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PDB: 13 results

7V6C
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BU of 7v6c by Molmil
Structure of the Dicer-2-R2D2 heterodimer bound to small RNA duplex
Descriptor: Dicer-2, isoform A, R2D2, ...
Authors:Yamaguchi, S, Nishizawa, T, Kusakizako, T, Yamashita, K, Tomita, A, Hirano, H, Nishimasu, H, Nureki, O.
Deposit date:2021-08-20
Release date:2022-03-23
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of the Dicer-2-R2D2 heterodimer bound to a small RNA duplex.
Nature, 607, 2022
7V6B
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Structure of the Dicer-2-R2D2 heterodimer
Descriptor: Dicer-2, isoform A, R2D2
Authors:Yamaguchi, S, Nishizawa, T, Kusakizako, T, Yamashita, K, Tomita, A, Hirano, H, Nishimasu, H, Nureki, O.
Deposit date:2021-08-20
Release date:2022-03-23
Last modified:2022-07-27
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structure of the Dicer-2-R2D2 heterodimer bound to a small RNA duplex.
Nature, 607, 2022
2ZOH
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BU of 2zoh by Molmil
X-ray Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Yamaguchi, S.
Deposit date:2008-05-20
Release date:2009-03-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009
6KR6
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BU of 6kr6 by Molmil
Crystal structure of Drosophila Piwi
Descriptor: MERCURY (II) ION, Protein piwi, ZINC ION, ...
Authors:Yamaguchi, S, Oe, A, Yamashita, K, Hirano, S, Mastumoto, N, Ishitani, R, Nishimasu, H, Nureki, O.
Deposit date:2019-08-21
Release date:2020-02-19
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystal structure of Drosophila Piwi.
Nat Commun, 11, 2020
2ZOI
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BU of 2zoi by Molmil
Neutron Crystal Structure of Photoactive Yellow Protein, Wild type, at 295K
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Yamaguchi, S.
Deposit date:2008-05-21
Release date:2009-03-24
Last modified:2023-11-01
Method:NEUTRON DIFFRACTION (1.5 Å)
Cite:Low-barrier hydrogen bond in photoactive yellow protein
Proc.Natl.Acad.Sci.USA, 106, 2009
1TIA
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BU of 1tia by Molmil
AN UNUSUAL BURIED POLAR CLUSTER IN A FAMILY OF FUNGAL LIPASES
Descriptor: LIPASE
Authors:Derewenda, U, Swenson, L, Yamaguchi, S, Wei, Y, Derewenda, Z.S.
Deposit date:1993-12-06
Release date:1995-01-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An unusual buried polar cluster in a family of fungal lipases.
Nat.Struct.Biol., 1, 1994
3ABG
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BU of 3abg by Molmil
X-ray Crystal Analysis of Bilirubin Oxidase from Myrothecium verrucaria at 2.3 angstrom Resolution using a Twin Crystal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Bilirubin oxidase, COPPER (II) ION, ...
Authors:Mizutani, K, Toyoda, M, Sagara, K, Takahashi, N, Sato, A, Kamitaka, Y, Tsujimura, S, Nakanishi, Y, Sugiura, T, Yamaguchi, S, Kano, K, Mikami, B.
Deposit date:2009-12-10
Release date:2010-08-18
Last modified:2023-07-26
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 A resolution using a twinned crystal
Acta Crystallogr.,Sect.F, 66, 2010
3A56
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BU of 3a56 by Molmil
Crystal structure of pro- protein-glutaminase
Descriptor: CITRIC ACID, Protein-glutaminase
Authors:Hashizume, R, Yamaguchi, S, Mikami, B.
Deposit date:2009-07-31
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.728 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
3A55
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Crystal structure of the A47Q2 mutant of pro- protein-glutaminase
Descriptor: Protein-glutaminase
Authors:Hashizume, R, Yamaguchi, S, Mikami, B.
Deposit date:2009-07-30
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
3A54
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BU of 3a54 by Molmil
Crystal structure of the A47Q1 mutant of pro-protein-glutaminase
Descriptor: Protein-glutaminase
Authors:Hashizume, R, Yamaguchi, S, Mikami, B.
Deposit date:2009-07-30
Release date:2010-08-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.502 Å)
Cite:Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex
J.Biol.Chem., 286, 2011
3W05
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BU of 3w05 by Molmil
Crystal structure of Oryza sativa DWARF14 (D14) in complex with PMSF
Descriptor: 1,2-ETHANEDIOL, Dwarf 88 esterase, phenylmethanesulfonic acid
Authors:Kagiyama, M, Hirano, Y, Mori, T, Kim, S.Y, Kyozuka, J, Seto, Y, Yamaguchi, S, Hakoshima, T.
Deposit date:2012-10-19
Release date:2013-01-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Structures of D14 and D14L in the strigolactone and karrikin signaling pathways
Genes Cells, 18, 2013
3W04
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BU of 3w04 by Molmil
Crystal structure of Oryza sativa DWARF14 (D14)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Kagiyama, M, Hirano, Y, Mori, T, Kim, S.Y, Kyozuka, J, Seto, Y, Yamaguchi, S, Hakoshima, T.
Deposit date:2012-10-19
Release date:2013-01-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structures of D14 and D14L in the strigolactone and karrikin signaling pathways
Genes Cells, 18, 2013
3W06
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Crystal structure of Arabidopsis thaliana DWARF14 Like (AtD14L)
Descriptor: 1,2-ETHANEDIOL, Hydrolase, alpha/beta fold family protein
Authors:Kagiyama, M, Hirano, Y, Mori, T, Kim, S.Y, Kyozuka, J, Seto, Y, Yamaguchi, S, Hakoshima, T.
Deposit date:2012-10-19
Release date:2013-01-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structures of D14 and D14L in the strigolactone and karrikin signaling pathways
Genes Cells, 18, 2013

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