PDB: 1477 件ウェブページステータス検索Chemie searchBIRD

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6GSJ	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Rozov, A, Yusupov, M, Yusupova, G. 登録日 2018-06-14 公開日 2018-07-04 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.96 Å) 主引用文献 Tautomeric G•U pairs within the molecular ribosomal grip and fidelity of decoding in bacteria. Nucleic Acids Res., 46, 2018
3J77	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Svidritskiy, E, Brilot, A.F, Koh, C.S, Grigorieff, N, Korostelev, A.A. 登録日 2014-05-29 公開日 2014-08-06 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.2 Å) 主引用文献 Structures of Yeast 80S Ribosome-tRNA Complexes in the Rotated and Nonrotated Conformations. Structure, 22, 2014
3JA1	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Li, W, Liu, Z, Koripella, R.K, Langlois, R, Sanyal, S, Frank, J. 登録日 2015-03-30 公開日 2015-07-01 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G. Sci Adv, 1, 2015
6HCQ	Structure of the rabbit collided di-ribosome (collided monosome) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S. 登録日 2018-08-16 公開日 2018-10-17 最終更新日 2018-11-14 実験手法 ELECTRON MICROSCOPY (6.5 Å) 主引用文献 ZNF598 Is a Quality Control Sensor of Collided Ribosomes. Mol. Cell, 72, 2018
6HCJ	Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAs 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S. 登録日 2018-08-15 公開日 2018-10-17 最終更新日 2018-11-14 実験手法 ELECTRON MICROSCOPY (3.8 Å) 主引用文献 ZNF598 Is a Quality Control Sensor of Collided Ribosomes. Mol. Cell, 72, 2018
3J9W	Cryo-EM structure of the Bacillus subtilis MifM-stalled ribosome complex 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein bS16, ... 著者 Sohmen, D, Chiba, S, Shimokawa-Chiba, N, Innis, C.A, Berninghausen, O, Beckmann, R, Ito, K, Wilson, D.N. 登録日 2015-03-16 公開日 2015-04-29 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.9 Å) 主引用文献 Structure of the Bacillus subtilis 70S ribosome reveals the basis for species-specific stalling. Nat Commun, 6, 2015
3J7A	Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit 分子名称: 18S ribosomal RNA, 40S ribosomal protein eS1, 40S ribosomal protein eS10, ... 著者 Wong, W, Bai, X.C, Brown, A, Fernandez, I.S, Hanssen, E, Condron, M, Tan, Y.H, Baum, J, Scheres, S.H.W. 登録日 2014-06-03 公開日 2014-07-16 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. Elife, 3, 2014
3JBO	Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein eS1, ... 著者 Sun, M, Li, W, Blomqvist, K, Das, S, Hashem, Y, Dvorin, J.D, Frank, J. 登録日 2015-09-16 公開日 2015-10-14 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (5.8 Å) 主引用文献 Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic Acids Res., 43, 2015
3J81	CryoEM structure of a partial yeast 48S preinitiation complex 分子名称: 18S rRNA, MAGNESIUM ION, METHIONINE, ... 著者 Hussain, T, Llacer, J.L, Fernandez, I.S, Savva, C.G, Ramakrishnan, V. 登録日 2014-08-29 公開日 2014-11-05 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4 Å) 主引用文献 Structural changes enable start codon recognition by the eukaryotic translation initiation complex. Cell(Cambridge,Mass.), 159, 2014
3J9Z	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Li, W, Liu, Z, Koripella, R.K, Langlois, R, Sanyal, S, Frank, J. 登録日 2015-03-27 公開日 2015-07-01 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G. Sci Adv, 1, 2015
3J6Y	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Koh, C.S, Brilot, A.F, Grigorieff, N, Korostelev, A.A. 登録日 2014-04-16 公開日 2014-06-11 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center. Proc.Natl.Acad.Sci.USA, 111, 2014
3JCD	Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Zhang, D, Yan, K, Liu, G, Song, G, Luo, J, Shi, Y, Cheng, E, Wu, S, Jiang, T, Low, J, Gao, N, Qin, Y. 登録日 2015-12-01 公開日 2016-01-13 最終更新日 2024-03-20 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome Nat. Struct. Mol. Biol., 23, 2016
6I7V	Ribosomal protein paralogs bL31 and bL36 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 1,4-DIAMINOBUTANE, ... 著者 Pulk, A, Cate, J.H.D, Remme, J, Lilleorg, S, Reier, K, Peil, L, Liiv, A, Tammsalu, T. 登録日 2018-11-19 公開日 2018-12-05 最終更新日 2024-04-24 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 Bacterial ribosome heterogeneity: Changes in ribosomal protein composition during transition into stationary growth phase. Biochimie, 156, 2018
6HRM	E. coli 70S d2d8 stapled ribosome 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Schmied, W.H, Tnimov, Z, Uttamapinant, C, Rae, C.D, Fried, S.D, Chin, J.W. 登録日 2018-09-27 公開日 2018-12-19 最終更新日 2024-04-24 実験手法 ELECTRON MICROSCOPY (2.96 Å) 主引用文献 Controlling orthogonal ribosome subunit interactions enables evolution of new function. Nature, 564, 2018
3JAH	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codon 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Brown, A, Shao, S, Murray, J, Hegde, R.S, Ramakrishnan, V. 登録日 2015-06-10 公開日 2015-08-12 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.45 Å) 主引用文献 Structural basis for stop codon recognition in eukaryotes. Nature, 524, 2015
3JBP	Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein eS1, ... 著者 Sun, M, Li, W, Blomqvist, K, Das, S, Hashem, Y, Dvorin, J.D, Frank, J. 登録日 2015-09-16 公開日 2015-10-14 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.7 Å) 主引用文献 Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic Acids Res., 43, 2015
3JAM	CryoEM structure of 40S-eIF1A-eIF1 complex from yeast 分子名称: 18S rRNA, MAGNESIUM ION, RACK1, ... 著者 Llacer, J.L, Hussain, T, Ramakrishnan, V. 登録日 2015-06-17 公開日 2015-08-12 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.46 Å) 主引用文献 Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex. Mol.Cell, 59, 2015
3JCJ	Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Sprink, T, Ramrath, D.J.F, Yamamoto, H, Yamamoto, K, Loerke, J, Ismer, J, Hildebrand, P.W, Scheerer, P, Buerger, J, Mielke, T, Spahn, C.M.T. 登録日 2015-12-18 公開日 2016-03-09 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.7 Å) 主引用文献 Structures of ribosome-bound initiation factor 2 reveal the mechanism of subunit association. Sci Adv, 2, 2016
6HCM	Structure of the rabbit collided di-ribosome (stalled monosome) 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S12, ... 著者 Juszkiewicz, S, Chandrasekaran, V, Lin, Z, Kraatz, S, Ramakrishnan, V, Hegde, R.S. 登録日 2018-08-15 公開日 2018-10-17 最終更新日 2024-05-15 実験手法 ELECTRON MICROSCOPY (6.8 Å) 主引用文献 ZNF598 Is a Quality Control Sensor of Collided Ribosomes. Mol. Cell, 72, 2018
3J6X	S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II) 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ... 著者 Koh, C.S, Brilot, A.F, Grigorieff, N, Korostelev, A.A. 登録日 2014-04-16 公開日 2014-06-11 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (6.1 Å) 主引用文献 Taura syndrome virus IRES initiates translation by binding its tRNA-mRNA-like structural element in the ribosomal decoding center. Proc.Natl.Acad.Sci.USA, 111, 2014
6HTQ	Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome 分子名称: 16S rRNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... 著者 Wilson, D.N, Abdelshahid, M. 登録日 2018-10-04 公開日 2019-10-23 最終更新日 2020-09-30 実験手法 ELECTRON MICROSCOPY (4.5 Å) 主引用文献 Structural Basis for Regulation of the Opposing (p)ppGpp Synthetase and Hydrolase within the Stringent Response Orchestrator Rel. Cell Rep, 32, 2020
3JBN	Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein eS1, ... 著者 Sun, M, Li, W, Blomqvist, K, Das, S, Hashem, Y, Dvorin, J.D, Frank, J. 登録日 2015-09-16 公開日 2015-10-14 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (4.7 Å) 主引用文献 Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic Acids Res., 43, 2015
3J80	CryoEM structure of 40S-eIF1-eIF1A preinitiation complex 分子名称: 18S rRNA, MAGNESIUM ION, RACK1, ... 著者 Hussain, T, Llacer, J.L, Fernandez, I.S, Savva, C.G, Ramakrishnan, V. 登録日 2014-08-28 公開日 2014-11-05 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (3.75 Å) 主引用文献 Structural changes enable start codon recognition by the eukaryotic translation initiation complex. Cell(Cambridge,Mass.), 159, 2014
3JAG	Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codon 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, ... 著者 Brown, A, Shao, S, Murray, J, Hegde, R.S, Ramakrishnan, V. 登録日 2015-06-10 公開日 2015-08-12 最終更新日 2018-07-18 実験手法 ELECTRON MICROSCOPY (3.65 Å) 主引用文献 Structural basis for stop codon recognition in eukaryotes. Nature, 524, 2015
3JBV	Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps 分子名称: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ... 著者 Zhang, J, Pan, X.J, Yan, K.G, Sun, S, Gao, N, Sui, S.F. 登録日 2015-10-16 公開日 2016-01-27 最終更新日 2023-12-27 実験手法 ELECTRON MICROSCOPY (3.32 Å) 主引用文献 Mechanisms of ribosome stalling by SecM at multiple elongation steps Elife, 4, 2015

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