Ternary complex of RNA Pol II, transcription scaffold and Rad26

Summary for 5VVR

EMDB information8735 8736 8737
DescriptorDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB2, DNA-directed RNA polymerase II subunit RPB3, ... (18 entities in total)
Functional Keywordscomplex, rna polymerase, csb, transcription, transcription-rna-dna complex, transcription/rna/dna
Biological sourceSaccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
Cellular locationNucleus P04050 P08518 P16370 P20433 P20434 P34087 P20436 P38902 P40352
Cytoplasm  P20435
Nucleus, nucleolus  P27999 P22139 P40422
Total number of polymer chains16
Total molecular weight671443.85
Lahiri, I.,Leschziner, A.E. (deposition date: 2017-05-19, release date: 2017-11-22, Last modification date: 2017-12-13)
Primary citation
Xu, J.,Lahiri, I.,Wang, W.,Wier, A.,Cianfrocco, M.A.,Chong, J.,Hare, A.A.,Dervan, P.B.,DiMaio, F.,Leschziner, A.E.,Wang, D.
Structural basis for the initiation of eukaryotic transcription-coupled DNA repair.
Nature, 551:653-657, 2017
PubMed: 29168508 (PDB entries with the same primary citation)
DOI: 10.1038/nature24658
MImport into Mendeley
Experimental method

Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone41.8%0.1%0.40MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures