PDB: 597 件ウェブページステータス検索Chemie searchBIRD

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7R7A	State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model 分子名称: 25S rRNA, 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ... 著者 Cruz, V.E, Sekulski, K, Peddada, N, Erzberger, J.P. 登録日 2021-06-24 公開日 2022-11-09 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.04 Å) 主引用文献 Sequence-specific remodeling of a topologically complex RNP substrate by Spb4. Nat.Struct.Mol.Biol., 29, 2022
7V2Y	cryo-EM structure of yeast THO complex with Sub2 分子名称: ATP-dependent RNA helicase SUB2, Protein TEX1, THO complex subunit 2, ... 著者 Chen, C, Tan, M, Wu, Z, Wu, J, Lei, M. 登録日 2021-08-10 公開日 2022-07-27 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 Structural and functional insights into R-loop prevention and mRNA export by budding yeast THO-Sub2 complex. Sci Bull (Beijing), 66, 2021
7V6B	Structure of the Dicer-2-R2D2 heterodimer 分子名称: Dicer-2, isoform A, R2D2 著者 Yamaguchi, S, Nishizawa, T, Kusakizako, T, Yamashita, K, Tomita, A, Hirano, H, Nishimasu, H, Nureki, O. 登録日 2021-08-20 公開日 2022-03-23 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of the Dicer-2-R2D2 heterodimer bound to a small RNA duplex. Nature, 607, 2022
7V6C	Structure of the Dicer-2-R2D2 heterodimer bound to small RNA duplex 分子名称: Dicer-2, isoform A, R2D2, ... 著者 Yamaguchi, S, Nishizawa, T, Kusakizako, T, Yamashita, K, Tomita, A, Hirano, H, Nishimasu, H, Nureki, O. 登録日 2021-08-20 公開日 2022-03-23 最終更新日 2024-06-12 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Structure of the Dicer-2-R2D2 heterodimer bound to a small RNA duplex. Nature, 607, 2022
7PLI	DEAD-box helicase DbpA bound to single stranded RNA and ADP/BeF3 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ... 著者 Wurm, J.P. 登録日 2021-08-31 公開日 2022-09-07 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA. Rna, 29, 2023
7PMQ	DEAD-box helicase DbpA in the active conformation bound to a hairpin loop RNA and ADP/BeF3 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ... 著者 Wurm, J.P. 登録日 2021-09-02 公開日 2022-09-14 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3.22 Å) 主引用文献 Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA. Rna, 29, 2023
7PMM	DEAD-box helicase DbpA in the active conformation bound to a ss/dsRNA junction and ADP/BeF3 分子名称: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent RNA helicase DbpA, BERYLLIUM TRIFLUORIDE ION, ... 著者 Wurm, J.P. 登録日 2021-09-02 公開日 2022-09-14 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for RNA-duplex unwinding by the DEAD-box helicase DbpA. Rna, 29, 2023
7VG2	Cryo-EM structure of Arabidopsis DCL3 in complex with a 40-bp RNA 分子名称: CALCIUM ION, Dicer-like 3, TAS1a forward strand (5'-phosphorylation), ... 著者 Wang, Q, Du, J. 登録日 2021-09-14 公開日 2021-10-27 最終更新日 2021-12-15 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science, 374, 2021
7VG3	Cryo-EM structure of Arabidopsis DCL3 in complex with a 30-bp RNA 分子名称: CALCIUM ION, Dicer-like 3, TAS1a RNA forward strand (5'-phosphorylated), ... 著者 Wang, Q, Du, J. 登録日 2021-09-14 公開日 2021-10-27 最終更新日 2021-12-15 実験手法 ELECTRON MICROSCOPY (3.73 Å) 主引用文献 Mechanism of siRNA production by a plant Dicer-RNA complex in dicing-competent conformation. Science, 374, 2021
7PQ0	Crystal structure of the Burkholderia Lethal Factor 1 (BLF1) C94S inactive mutant in complex with human eIF4A - Crystal form B 分子名称: Burkholderia Lethal Factor 1 (BLF1), Eukaryotic initiation factor 4A-I 著者 Mobbs, G.W, Aziz, A.A, Dix, S.R, Blackburn, G.M, Sedelnikova, S.E, Minshull, T.C, Dickman, M.J, Baker, P.J, Nathan, S, Firdaus-Raih, M, Rice, D.W. 登録日 2021-09-15 公開日 2022-04-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Molecular basis of specificity and deamidation of eIF4A by Burkholderia Lethal Factor 1. Commun Biol, 5, 2022
7PPZ	Crystal structure of the Burkholderia Lethal Factor 1 (BLF1) C94S inactive mutant in complex with human eIF4A - Crystal form A 分子名称: Burkholderia Lethal Factor 1 (BLF1), Eukaryotic initiation factor 4A-I 著者 Mobbs, G.W, Aziz, A.A, Dix, S.R, Blackburn, G.M, Sedelnikova, S.E, Minshull, T.C, Dickman, M.J, Baker, P.J, Nathan, S, Firdaus-Raih, M, Rice, D.W. 登録日 2021-09-15 公開日 2022-04-13 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.52 Å) 主引用文献 Molecular basis of specificity and deamidation of eIF4A by Burkholderia Lethal Factor 1. Commun Biol, 5, 2022
7S7B	Human Nuclear exosome targeting (NEXT) complex homodimer bound to RNA (substrate 1) 分子名称: Exosome RNA helicase MTR4, RNA (46-MER), RNA-binding protein 7, ... 著者 Puno, M.R, Lima, C.D. 登録日 2021-09-15 公開日 2022-06-15 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (4.06 Å) 主引用文献 Structural basis for RNA surveillance by the human nuclear exosome targeting (NEXT) complex. Cell, 185, 2022
7S7C	Human Nuclear Exosome Targeting (NEXT) complex bound to RNA (substrate 2) 分子名称: Exosome RNA helicase MTR4, RNA (30-MER), RNA-binding protein 7, ... 著者 Puno, M.R, Lima, C.D. 登録日 2021-09-15 公開日 2022-06-15 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (3.62 Å) 主引用文献 Structural basis for RNA surveillance by the human nuclear exosome targeting (NEXT) complex. Cell, 185, 2022
7PX3	Structure of U5 snRNP assembly and recycling factor TSSC4 in complex with BRR2 and Jab1 domain of PRPF8 分子名称: Pre-mRNA-processing-splicing factor 8, Protein TSSC4, U5 small nuclear ribonucleoprotein 200 kDa helicase 著者 Bergfort, A, Kuropka, B, Ilik, I.A, Freund, C, Aktas, T, Hilal, T, Weber, G, Wahl, M.C. 登録日 2021-10-07 公開日 2022-01-26 最終更新日 2022-08-10 実験手法 ELECTRON MICROSCOPY (3.05 Å) 主引用文献 The intrinsically disordered TSSC4 protein acts as a helicase inhibitor, placeholder and multi-interaction coordinator during snRNP assembly and recycling. Nucleic Acids Res., 50, 2022
7VPX	The cryo-EM structure of the human pre-A complex 分子名称: 5SS, DnaJ homolog subfamily C member 8, PHD finger-like domain-containing protein 5A, ... 著者 Zhang, X, Zhan, X, Shi, Y. 登録日 2021-10-18 公開日 2023-05-03 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural insights into branch site proofreading by human spliceosome. Nat.Struct.Mol.Biol., 2024
7Q3L	Human 17S U2 snRNP 5' domain 分子名称: HIV Tat-specific factor 1, PHD finger-like domain-containing protein 5A, Probable ATP-dependent RNA helicase DDX46, ... 著者 Tholen, J, Galej, W.P. 登録日 2021-10-28 公開日 2022-03-30 実験手法 ELECTRON MICROSCOPY (2.3 Å) 主引用文献 Structural basis of branch site recognition by the human spliceosome. Science, 375, 2022
7SSG	Mfd DNA complex 分子名称: DNA (5'-D(P*TP*GP*GP*CP*GP*GP*CP*GP*AP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*GP*CP*CP*TP*CP*GP*CP*TP*GP*CP*CP*A)-3'), Transcription-repair-coupling factor 著者 Oakley, A.J, Xu, Z.-Q. 登録日 2021-11-11 公開日 2022-05-25 最終更新日 2024-06-05 実験手法 ELECTRON MICROSCOPY (5.2 Å) 主引用文献 Mechanism of transcription modulation by the transcription-repair coupling factor. Nucleic Acids Res., 50, 2022
7W0B	Dicer2-LoqsPD complex at apo status 分子名称: Dicer-2, isoform A, Loquacious, ... 著者 Su, S, Wang, J, Wang, H.W, Ma, J. 登録日 2021-11-18 公開日 2022-04-27 最終更新日 2022-07-27 実験手法 ELECTRON MICROSCOPY (3.33 Å) 主引用文献 Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature, 607, 2022
7W0E	dmDicer2-LoqsPD-dsRNA Active-dicing status 分子名称: ADENOSINE-5'-DIPHOSPHATE, Dicer-2, isoform A, ... 著者 Su, S, Wang, J, Wang, H.W, Ma, J. 登録日 2021-11-18 公開日 2022-04-27 最終更新日 2022-07-27 実験手法 ELECTRON MICROSCOPY (4.03 Å) 主引用文献 Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature, 607, 2022
7W0D	Dicer2-LoqsPD-dsRNA complex at mid-translocation state 分子名称: ADENOSINE-5'-DIPHOSPHATE, Dicer-2, isoform A, ... 著者 Su, S, Wang, J, Wang, H.W, Ma, J. 登録日 2021-11-18 公開日 2022-04-27 最終更新日 2022-07-27 実験手法 ELECTRON MICROSCOPY (4.18 Å) 主引用文献 Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature, 607, 2022
7W0F	dmDicer2-LoqsPD-dsRNA Post-dicing status 分子名称: Dicer-2, isoform A, Loquacious, ... 著者 Su, S, Wang, J, Wang, H.W, Ma, J. 登録日 2021-11-18 公開日 2022-04-27 最終更新日 2022-07-27 実験手法 ELECTRON MICROSCOPY (4.55 Å) 主引用文献 Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature, 607, 2022
7W0A	dmDicer2-LoqsPD-dsRNA Dimer status 分子名称: Dicer-2, isoform A, Loquacious, ... 著者 Su, S, Wang, J, Wang, H.W, Ma, J. 登録日 2021-11-18 公開日 2022-04-27 最終更新日 2022-07-27 実験手法 ELECTRON MICROSCOPY (3.12 Å) 主引用文献 Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature, 607, 2022
7W0C	Dicer2-Loqs-PD-dsRNA complex at early-translocation state 分子名称: ADENOSINE-5'-DIPHOSPHATE, Dicer-2, isoform A, ... 著者 Su, S, Wang, J, Wang, H.W, Ma, J. 登録日 2021-11-18 公開日 2022-04-27 最終更新日 2022-07-27 実験手法 ELECTRON MICROSCOPY (3.93 Å) 主引用文献 Structural insights into dsRNA processing by Drosophila Dicer-2-Loqs-PD. Nature, 607, 2022
7QDR	Apo human SKI complex in the closed state 分子名称: Helicase SKI2W, Tetratricopeptide repeat protein 37, WD repeat-containing protein 61 著者 Koegel, A, Keidel, A, Bonneau, F, Schaefer, I.B, Conti, E. 登録日 2021-11-29 公開日 2022-02-02 最終更新日 2022-03-02 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 The human SKI complex regulates channeling of ribosome-bound RNA to the exosome via an intrinsic gatekeeping mechanism. Mol.Cell, 82, 2022
7W59	The cryo-EM structure of human pre-C*-I complex 分子名称: 116 kDa U5 small nuclear ribonucleoprotein component, ADENOSINE-5'-TRIPHOSPHATE, ATP-dependent RNA helicase DHX8, ... 著者 Zhan, X, Lu, Y, Shi, Y. 登録日 2021-11-29 公開日 2022-06-22 最終更新日 2022-08-17 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Mechanism of exon ligation by human spliceosome. Mol.Cell, 82, 2022

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