PDB: 1507 件ウェブページステータス検索Chemie searchBIRD

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4K1R	Crystal structure of Schizosaccharomyces pombe sst2 catalytic domain and Ubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, CHLORIDE ION, ... 著者 Shrestha, R.K, Das, C. 登録日 2013-04-05 公開日 2014-04-23 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.632 Å) 主引用文献 Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry, 53, 2014
4M0W	Crystal Structure of SARS-CoV papain-like protease C112S mutant in complex with ubiquitin 分子名称: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, GLYCEROL, Replicase polyprotein 1a, ... 著者 Chou, C.-Y, Chen, H.-Y, Lai, H.-Y, Cheng, S.-C, Chou, Y.-W. 登録日 2013-08-02 公開日 2014-02-12 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (1.4 Å) 主引用文献 Structural basis for catalysis and ubiquitin recognition by the severe acute respiratory syndrome coronavirus papain-like protease Acta Crystallogr.,Sect.D, 70, 2014
4LJO	Structure of an active ligase (HOIP)/ubiquitin transfer complex 分子名称: E3 ubiquitin-protein ligase RNF31, IMIDAZOLE, Polyubiquitin-C, ... 著者 Rana, R.R, Stieglitz, B, Koliopoulos, M.G, Morris-Davies, A.C, Christodoulou, E, Howell, S, Brown, N.R, Rittinger, K. 登録日 2013-07-05 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.564 Å) 主引用文献 Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. Nature, 503, 2013
4LCD	Structure of an Rsp5xUbxSna3 complex: Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3 分子名称: E3 ubiquitin-protein ligase RSP5, Protein SNA3, Ubiquitin 著者 Kamadurai, H.B, Miller, D, Schulman, B.A. 登録日 2013-06-21 公開日 2013-08-14 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Mechanism of ubiquitin ligation and lysine prioritization by a HECT E3. Elife, 2, 2013
4JIO	Bro1 V domain and ubiquitin 分子名称: BRO1, Ubiquitin 著者 Pashkova, N, Gakhar, L, Piper, R.C. 登録日 2013-03-06 公開日 2013-06-19 最終更新日 2013-07-10 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 The yeast alix homolog bro1 functions as a ubiquitin receptor for protein sorting into multivesicular endosomes. Dev.Cell, 25, 2013
4LJP	Structure of an active ligase (HOIP-H889A)/ubiquitin transfer complex 分子名称: E3 ubiquitin-protein ligase RNF31, Polyubiquitin-C, ZINC ION 著者 Rana, R.R, Stieglitz, B, Koliopoulos, M.G, Morris-Davies, A.C, Christodoulou, E, Howell, S, Brown, N.R, Rittinger, K. 登録日 2013-07-05 公開日 2013-10-16 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for ligase-specific conjugation of linear ubiquitin chains by HOIP. Nature, 503, 2013
4MSQ	Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 catalytic domain bound to ubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, PHOSPHATE ION, ... 著者 Shrestha, R.K, Ronau, J.A, Das, C. 登録日 2013-09-18 公開日 2014-06-18 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.952 Å) 主引用文献 Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry, 53, 2014
4N9F	Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex 分子名称: Core-binding factor subunit beta, Cullin-5, Transcription elongation factor B polypeptide 1, ... 著者 Guo, Y.Y, Dong, L.Y, Huang, Z.W. 登録日 2013-10-21 公開日 2014-01-08 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Structural basis for hijacking CBF-b and CUL5 E3 ligase complex by HIV-1 Vif Nature, 505, 2014
4NQK	Structure of an Ubiquitin complex 分子名称: Probable ATP-dependent RNA helicase DDX58, Ubiquitin 著者 Peisley, A, Wu, B, Hur, S. 登録日 2013-11-25 公開日 2014-03-05 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (3.7 Å) 主引用文献 Structural basis for ubiquitin-mediated antiviral signal activation by RIG-I. Nature, 509, 2014
4NNJ	Crystal structure of Uba1 in complex with ubiquitin-AMP and thioesterified ubiquitin 分子名称: ADENOSINE MONOPHOSPHATE, GLYCEROL, SULFATE ION, ... 著者 Schaefer, A, Schindelin, H. 登録日 2013-11-18 公開日 2014-05-07 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 Structure of the ubiquitin-activating enzyme loaded with two ubiquitin molecules. Acta Crystallogr.,Sect.D, 70, 2014
4MSM	Crystal structure of Schizosaccharomyces pombe AMSH-like protease sst2 E286A mutant bound to ubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, PHOSPHATE ION, ... 著者 Shrestha, R.K, Ronau, J.A, Das, C. 登録日 2013-09-18 公開日 2014-06-18 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.74 Å) 主引用文献 Insights into the Mechanism of Deubiquitination by JAMM Deubiquitinases from Cocrystal Structures of the Enzyme with the Substrate and Product. Biochemistry, 53, 2014
4KSK	Gumby/Fam105B in complex with ubiquitin 分子名称: Polyubiquitin-C, Protein FAM105B, SULFATE ION 著者 Ceccarelli, D.F, Juang, Y.-C, Sicheri, F. 登録日 2013-05-17 公開日 2013-06-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.4 Å) 主引用文献 The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature, 498, 2013
4KSL	Gumby/Fam105B in complex with linear di-ubiquitin 分子名称: Polyubiquitin-C, Protein FAM105B 著者 Juang, Y.-C, Ceccarelli, D.F, Sicheri, F. 登録日 2013-05-17 公開日 2013-06-05 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.83 Å) 主引用文献 The linear ubiquitin-specific deubiquitinase gumby regulates angiogenesis. Nature, 498, 2013
4K95	Crystal Structure of Parkin 分子名称: E3 ubiquitin-protein ligase parkin, ZINC ION 著者 Seirafi, M, Menade, M, Sauve, V, Kozlov, G, Trempe, J.-F, Nagar, B, Gehring, K. 登録日 2013-04-19 公開日 2013-05-15 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (6.499 Å) 主引用文献 Structure of parkin reveals mechanisms for ubiquitin ligase activation. Science, 340, 2013
4MM3	Crystal structure of SARS-CoV papain-like protease PLpro in complex with ubiquitin aldehyde 分子名称: Papain-like proteinase, Ubiquitin, ZINC ION 著者 Mesecar, A.D, Ratia, K. 登録日 2013-09-08 公開日 2014-07-02 最終更新日 2017-11-15 実験手法 X-RAY DIFFRACTION (2.752 Å) 主引用文献 Structural Basis for the Ubiquitin-Linkage Specificity and deISGylating activity of SARS-CoV papain-like protease. Plos Pathog., 10, 2014
4NQL	The crystal structure of the DUB domain of AMSH orthologue, Sst2 from S. pombe, in complex with lysine 63-linked diubiquitin 分子名称: 1,2-ETHANEDIOL, AMSH-like protease sst2, Ubiquitin, ... 著者 Ronau, J.A, Shrestha, R.K, Das, C. 登録日 2013-11-25 公開日 2014-10-08 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Insights into the mechanism of deubiquitination by JAMM deubiquitinases from cocrystal structures of the enzyme with the substrate and product. Biochemistry, 53, 2014
1WR6	Crystal structure of GGA3 GAT domain in complex with ubiquitin 分子名称: ADP-ribosylation factor binding protein GGA3, ubiquitin 著者 Kawasaki, M, Shiba, T, Shiba, Y, Yamaguchi, Y, Matsugaki, N, Igarashi, N, Suzuki, M, Kato, R, Kato, K, Nakayama, K, Wakatsuki, S. 登録日 2004-10-12 公開日 2005-06-28 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 Molecular mechanism of ubiquitin recognition by GGA3 GAT domain. Genes Cells, 10, 2005
1WRD	Crystal structure of Tom1 GAT domain in complex with ubiquitin 分子名称: Target of Myb protein 1, Ubiquitin 著者 Akutsu, M, Kawasaki, M, Katoh, Y, Shiba, T, Yamaguchi, Y, Kato, R, Kato, K, Nakayama, K, Wakatsuki, S. 登録日 2004-10-14 公開日 2005-10-11 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.75 Å) 主引用文献 Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain. Febs Lett., 579, 2005
1XD3	Crystal structure of UCHL3-UbVME complex 分子名称: MAGNESIUM ION, METHYL 4-AMINOBUTANOATE, UBC protein, ... 著者 Misaghi, S, Galardy, P.J, Meester, W.J.N, Ovaa, H, Ploegh, H.L, Gaudet, R. 登録日 2004-09-03 公開日 2004-11-23 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Structure of the Ubiquitin Hydrolase UCH-L3 Complexed with a Suicide Substrate J.Biol.Chem., 280, 2005
1YX5	Solution Structure of S5a UIM-1/Ubiquitin Complex 分子名称: 26S proteasome non-ATPase regulatory subunit 4, Ubiquitin 著者 Wang, Q, Young, P, Walters, K.J. 登録日 2005-02-19 公開日 2005-04-19 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of S5a Bound to Monoubiquitin Provides a Model for Polyubiquitin Recognition J.Mol.Biol., 348, 2005
1YX6	Solution Structure of S5a UIM-2/Ubiquitin Complex 分子名称: 26S proteasome non-ATPase regulatory subunit 4, Ubiquitin 著者 Wang, Q, Young, P, Walters, K.J. 登録日 2005-02-19 公開日 2005-04-19 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Structure of S5a Bound to Monoubiquitin Provides a Model for Polyubiquitin Recognition J.Mol.Biol., 348, 2005
1XT9	Crystal Structure of Den1 in complex with Nedd8 分子名称: Neddylin, Sentrin-specific protease 8 著者 Reverter, D, Wu, K, Erdene, T.G, Pan, Z.Q, Wilkinson, K.D, Lima, C.D. 登録日 2004-10-21 公開日 2004-12-21 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of a Complex between Nedd8 and the Ulp/Senp Protease Family Member Den1. J.Mol.Biol., 345, 2005
1YD8	COMPLEX OF HUMAN GGA3 GAT DOMAIN AND UBIQUITIN 分子名称: ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA3, UBIQUIN 著者 Prag, G, Lee, S, Mattera, R, Arighi, C.N, Beach, B.M, Bonifacino, J.S, Hurley, J.H. 登録日 2004-12-23 公開日 2005-02-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural mechanism for ubiquitinated-cargo recognition by the Golgi-localized, {gamma}-ear-containing, ADP-ribosylation-factor-binding proteins Proc.Natl.Acad.Sci.USA, 102, 2005
7MC9	X-RAY STRUCTURE OF PEDV PAPAIN-LIKE PROTEASE 2 bound to UB-PA 分子名称: 3C-like proteinase, Ubiquitin, ZINC ION, ... 著者 Durie, I.A, Dzimianski, J.V, Daczkowski, C.M, Pegan, S.D. 登録日 2021-04-01 公開日 2021-07-07 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.099 Å) 主引用文献 Structural insights into the interaction of papain-like protease 2 from the alphacoronavirus porcine epidemic diarrhea virus and ubiquitin Acta Cryst. D, 77, 2021
7MIC	Maize rayado fino virus protease in complex with Ubiquitin 分子名称: 3-AMINOPROPANE, GLYCEROL, RNA replication protein, ... 著者 Patel, A, Mark, B.L. 登録日 2021-04-16 公開日 2021-07-21 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (2.09 Å) 主引用文献 The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase. J.Biol.Chem., 297, 2021

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