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9GD8
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NME1 94-Diphosphoserine
分子名称: Nucleoside diphosphate kinase A
著者Roderer, D, Schoepf, F, Fiedler, D, Celik, A.
登録日2024-08-05
公開日2025-06-11
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Nucleoside diphosphate kinase A (NME1) catalyzes its own oligophosphorylation
To Be Published
9GD6
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NME1 94-Phosphoserine
分子名称: Nucleoside diphosphate kinase A
著者Roderer, D, Schoepf, F, Fiedler, D, Celik, A.
登録日2024-08-05
公開日2025-06-11
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献Nucleoside diphosphate kinase A (NME1) catalyzes its own oligophosphorylation
To Be Published
9GD9
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NME1 94-Oligophosphoserine
分子名称: Nucleoside diphosphate kinase A
著者Roderer, D, Schoepf, F, Fiedler, D, Celik, A.
登録日2024-08-05
公開日2025-06-11
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献Nucleoside diphosphate kinase A (NME1) catalyzes its own oligophosphorylation
To Be Published
9DWJ
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Nucleosome containing a 1-nt gap at SHL-3.5
分子名称: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
著者Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
登録日2024-10-09
公開日2025-01-15
最終更新日2025-05-28
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Nucleosome containing a 1-nt gap at SHL-3.5
To Be Published
9DWL
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BU of 9dwl by Molmil
Nucleosome containing a 1-nt gap at SHL-5.5
分子名称: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
著者Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
登録日2024-10-09
公開日2025-01-15
最終更新日2025-05-21
実験手法ELECTRON MICROSCOPY (3.9 Å)
主引用文献Nucleosome containing a 1-nt gap at SHL-5.5
To Be Published
9DWF
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BU of 9dwf by Molmil
Nucleosome containing a 1-nt gap at SHL-4.5
分子名称: 601 I strand (damaged strand 1), 601 J strand (non-damaged strand), 601 K strand (damaged strand 2), ...
著者Weaver, T.M, Ryan, B.J, Freudenthal, B.D.
登録日2024-10-09
公開日2025-01-15
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Nucleosome containing a 1-nt gap at SHL-4.5
To Be Published
2MA7
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BU of 2ma7 by Molmil
Solution NMR Structure of Zinc finger protein Eos from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR7992A
分子名称: ZINC ION, Zinc finger protein Eos
著者Pulavarti, S.V, Mills, J.L, Wang, D, Jigabm, E, Hamilton, K, Xiao, R, Everett, J.K, Acton, T.B, Montelione, G.T, Szyperski, T, Northeast Structural Genomics Consortium (NESG)
登録日2013-06-28
公開日2013-09-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution NMR Structure of Zinc finger protein Eos from Homo sapiens, Northeast Structural Genomics Consortium (NESG) Target HR7992A
To be Published
1JLF
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BU of 1jlf by Molmil
CRYSTAL STRUCTURE OF Y188C MUTANT HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH NEVIRAPINE
分子名称: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, HIV-1 RT A-chain, HIV-1 RT B-chain
著者Ren, J, Nichols, C, Bird, L, Chamberlain, P, Weaver, K, Short, S, Stuart, D.I, Stammers, D.K.
登録日2001-07-16
公開日2001-10-03
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural mechanisms of drug resistance for mutations at codons 181 and 188 in HIV-1 reverse transcriptase and the improved resilience of second generation non-nucleoside inhibitors.
J.Mol.Biol., 312, 2001
3EEI
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BU of 3eei by Molmil
Crystal structure of 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from neisseria meningitidis in complex with methylthio-immucillin-A
分子名称: (3S,4R)-2-(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-5-[(METHYLSULFANYL)METHYL]PYRROLIDINE-3,4-DIOL, 5-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
著者Ho, M, Rinaldo-matthis, A, Brown, R.L, Norris, G.E, Tyler, P.C, Furneaux, R.H, Almo, S.C, Schramm, V.L.
登録日2008-09-04
公開日2009-09-08
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.78 Å)
主引用文献Crystal structure of 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase from neisseria meningitidis in complex with methylthio-immucillin-A
To be Published
2IC3
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BU of 2ic3 by Molmil
Crystal Structure of K103N/Y181C Mutant HIV-1 Reverse Transcriptase (RT) in Complex with Nonnucleoside Inhibitor HBY 097
分子名称: (S)-4-ISOPROPOXYCARBONYL-6-METHOXY-3-METHYLTHIOMETHYL-3,4-DIHYDROQUINOXALIN-2(1H)-THIONE, MANGANESE (II) ION, Reverse transcriptase/ribonuclease H (p51 RT), ...
著者Das, K, Arnold, E.
登録日2006-09-12
公開日2006-12-19
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal Structures of Clinically Relevant Lys103Asn/Tyr181Cys Double Mutant HIV-1 Reverse Transcriptase in Complexes with ATP and Non-nucleoside Inhibitor HBY 097.
J.Mol.Biol., 365, 2007
1M73
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CRYSTAL STRUCTURE OF HUMAN PNP AT 2.3A RESOLUTION
分子名称: PURINE NUCLEOSIDE PHOSPHORYLASE, SULFATE ION
著者De Azevedo Jr, W.F, Marangoni Dos Santos, D, Canduri, F, Santos, G.C, Olivieri, J.R, Silva, R.G, Basso, L.A, Palma, M.S, Santos, D.S.
登録日2002-07-18
公開日2003-09-16
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of human purine nucleoside phosphorylase at 2.3A resolution.
Biochem.Biophys.Res.Commun., 308, 2003
1RFG
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BU of 1rfg by Molmil
Crystal Structure of Human Purine Nucleoside Phosphorylase Complexed with Guanosine
分子名称: GUANOSINE, Purine nucleoside phosphorylase, SULFATE ION
著者Canduri, F, Silva, R.G, Dos Santos, D.M, Palma, M.S, Basso, L.A, Santos, D.S, de Azevedo, W.F.
登録日2003-11-09
公開日2004-12-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure of human PNP complexed with ligands.
Acta Crystallogr.,Sect.D, 61, 2005
2HND
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BU of 2hnd by Molmil
Crystal Structure of K101E Mutant HIV-1 Reverse Transcriptase in Complex with Nevirapine
分子名称: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, MAGNESIUM ION, PHOSPHATE ION, ...
著者Ren, J, Nichols, C.E, Stamp, A, Chamberlain, P.P, Stammers, D.K.
登録日2006-07-12
公開日2006-09-05
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138.
Febs J., 273, 2006
2HNY
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BU of 2hny by Molmil
Crystal Structure of E138K Mutant HIV-1 Reverse Transcriptase in Complex with Nevirapine
分子名称: 11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE, MAGNESIUM ION, PHOSPHATE ION, ...
著者Ren, J, Nichols, C.E, Stamp, A, Chamberlain, P.P, Stammers, D.K.
登録日2006-07-13
公開日2006-09-05
最終更新日2024-11-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural insights into mechanisms of non-nucleoside drug resistance for HIV-1 reverse transcriptases mutated at codons 101 or 138.
Febs J., 273, 2006
1RTJ
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BU of 1rtj by Molmil
MECHANISM OF INHIBITION OF HIV-1 REVERSE TRANSCRIPTASE BY NON-NUCLEOSIDE INHIBITORS
分子名称: HIV-1 REVERSE TRANSCRIPTASE
著者Ren, J, Esnouf, R, Ross, C, Jones, Y, Stammers, D, Stuart, D.
登録日1995-05-03
公開日1996-04-03
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Mechanism of inhibition of HIV-1 reverse transcriptase by non-nucleoside inhibitors.
Nat.Struct.Biol., 2, 1995
8QO9
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BU of 8qo9 by Molmil
Cryo-EM structure of a human spliceosomal B complex protomer
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, MINX pre-mRNA, Microfibrillar-associated protein 1, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Urlaub, H, Stark, H, Luehrmann, R.
登録日2023-09-28
公開日2024-01-24
最終更新日2025-07-09
実験手法ELECTRON MICROSCOPY (5.29 Å)
主引用文献Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins.
Embo J., 43, 2024
1QE5
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BU of 1qe5 by Molmil
PURINE NUCLEOSIDE PHOSPHORYLASE FROM CELLULOMONAS SP. IN COMPLEX WITH PHOSPHATE
分子名称: CALCIUM ION, PENTOSYLTRANSFERASE, PHOSPHATE ION
著者Tebbe, J, Bzowska, A, Wielgus-Kutrowska, B, Schroeder, W, Kazimierczuk, Z, Shugar, D, Saenger, W, Koellner, G.
登録日1999-07-13
公開日1999-12-12
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the purine nucleoside phosphorylase (PNP) from Cellulomonas sp. and its implication for the mechanism of trimeric PNPs.
J.Mol.Biol., 294, 1999
7U50
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BU of 7u50 by Molmil
APE1 bound to a nucleosome core particle with AP-site at SHL-6
分子名称: DNA (144-MER), DNA (145-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
著者Weaver, T.M, Freudenthal, B.D.
登録日2022-03-01
公開日2022-09-07
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural basis for APE1 processing DNA damage in the nucleosome.
Nat Commun, 13, 2022
8Q7N
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BU of 8q7n by Molmil
cryo-EM structure of the human spliceosomal B complex protomer (tri-snRNP core region)
分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, MINX pre-mRNA, Microfibrillar-associated protein 1, ...
著者Zhang, Z, Kumar, V, Dybkov, O, Will, C.L, Urlaub, H, Stark, H, Luehrmann, R.
登録日2023-08-16
公開日2024-01-24
最終更新日2024-10-23
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献Cryo-EM analyses of dimerized spliceosomes provide new insights into the functions of B complex proteins.
Embo J., 43, 2024
8HE5
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BU of 8he5 by Molmil
RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
分子名称: DNA (198-MER), DNA repair protein, DNA-directed RNA polymerase subunit, ...
著者Osumi, K, Kujirai, T, Ehara, H, Kinoshita, C, Saotome, M, Kagawa, W, Sekine, S, Takizawa, Y, Kurumizaka, H.
登録日2022-11-07
公開日2023-07-05
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (6.95 Å)
主引用文献Structural Basis of Damaged Nucleotide Recognition by Transcribing RNA Polymerase II in the Nucleosome.
J.Mol.Biol., 435, 2023
8G57
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BU of 8g57 by Molmil
Structure of nucleosome-bound Sirtuin 6 deacetylase
分子名称: DNA strand 1, DNA strand 2, Histone H2A type 1-B/E, ...
著者Chio, U.S, Rechiche, O, Bryll, A.R, Zhu, J, Feldman, J.L, Peterson, C.L, Tan, S, Armache, J.-P.
登録日2023-02-11
公開日2023-04-26
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.07 Å)
主引用文献Cryo-EM structure of the human Sirtuin 6-nucleosome complex.
Sci Adv, 9, 2023
6PWF
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BU of 6pwf by Molmil
Cryo-EM structure of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome
分子名称: DNA (147-MER), Histone H2A, Histone H2B, ...
著者Chittori, S, Subramaniam, S.
登録日2019-07-22
公開日2019-08-21
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (4.07 Å)
主引用文献Structure of the primed state of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome.
Nucleic Acids Res., 47, 2019
6PWE
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BU of 6pwe by Molmil
Cryo-EM structure of nucleosome core particle
分子名称: DNA (147-MER), Histone H2A, Histone H2B, ...
著者Chittori, S, Subramaniam, S.
登録日2019-07-22
公開日2019-08-21
最終更新日2024-03-20
実験手法ELECTRON MICROSCOPY (3.95 Å)
主引用文献Structure of the primed state of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome.
Nucleic Acids Res., 47, 2019
9GD1
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Structure of Chd1 bound to a hexasome-nucleosome complex with a dyad-to-dyad distance of 103 bp.
分子名称: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, Chromo domain-containing protein 1, ...
著者Engeholm, M, Roske, J.J, Oberbeckmann, E, Dienemann, C, Lidschreiber, M, Cramer, P, Farnung, L.
登録日2024-08-04
公開日2024-09-18
最終更新日2024-10-02
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Resolution of transcription-induced hexasome-nucleosome complexes by Chd1 and FACT.
Mol.Cell, 84, 2024
6TDA
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BU of 6tda by Molmil
Structure of SWI/SNF chromatin remodeler RSC bound to a nucleosome
分子名称: Actin-like protein ARP9, Actin-related protein 7, Chromatin structure-remodeling complex protein RSC58, ...
著者Wagner, F.R, Dienemann, C, Wang, H, Stuetzer, A, Tegunov, D, Urlaub, H, Cramer, P.
登録日2019-11-08
公開日2020-03-18
最終更新日2024-11-13
実験手法ELECTRON MICROSCOPY (15 Å)
主引用文献Structure of SWI/SNF chromatin remodeller RSC bound to a nucleosome.
Nature, 579, 2020

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件を2025-07-16に公開中

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