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 The recognition of local DNA conformation by the human papillomavirus type 6 E2 protein. Nucleic Acids Res., 34, 2006
1D62	THE STRUCTURE OF A /B-DNA$ DECAMER WITH AN I(SLASH)*A MISMATCH AND COMPARISON WITH THE G(SLASH)*A MISMATCH 分子名称: 5'-D(*CP*CP*AP*AP*IP*AP*TP*TP*GP*G)-3' 著者 Lipanov, A, Kopka, M.L, Kaczor-Grzeskowiak, M, Dickerson, R.E. 登録日 1992-03-01 公開日 1993-07-15 最終更新日 2023-07-26 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of the B-DNA decamer C-C-A-A-C-I-T-T-G-G in two different space groups: conformational flexibility of B-DNA. Biochemistry, 32, 1993
6MDX	Mechanism of protease dependent DPC repair 分子名称: 1,2-ETHANEDIOL, CITRATE ANION, DNA (5'-D(P*CP*C)-3'), ... 著者 Li, F, Raczynska, J, Chen, Z, Yu, H. 登録日 2018-09-05 公開日 2019-04-10 最終更新日 2019-12-18 実験手法 X-RAY DIFFRACTION (1.55 Å) 主引用文献 Structural Insight into DNA-Dependent Activation of Human Metalloprotease Spartan. Cell Rep, 26, 2019
1ADR	DETERMINATION OF THE NUCLEAR MAGNETIC RESONANCE STRUCTURE OF THE DNA-BINDING DOMAIN OF THE P22 C2 REPRESSOR (1-76) IN SOLUTION AND COMPARISON WITH THE DNA-BINDING DOMAIN OF THE 434 REPRESSOR 分子名称: P22 C2 REPRESSOR 著者 Sevillasierra, P, Otting, G, Wuthrich, K. 登録日 1993-07-19 公開日 1994-01-31 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Determination of the nuclear magnetic resonance structure of the DNA-binding domain of the P22 c2 repressor (1 to 76) in solution and comparison with the DNA-binding domain of the 434 repressor. J.Mol.Biol., 235, 1994
6MXO	Structure of HPoleta incorporating dCTP opposite the 3-prime Pt(DACH)-GG 分子名称: (cyclohex-1-ene-1,2-diamine)platinum(2+), 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*CP*GP*GP*CP*TP*CP*AP*CP*AP*CP*T)-3'), ... 著者 Ouzon-Shubeita, H, Lee, S. 登録日 2018-10-31 公開日 2019-02-13 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Structural basis for the bypass of the major oxaliplatin-DNA adducts by human DNA polymerase eta. Biochem. J., 476, 2019
1OZJ	Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution 分子名称: SMAD 3, Smad binding element, ZINC ION 著者 Chai, J, Wu, J.-W, Yan, N, Massague, J, Pavletich, N.P, Shi, Y. 登録日 2003-04-09 公開日 2004-03-23 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Features of a Smad3 MH1-DNA complex. Roles of water and zinc in DNA binding. J.Biol.Chem., 278, 2003
4IRG	Uninhibited DNA-binding domain of the Ets transcription factor ERG 分子名称: Transcriptional regulator ERG 著者 Regan, M.C, Horanyi, P.S, Pryor, E.E, Sarver, J.L, Cafiso, D.S, Bushweller, J.H. 登録日 2013-01-14 公開日 2013-07-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Structural and dynamic studies of the transcription factor ERG reveal DNA binding is allosterically autoinhibited. Proc.Natl.Acad.Sci.USA, 110, 2013
7USF	Mouse mammary tumor virus strand transfer complex intasome 分子名称: CALCIUM ION, Integrase, ZINC ION, ... 著者 Jozwik, I, Lyumkis, D. 登録日 2022-04-25 公開日 2022-08-24 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 B-to-A transition in target DNA during retroviral integration. Nucleic Acids Res., 50, 2022
2PMU	Crystal structure of the DNA-binding domain of PhoP 分子名称: CHLORIDE ION, GLYCINE, PHOSPHATE ION, ... 著者 Wang, S. 登録日 2007-04-23 公開日 2008-02-26 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (1.779 Å) 主引用文献 Structure of the DNA-binding domain of the response regulator PhoP from Mycobacterium tuberculosis Biochemistry, 46, 2007
4G83	Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element 分子名称: Tumor protein p73, ZINC ION, dna 著者 Ethayathulla, A.S, Viadiu, H. 登録日 2012-07-20 公開日 2013-01-16 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (4 Å) 主引用文献 Crystal Structure of p73 DNA-Binding Domain Tetramer bound to a Full Response-Element J.Biol.Chem., 2013
3ERE	Crystal structure of the arginine repressor protein from Mycobacterium tuberculosis in complex with the DNA operator 分子名称: 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DAP*DAP*DCP*DGP*DAP*DTP*DGP*DCP*DAP*DA)-3', 5'-D(*DTP*DTP*DGP*DCP*DAP*DTP*DCP*DGP*DTP*DTP*DAP*DTP*DGP*DCP*DAP*DA)-3', Arginine repressor, ... 著者 Cherney, L.T, Cherney, M.M, Garen, C.R, Lu, G.J, James, M.N, TB Structural Genomics Consortium (TBSGC) 登録日 2008-10-01 公開日 2008-10-14 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structure of the arginine repressor protein in complex with the DNA operator from Mycobacterium tuberculosis. J.Mol.Biol., 384, 2008
2YPR	Crystal structure of the DNA binding ETS domain of human protein FEV 分子名称: GLYCEROL, PROTEIN FEV 著者 Allerston, C.K, Cooper, C, Vollmar, M, Krojer, T, von Delft, F, Weigelt, J, Arrowsmith, C.H, Bountra, C, Edwards, A, Gileadi, O. 登録日 2012-10-31 公開日 2013-01-16 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.64 Å) 主引用文献 Structures of the Ets Domains of Transcription Factors Etv1, Etv4, Etv5 and Fev: Determinants of DNA Binding and Redox Regulation by Disulfide Bond Formation. J.Biol.Chem., 290, 2015
1OWR	CRYSTAL STRUCTURE OF HUMAN NFAT1 BOUND MONOMERICALLY TO DNA 分子名称: NFAT1 Monomeric Binding Site, Minus Strand, Plus Strand, ... 著者 Stroud, J.C, Chen, L. 登録日 2003-03-29 公開日 2004-02-10 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structure of NFAT Bound to DNA as a Monomer J.Mol.Biol., 334, 2003
2BNW	Structural basis for cooperative binding of Ribbon-Helix-Helix Omega repressor to direct DNA heptad repeats 分子名称: 5'-D(*CP*TP*TP*GP*TP*GP*AP*TP*TP*TP *GP*TP*GP*AP*TP*TP*CP*G)-3', 5'-D(*GP*AP*AP*TP*CP*AP*CP*AP*AP*AP *TP*CP*AP*CP*AP*AP*GP*C)-3', ORF OMEGA 著者 Weihofen, W.A, Cicek, A, Pratto, F, Alonso, J.C, Saenger, W. 登録日 2005-04-05 公開日 2006-03-15 最終更新日 2023-12-13 実験手法 X-RAY DIFFRACTION (2.45 Å) 主引用文献 Structures of Omega Repressors Bound to Direct and Inverted DNA Repeats Explain Modulation of Transcription. Nucleic Acids Res., 34, 2006
1LO1	ESTROGEN RELATED RECEPTOR 2 DNA BINDING DOMAIN IN COMPLEX WITH DNA 分子名称: 5'-D(*CP*GP*TP*GP*AP*CP*CP*TP*TP*GP*AP*GP*C)-3', 5'-D(*GP*CP*TP*CP*AP*AP*GP*GP*TP*CP*AP*CP*G)-3', Steroid hormone receptor ERR2, ... 著者 Gearhart, M.D, Holmbeck, S.M.A, Evans, R.M, Dyson, H.J, Wright, P.E. 登録日 2002-05-05 公開日 2003-04-22 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Monomeric Complex of Human Orphan Estrogen Related Receptor-2 with DNA: A Pseudo-dimer Interface Mediates Extended Half-site Recognition J.Mol.Biol., 327, 2003

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