PDB: 9904 resultsInfo pagesStatus searchChemie searchBIRD

---

8TOX	Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope glycoprotein gp120, ... Authors: Wang, S, Kwong, P.D. Deposit date: 2023-08-04 Release date: 2024-08-14 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Cryo-EM structure of BG505 Env mutant A517E in complex with antibody ACS202 Fab To Be Published
4NP4	Clostridium difficile toxin B CROP domain in complex with FAB domains of neutralizing antibody bezlotoxumab Descriptor: Toxin B, bezlotoxumab heavy chain, bezlotoxumab light chain Authors: Orth, P, Xiao, L, Hernandez, L.D, Reichert, P, Sheth, P, Beaumont, M, Murgolo, N, Ermakov, G, DiNunzio, E, Racine, F, Karczewski, J, Secore, S, Ingram, R.N, Mayhood, T, Strickland, C, Therien, A.G. Deposit date: 2013-11-20 Release date: 2014-05-21 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.89 Å) Cite: Mechanism of Action and Epitopes of Clostridium difficile Toxin B-neutralizing Antibody Bezlotoxumab Revealed by X-ray Crystallography. J.Biol.Chem., 289, 2014
5OCX	Crystal structure of ACPA E4 in complex with CII-C-13-CIT Descriptor: 1,2-ETHANEDIOL, CII-C-13-CIT, Fab fragment anti-citrullinated protein antibody E4 - light chain, ... Authors: Dobritzsch, D, Ge, C, Holmdahl, R. Deposit date: 2017-07-04 Release date: 2018-07-04 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural Basis of Cross-Reactivity of Anti-Citrullinated Protein Antibodies. Arthritis Rheumatol, 71, 2019
4M62	Ontogeny of recognition specificity and functionality for the anti-HIV neutralizing antibody 4E10 Descriptor: GEP2 FV heavy chain, GEP2 FV light chain, SULFATE ION, ... Authors: Finton, K.A.K. Deposit date: 2013-08-08 Release date: 2014-10-08 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10. Plos Pathog., 10, 2014
3RKI	Structural basis for immunization with post-fusion RSV F to elicit high neutralizing antibody titers Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F0 Authors: Swanson, K.A, Settembre, E.C, Shaw, C.A, Dey, A.K, Rappuoli, R, Mandl, C.W, Dormitzer, P.D, Carfi, A. Deposit date: 2011-04-18 Release date: 2011-05-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural basis for immunization with postfusion respiratory syncytial virus fusion F glycoprotein (RSV F) to elicit high neutralizing antibody titers. Proc.Natl.Acad.Sci.USA, 108, 2011
4LRN	Ontogeny of recognition specificity and functionality for the anti-HIV antibody 4E10 Descriptor: GEP 1 heavy chain, GEP 1 light chain Authors: Finton, K.A.K. Deposit date: 2013-07-20 Release date: 2014-10-08 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10. Plos Pathog., 10, 2014
7MXE	Ab1245 Fab in complex with BG505 SOSIP.664 and 8ANC195 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 8ANC195 G52K5 Fab heavy chain, ... Authors: Abernathy, M.E, Bjorkman, P.J. Deposit date: 2021-05-19 Release date: 2021-10-27 Last modified: 2021-11-03 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Antibody elicited by HIV-1 immunogen vaccination in macaques displaces Env fusion peptide and destroys a neutralizing epitope. Npj Vaccines, 6, 2021
7S0D	Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody N-612-014 Descriptor: N-612-014 Fab Heavy Chain, N-612-014 Light Chain, Spike glycoprotein Authors: Barnes, C.O, Bjorkman, P.J. Deposit date: 2021-08-30 Release date: 2021-10-06 Last modified: 2022-03-16 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display. Cell Rep, 38, 2022
7S0E	Structure of the SARS-CoV-2 S1 subunit in complex with antibody N-612-004 Descriptor: N-612-004 Fab heavy chain, N-612-004 Light Chain, Spike glycoprotein Authors: Barnes, C.O, Bjorkman, P.J. Deposit date: 2021-08-30 Release date: 2021-10-06 Last modified: 2022-03-16 Method: ELECTRON MICROSCOPY (4.9 Å) Cite: Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display. Cell Rep, 38, 2022
7S0B	Structure of the SARS-CoV-2 RBD in complex with neutralizing antibody N-612-056 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, N-612-056 Fab Heavy Chain, N-612-056 Light Chain, ... Authors: Tanaka, S, Barnes, C.O, Bjorkman, P.J. Deposit date: 2021-08-30 Release date: 2021-10-06 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display. Cell Rep, 38, 2022
7S0C	Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody N-612-017 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, N-612-017 Fab Heavy Chain, ... Authors: Barnes, C.O, Bjorkman, P.J. Deposit date: 2021-08-30 Release date: 2021-10-06 Last modified: 2022-03-16 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Rapid identification of neutralizing antibodies against SARS-CoV-2 variants by mRNA display. Cell Rep, 38, 2022
7E5O	Crystal structure of SARS-CoV-2 RBD in complex with antibody NT-193 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NT-193 Heavy chain, NT-193 Light chain, ... Authors: Kita, S, Onodera, T, Adachi, Y, Moriayma, S, Nomura, T, Tadokoro, T, Anraku, Y, Yumoto, K, Tian, C, Fukuhara, H, Suzuki, T, Tonouchi, K, Sasaki, J, Sun, L, Hashiguchi, T, Takahashi, Y, Maenaka, K. Deposit date: 2021-02-19 Release date: 2021-09-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: A SARS-CoV-2 antibody broadly neutralizes SARS-related coronaviruses and variants by coordinated recognition of a virus-vulnerable site. Immunity, 54, 2021
6J9O	Crystal structure of a free scFv molecule from a group 2 influenza A viruses HA binding antibody AF4H1K1 Descriptor: Heavy chain of AF4H1K1 scFv, Light chain of AF4H1K1 scFv Authors: Xiao, H.X, Qi, J.X, Gao, F.G. Deposit date: 2019-01-23 Release date: 2020-01-29 Last modified: 2021-02-10 Method: X-RAY DIFFRACTION (1.397 Å) Cite: Light chain modulates heavy chain conformation to change protection profile of monoclonal antibodies against influenza A viruses. Cell Discov, 5, 2019
8JOW	Crystal structure of rabbit antibody with phosphorylated peptide bound Descriptor: ARG-PRO-HIS-PHE-PRO-GLN-PHE-SEP-TYR-SER-ALA-SER, Antibody (scFv), CHLORIDE ION Authors: Caaveiro, J.M.M, Kawade, R, Tsumoto, K. Deposit date: 2023-06-08 Release date: 2024-06-12 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Origin of high binding affinity and selectivity of phosphorylated epitope-specific rabbit antibodies To Be Published
4AT6	Fab fragment of antiporphyrin antibody 14H7 Descriptor: FAB 14H7 HEAVY CHAIN, FAB 14H7 LIGHT CHAIN Authors: Golinelli-Pimpaneau, B, Mahy, J.P. Deposit date: 2012-05-04 Release date: 2012-10-31 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.549 Å) Cite: Crystal Structure of Two Anti-Porphyrin Antibodies with Peroxidase Activity. Plos One, 7, 2012
7BBJ	CD73 in complex with the humanized antagonistic antibody mAb19 Descriptor: 5'-nucleotidase, MAGNESIUM ION, ZINC ION, ... Authors: Boettcher, J, Han, F. Deposit date: 2020-12-17 Release date: 2021-12-29 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.72 Å) Cite: A Novel Antagonistic CD73 Antibody for Inhibition of the Immunosuppressive Adenosine Pathway. Mol.Cancer Ther., 20, 2021
4LCI	Anti canine CD28 antibody, 1C6 Descriptor: FORMIC ACID, GLYCEROL, SODIUM ION, ... Authors: Gewe, M.M, Rupert, P.B, Strong, R.K. Deposit date: 2013-06-21 Release date: 2014-06-25 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Anti canine CD28 antibody, 1C6 To be Published
4ZYK	Crystal Structure of Quaternary-Specific RSV-Neutralizing Human Antibody AM14 Descriptor: 1,2-ETHANEDIOL, ACETATE ION, AM14 Fab heavy chain, ... Authors: Gilman, M.S.A, McLellan, J.S. Deposit date: 2015-05-21 Release date: 2015-07-29 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Characterization of a Prefusion-Specific Antibody That Recognizes a Quaternary, Cleavage-Dependent Epitope on the RSV Fusion Glycoprotein. Plos Pathog., 11, 2015
4JO1	Crystal structure of rabbit mAb R56 Fab in complex with V3 crown of HIV-1 JR-FL gp120 Descriptor: CALCIUM ION, gp120, monoclonal anti-HIV-1 gp120 V3 antibody R56 heavy chain, ... Authors: Pan, R.M, Kong, X.P. Deposit date: 2013-03-16 Release date: 2013-07-31 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.033 Å) Cite: Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans. J.Virol., 87, 2013
7M1C	Crystal structure of the HCMV pentamer-specific antibody 1-32 Descriptor: 1-32 Fab Heavy Chain, 1-32 Fab Light Chain Authors: Wrapp, D, McLellan, J.S. Deposit date: 2021-03-12 Release date: 2021-08-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv, 8, 2022
7LYV	Crystal structure of the HCMV pentamer-specific antibody 1-103 Descriptor: 1-103 Fab Heavy Chain, 1-103 Fab Light Chain Authors: Wrapp, D, Jones, H.G, McLellan, J.S. Deposit date: 2021-03-08 Release date: 2021-08-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv, 8, 2022
7LYW	Crystal structure of the HCMV pentamer-specific antibody 2-25 Descriptor: 2-25 Fab Heavy Chain, 2-25 Fab Light Chain Authors: Wrapp, D, Mishra, A.K, McLellan, J.S. Deposit date: 2021-03-08 Release date: 2021-08-11 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Structural basis for HCMV Pentamer recognition by neuropilin 2 and neutralizing antibodies. Sci Adv, 8, 2022
1OAQ	Free conformation Ab1 of the IgE SPE-7 Descriptor: HEAVY CHAIN, LIGHT CHAIN Authors: James, L.C, Roversi, P, Tawfik, D. Deposit date: 2003-01-21 Release date: 2004-01-15 Last modified: 2013-10-30 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Antibody Multispecificity Mediated by Conformational Diversity Science, 299, 2003
4AMK	Fab fragment of antiporphrin antibody 13g10 Descriptor: FAB13G10, HEAVY CHAIN, LIGHT CHAIN, ... Authors: Mahy, J.P, Golinelli-Pimpaneau, B. Deposit date: 2012-03-12 Release date: 2012-10-31 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Crystal Structure of Two Anti-Porphyrin Antibodies with Peroxidase Activity. Plos One, 7, 2012
4Z95	Fab structure of antibody S1-15 in complex with ssDNA DNA, 5'-5(dT)-p-3' Descriptor: PHOSPHATE ION, S1-15 Fab (IgG2b) heavy chain, S1-15 Fab (IgG2b) light chain Authors: Haji-Ghassemi, O, Evans, S.V. Deposit date: 2015-04-09 Release date: 2015-06-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem., 290, 2015

<73747576777879808182838485868788>