PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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7U6K	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*G)-3'), MAGNESIUM ION, ... 著者 Ward, A.R, Snow, C.D. 登録日 2022-03-04 公開日 2023-03-29 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.38 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
5VVR	Ternary complex of RNA Pol II, transcription scaffold and Rad26 分子名称: DNA (NTS), DNA (TS), DNA repair and recombination protein RAD26, ... 著者 Lahiri, I, Leschziner, A.E. 登録日 2017-05-19 公開日 2017-11-22 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Structural basis for the initiation of eukaryotic transcription-coupled DNA repair. Nature, 551, 2017
4RKH	Structure of the MSL2 CXC domain bound with a specific MRE sequence 分子名称: DNA (5'-D(*AP*TP*CP*CP*AP*TP*CP*TP*CP*GP*CP*TP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*GP*AP*GP*CP*GP*AP*GP*AP*TP*GP*GP*AP*T)-3'), E3 ubiquitin-protein ligase msl-2, ... 著者 Zheng, S, Ye, K. 登録日 2014-10-13 公開日 2015-01-21 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation. Genes Dev., 28, 2014
4U7B	Crystal structure of a pre-cleavage Mos1 transpososome 分子名称: DNA (25-MER), DNA (31-MER), Mariner Mos1 transposase, ... 著者 Richardson, J.M. 登録日 2014-07-30 公開日 2015-02-11 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.09 Å) 主引用文献 Structural role of the flanking DNA in mariner transposon excision. Nucleic Acids Res., 43, 2015
5VVS	RNA pol II elongation complex 分子名称: DNA (NTS), DNA (TS), DNA-directed RNA polymerase II subunit RPB1, ... 著者 Lahiri, I, Leschziner, A.E. 登録日 2017-05-20 公開日 2017-11-22 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (6.4 Å) 主引用文献 Structural basis for the initiation of eukaryotic transcription-coupled DNA repair. Nature, 551, 2017
8BOT	Cryo-EM structure of NHEJ supercomplex(trimer) 分子名称: DNA (24-MER), DNA (27-MER), DNA (28-MER), ... 著者 Hardwick, S.W, Chaplin, A.K. 登録日 2022-11-15 公開日 2023-06-28 最終更新日 2023-08-16 実験手法 ELECTRON MICROSCOPY (7.76 Å) 主引用文献 Cryo-EM structure of a DNA-PK trimer: higher order oligomerisation in NHEJ. Structure, 31, 2023
1SFO	RNA POLYMERASE II STRAND SEPARATED ELONGATION COMPLEX 分子名称: DNA STRAND, DNA-directed RNA polymerase II 13.6 kDa polypeptide, DNA-directed RNA polymerase II 14.2 kDa polypeptide, ... 著者 Westover, K.D, Bushnell, D.A, Kornberg, R.D. 登録日 2004-02-20 公開日 2004-03-02 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (3.61 Å) 主引用文献 Structural Basis of Transcription: Separation of RNA from DNA by RNA Polymerase II Science, 303, 2004
7NV0	Human Pol Kappa holoenzyme with wt PCNA 分子名称: DNA Primer, DNA Template, DNA polymerase kappa, ... 著者 Lancey, C, De Biasio, A, Hamdan, S.M. 登録日 2021-03-15 公開日 2021-11-10 最終更新日 2024-07-10 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Cryo-EM structure of human Pol kappa bound to DNA and mono-ubiquitylated PCNA. Nat Commun, 12, 2021
7QHS	S. cerevisiae CMGE nucleating origin DNA melting 分子名称: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cell division control protein 45, ... 著者 Lewis, J.S, Sousa, J.S, Costa, A. 登録日 2021-12-14 公開日 2022-06-15 最終更新日 2024-07-17 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Mechanism of replication origin melting nucleated by CMG helicase assembly. Nature, 606, 2022
2WTY	Crystal structure of the homodimeric MafB in complex with the T-MARE binding site 分子名称: DNA (5'-D(*TP*AP*AP*TP*TP*GP*CP*TP*GP*AP*CP*TP*CP*AP *GP*CP*AP*AP*AP*T)-3'), DNA (5'-D(*TP*AP*TP*TP*TP*GP*CP*TP*GP*AP*GP*TP*CP*AP *GP*CP*AP*AP*TP*T)-3'), MAGNESIUM ION, ... 著者 Consani Textor, L, Holton, S, Wilmanns, M. 登録日 2009-09-25 公開日 2010-12-08 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Design of a bZIP Transcription Factor with Homo/Heterodimer-Induced DNA-Binding Preference. Structure, 22, 2014
8HIG	Co-crystal structure of C-terminal DNA binding domain of Saccharopolyspora erythraea GlnR in complex with its cognate promoter DNA 分子名称: DNA (5'-D(*AP*CP*GP*TP*AP*AP*CP*AP*TP*CP*GP*CP*GP*GP*TP*AP*AP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*TP*TP*AP*CP*CP*GP*CP*GP*AP*TP*GP*TP*TP*AP*CP*GP*T)-3'), DNA-binding response OmpR family regulator 著者 Lin, W, Xu, J.C, Zhang, Y. 登録日 2022-11-20 公開日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.329 Å) 主引用文献 Co-crystal structure of C-terminal DNA binding domain of Saccharopolyspora erythraea GlnR in complex with its cognate promoter DNA To Be Published
3IV5	Crystal structure of Fis bound to 27 bp optimal binding sequence F1 分子名称: DNA (27-MER), DNA-binding protein fis 著者 Stella, S, Cascio, D, Johnson, R.C. 登録日 2009-08-31 公開日 2010-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010
3JR9	Crystal structure of Fis bound to 27 bp optimal binding sequence F2 分子名称: DNA (27-MER), DNA-binding protein fis 著者 Stella, S, Cascio, D, Johnson, R.C. 登録日 2009-09-08 公開日 2010-04-28 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 The shape of the DNA minor groove directs binding by the DNA-bending protein Fis. Genes Dev., 24, 2010
6N1R	Tetrahedral oligomeric complex of GyrA N-terminal fragment, solved by cryoEM in tetrahedral symmetry 分子名称: DNA gyrase subunit A 著者 Soczek, K.M, Grant, T, Rosenthal, P.B, Mondragon, A. 登録日 2018-11-10 公開日 2018-12-05 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 CryoEM structures of open dimers of Gyrase A in complex with DNA illuminate mechanism of strand passage. Elife, 7, 2018
6N1Q	Dihedral oligomeric complex of GyrA N-terminal fragment, solved by cryoEM in D2 symmetry 分子名称: DNA gyrase subunit A 著者 Soczek, K.M, Grant, T, Rosenthal, P.B, Mondragon, A. 登録日 2018-11-10 公開日 2018-12-05 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (5.16 Å) 主引用文献 CryoEM structures of open dimers of Gyrase A in complex with DNA illuminate mechanism of strand passage. Elife, 7, 2018
8D86	Isoreticular, interpenetrating co-crystal of Replication Initiator Protein REPE54 and symmetrical expanded duplex (31mer) containing the cognate REPE54 sequence and an additional G-C rich sequence co-crystallized with a guest small molecule, netropsin. 分子名称: DNA (5'-D(A*CP*CP*CP*GP*GP*AP*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*AP*CP*GP*G)-3'), DNA (5'-D(A*GP*GP*CP*CP*GP*TP*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*TP*CP*CP*G)-3'), MAGNESIUM ION, ... 著者 Orun, A.R, Snow, C.D. 登録日 2022-06-07 公開日 2023-06-28 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.12 Å) 主引用文献 Modular Protein-DNA Cocrystals as Precise, Programmable Assembly Scaffolds. Acs Nano, 17, 2023
7U50	APE1 bound to a nucleosome core particle with AP-site at SHL-6 分子名称: DNA (144-MER), DNA (145-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ... 著者 Weaver, T.M, Freudenthal, B.D. 登録日 2022-03-01 公開日 2022-09-07 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural basis for APE1 processing DNA damage in the nucleosome. Nat Commun, 13, 2022
9BH8	Human DNA polymerase theta helicase domain dimer bound to DNA in the microhomology searching conformation 分子名称: DNA polymerase theta, Stem-loop DNA with microhomology in the 3' overhang 著者 Zerio, C.J, Lander, G.C. 登録日 2024-04-19 公開日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Human polymerase theta helicase positions DNA microhomologies for double-strand break repair To Be Published
3A2F	Crystal Structure of Pyrococcus furiosus DNA polymerase/PCNA monomer mutant complex 分子名称: DNA polymerase, DNA polymerase sliding clamp 著者 Nishida, H, Ishino, Y, Morikawa, K. 登録日 2009-05-15 公開日 2009-11-03 最終更新日 2021-11-10 実験手法 X-RAY DIFFRACTION (2.67 Å) 主引用文献 Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex To be Published
7SPM	Replication Initiator Protein REPE54 and cognate DNA sequence with terminal three prime phosphates chemically crosslinked (30 mg/mL EDC, 12 hours, 2 doses). 分子名称: DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*A)-3'), MAGNESIUM ION, ... 著者 Ward, A.R, Snow, C.D. 登録日 2021-11-02 公開日 2021-11-10 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.28 Å) 主引用文献 Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA Crystals, 12, 2022
1YSE	Solution structure of the MAR-binding domain of SATB1 分子名称: DNA-binding protein SATB1 著者 Yamasaki, K, Yamaguchi, H. 登録日 2005-02-08 公開日 2006-01-03 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution Structure and DNA-binding Mode of the Matrix Attachment Region-binding Domain of the Transcription Factor SATB1 That Regulates the T-cell Maturation J.Biol.Chem., 281, 2006
4HF2	Crystal Structure of E43A IscR mutant bound to its promoter 分子名称: DNA (29-MER), HTH-type transcriptional regulator IscR 著者 Rajagopalan, S.R, Phillips, K.J. 登録日 2012-10-04 公開日 2013-05-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.99 Å) 主引用文献 Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity. Nat.Struct.Mol.Biol., 20, 2013
4HF1	Crystal Structure of IscR bound to its promoter 分子名称: DNA (29-MER), HTH-type transcriptional regulator IscR 著者 Rajagopalan, S.R, Phillips, K.J. 登録日 2012-10-04 公開日 2013-05-08 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.222 Å) 主引用文献 Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity. Nat.Struct.Mol.Biol., 20, 2013
6XN9	Solution NMR structure of recifin, a cysteine-rich tyrosyl-DNA Phosphodiesterase I modulatory peptide from the marine sponge Axinella sp. 分子名称: Recifin modulatory peptide 著者 Schroeder, C.I, Rosengren, K.J, O'Keefe, B.R. 登録日 2020-07-02 公開日 2021-02-10 実験手法 SOLUTION NMR 主引用文献 Recifin A, Initial Example of the Tyr-Lock Peptide Structural Family, Is a Selective Allosteric Inhibitor of Tyrosyl-DNA Phosphodiesterase I. J.Am.Chem.Soc., 142, 2020
6LZJ	Aquifex aeolicus MutL ATPase domain complexed with AMPPCP 分子名称: DNA mismatch repair protein MutL, MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER 著者 Fukui, K, Izuhara, K, Yano, T. 登録日 2020-02-19 公開日 2020-07-01 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (1.72835565 Å) 主引用文献 A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL. J.Biol.Chem., 295, 2020

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