Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6HH4
DownloadVisualize
BU of 6hh4 by Molmil
ADP-ribosylserine hydrolase ARH3 of Latimeria chalumnae in complex with ADP-ribosyl-L-arginine
Descriptor: ACETATE ION, ADP-ribosyl-L-arginine, ADP-ribosylhydrolase like 2, ...
Authors:Ariza, A.
Deposit date:2018-08-24
Release date:2018-11-28
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Cell Chem Biol, 25, 2018
1F6K
DownloadVisualize
BU of 1f6k by Molmil
CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM II
Descriptor: GLYCEROL, N-ACETYLNEURAMINATE LYASE, SULFATE ION
Authors:Barbosa, J.A.R.G, Smith, B.J, DeGori, R, Lawrence, M.C.
Deposit date:2000-06-21
Release date:2000-12-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Active site modulation in the N-acetylneuraminate lyase sub-family as revealed by the structure of the inhibitor-complexed Haemophilus influenzae enzyme.
J.Mol.Biol., 303, 2000
5NSP
DownloadVisualize
BU of 5nsp by Molmil
Crystal structure of TNKS2 in complex with OD334
Descriptor: 1-[4-[4-(2-chlorophenyl)-5-pyrimidin-4-yl-1,2,4-triazol-3-yl]phenyl]-2-oxidanylidene-3~{H}-benzimidazole-5-carbonitrile, BICARBONATE ION, GLYCEROL, ...
Authors:Nkizinkiko, Y, Haikarainen, T, Lehtio, L.
Deposit date:2017-04-26
Release date:2017-11-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Discovery of a Novel Series of Tankyrase Inhibitors by a Hybridization Approach.
J. Med. Chem., 60, 2017
5LHC
DownloadVisualize
BU of 5lhc by Molmil
The structure of D456A mutant of Nt.BspD6I nicking endonuclease at 0.24 nm resolution .
Descriptor: GLYCEROL, Nicking endonuclease N.BspD6I, PHOSPHATE ION
Authors:Kachalova, G.S, Yunusova, A.K, Popov, A.N, Artyukh, R.I, Perevyazova, T.A, Bartunik, H.D, Zheleznaya, L.A.
Deposit date:2016-07-10
Release date:2017-08-16
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural implication of activity loss by D456A mutant of the nicking endonuclease Nt.BspD6I.
To Be Published
5LEW
DownloadVisualize
BU of 5lew by Molmil
DNA polymerase
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA polymerase III subunit alpha, SULFATE ION, ...
Authors:Banos-Mateos, S, Lang, U.F, Maslen, S.L, Skehel, J.M, Lamers, M.H.
Deposit date:2016-06-30
Release date:2017-10-25
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:High-fidelity DNA replication in Mycobacterium tuberculosis relies on a trinuclear zinc center.
Nat Commun, 8, 2017
1F88
DownloadVisualize
BU of 1f88 by Molmil
CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MERCURY (II) ION, RETINAL, ...
Authors:Okada, T, Palczewski, K, Stenkamp, R.E, Miyano, M.
Deposit date:2000-06-29
Release date:2000-08-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of rhodopsin: A G protein-coupled receptor.
Science, 289, 2000
5V3O
DownloadVisualize
BU of 5v3o by Molmil
Cereblon in complex with DDB1 and CC-220
Descriptor: (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione, DNA damage-binding protein 1, Protein cereblon, ...
Authors:Matyskiela, M, Pagarigan, B, Chamberlain, P.
Deposit date:2017-03-07
Release date:2017-05-03
Last modified:2018-02-07
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:A Cereblon Modulator (CC-220) with Improved Degradation of Ikaros and Aiolos.
J. Med. Chem., 61, 2018
1F6P
DownloadVisualize
BU of 1f6p by Molmil
CRYSTAL STRUCTURE ANALYSIS OF N-ACETYLNEURAMINATE LYASE FROM HAEMOPHILUS INFLUENZAE: CRYSTAL FORM III
Descriptor: N-ACETYL NEURAMINATE LYASE
Authors:Barbosa, J.A.R.G, Smith, B.J, DeGori, R, Lawrence, M.C.
Deposit date:2000-06-22
Release date:2000-11-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Active site modulation in the N-acetylneuraminate lyase sub-family as revealed by the structure of the inhibitor-complexed Haemophilus influenzae enzyme.
J.Mol.Biol., 303, 2000
5LF6
DownloadVisualize
BU of 5lf6 by Molmil
Human 20S proteasome complex with Z-LLY-ketoaldehyde at 2.1 Angstrom
Descriptor: CHLORIDE ION, LLY-ketoaldehyde peptide, MAGNESIUM ION, ...
Authors:Schrader, J, Henneberg, F, Mata, R, Tittmann, K, Schneider, T.R, Stark, H, Bourenkov, G, Chari, A.
Deposit date:2016-06-30
Release date:2016-08-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.07 Å)
Cite:The inhibition mechanism of human 20S proteasomes enables next-generation inhibitor design.
Science, 353, 2016
5LJJ
DownloadVisualize
BU of 5ljj by Molmil
Crystal structure of human Mps1 (TTK) in complex with Reversine
Descriptor: 1,2-ETHANEDIOL, Dual specificity protein kinase TTK, N~6~-cyclohexyl-N~2~-(4-morpholin-4-ylphenyl)-9H-purine-2,6-diamine
Authors:Hiruma, Y, Joosten, R.P, Perrakis, A.
Deposit date:2016-07-18
Release date:2016-10-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural basis of reversine selectivity in inhibiting Mps1 more potently than aurora B kinase.
Proteins, 84, 2016
1F9A
DownloadVisualize
BU of 1f9a by Molmil
CRYSTAL STRUCTURE ANALYSIS OF NMN ADENYLYLTRANSFERASE FROM METHANOCOCCUS JANNASCHII
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, HYPOTHETICAL PROTEIN MJ0541, MAGNESIUM ION
Authors:D'Angelo, I, Raffaelli, N, Dabusti, V, Lorenzi, T, Magni, G, Rizzi, M.
Deposit date:2000-07-09
Release date:2001-01-10
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of nicotinamide mononucleotide adenylyltransferase: a key enzyme in NAD(+) biosynthesis.
Structure Fold.Des., 8, 2000
5NXO
DownloadVisualize
BU of 5nxo by Molmil
Carbonic Anhydrase II Inhibitor RA6
Descriptor: 4-[(4-nitrophenyl)methyl]benzenesulfonamide, Carbonic anhydrase 2, ZINC ION
Authors:Brynda, J, Rezacova, P, Horejsi, M, Fanfrlik, J.
Deposit date:2017-05-10
Release date:2018-01-17
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Ranking Power of the SQM/COSMO Scoring Function on Carbonic Anhydrase II-Inhibitor Complexes.
Chemphyschem, 19, 2018
5LLL
DownloadVisualize
BU of 5lll by Molmil
Crystal structure of DACM wild type Transthyretin
Descriptor: Transthyretin
Authors:Sala, B.M, Ghadami, S.A, Bemporad, F, Chiti, F, Ricagno, S.
Deposit date:2016-07-27
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.42 Å)
Cite:FRET studies of various conformational states adopted by transthyretin.
Cell. Mol. Life Sci., 74, 2017
5O5R
DownloadVisualize
BU of 5o5r by Molmil
X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with a urea based inhibitor PSMA 1023
Descriptor: (2~{S})-2-[[(2~{S})-6-[[(2~{S})-2-[[4-[[[(2~{R})-2-[[(2~{R})-2-[(6-fluoranylpyridin-3-yl)carbonylamino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]methyl]phenyl]carbonylamino]-3-naphthalen-2-yl-propanoyl]amino]-1-oxidanyl-1-oxidanylidene-hexan-2-yl]carbamoylamino]pentanedioic acid, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Motlova, L, Novakova, Z, Barinka, C.
Deposit date:2017-06-02
Release date:2018-06-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:X-ray structure of human glutamate carboxypeptidase II (GCPII) in complex with a urea based inhibitor PSMA 1023
To Be Published
5UR1
DownloadVisualize
BU of 5ur1 by Molmil
FGFR1 kinase domain complex with SN37333 in reversible binding mode
Descriptor: 3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{1-[4-(dimethylamino)but-2-enoyl]piperidin-4-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one, Fibroblast growth factor receptor 1
Authors:Yosaatmadja, Y, Paik, W.-K, Smaill, J.B, Squire, C.J.
Deposit date:2017-02-09
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:2-Oxo-3, 4-dihydropyrimido[4, 5-d]pyrimidinyl derivatives as new irreversible pan fibroblast growth factor receptor (FGFR) inhibitors.
Eur J Med Chem, 135, 2017
6HUB
DownloadVisualize
BU of 6hub by Molmil
Yeast 20S proteasome with human beta2c (S171G) in complex with 16
Descriptor: (2~{S})-~{N}-[(2~{S},3~{R})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2-[[(2~{R})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-05
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
1FFO
DownloadVisualize
BU of 1ffo by Molmil
CRYSTAL STRUCTURE OF MURINE CLASS I H-2DB COMPLEXED WITH SYNTHETIC PEPTIDE GP33 (C9M/K1A)
Descriptor: BETA-2 MICROGLOBULIN BETA CHAIN, H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN, D-B, ...
Authors:Wang, B, Sharma, A, Maile, R, Saad, M, Collins, E.J, Frelinger, J.A.
Deposit date:2000-07-25
Release date:2002-12-11
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Peptidic termini play a significant role in TCR recognition.
J.Immunol., 169, 2002
5LN5
DownloadVisualize
BU of 5ln5 by Molmil
Crystal structure of the Wss1 E203Q mutant from S. pombe
Descriptor: CARBONATE ION, NICKEL (II) ION, Ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c
Authors:Groll, M, Stingele, J, Boulton, S.J.
Deposit date:2016-08-03
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mechanism and Regulation of DNA-Protein Crosslink Repair by the DNA-Dependent Metalloprotease SPRTN.
Mol.Cell, 64, 2016
5NUG
DownloadVisualize
BU of 5nug by Molmil
Motor domains from human cytoplasmic dynein-1 in the phi-particle conformation
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1, ...
Authors:Zhang, K, Foster, H.E, Carter, A.P.
Deposit date:2017-04-30
Release date:2017-06-28
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM Reveals How Human Cytoplasmic Dynein Is Auto-inhibited and Activated.
Cell, 169, 2017
5LV0
DownloadVisualize
BU of 5lv0 by Molmil
Structure of Human Neurolysin (E475Q) in complex with amyloid-beta 35-40 peptide product
Descriptor: CHLORIDE ION, GLY-VAL-VAL amyloid 35-40 fragment, Neurolysin, ...
Authors:Masuyer, G, Berntsson, R.P.-A, Teixeira, P.F, Kmiec, B, Glaser, E, Stenmark, P.
Deposit date:2016-09-12
Release date:2017-12-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and functional analysis of Neurolysin, a new component of the mitochondrial peptidolytic network
To Be Published
6HR9
DownloadVisualize
BU of 6hr9 by Molmil
Nitrocefin acylation of both catalytic serines of the Y409 mutant of penicillin-binding protein 3 from P. aeruginosa
Descriptor: Nitrocefin - open form, Peptidoglycan D,D-transpeptidase FtsI
Authors:Bellini, D, Dowson, C.G.
Deposit date:2018-09-26
Release date:2019-10-23
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Nitrocefin acylation of both catalytic serines of penicillin-binding protein 3 from P. aeruginosa
To Be Published
6HWA
DownloadVisualize
BU of 6hwa by Molmil
Yeast 20S proteasome in complex with 43
Descriptor: (2~{S})-~{N}-[(2~{S},3~{R})-1-[(4~{a}~{S},8~{a}~{S})-1,2,3,4,4~{a},5,6,7,8,8~{a}-decahydronaphthalen-2-yl]-4-methyl-3,4-bis(oxidanyl)pentan-2-yl]-3-(4-methoxyphenyl)-2-[[(2~{S})-2-(2-morpholin-4-ylethanoylamino)propanoyl]amino]propanamide, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-11
Release date:2019-01-30
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
5UVI
DownloadVisualize
BU of 5uvi by Molmil
Serial Millisecond Crystallography of Membrane and Soluble Protein Micro-crystals using Synchrotron Radiation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol, Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a, ...
Authors:Martin-Garcia, J.M, Conrad, C.E, Nelson, G, Stander, N, Zatsepin, N.A, Zook, J, Zhu, L, Geiger, J, Chun, E, Kissick, D, Hilgart, M.C, Ogata, C, Ishchenko, A, Nagaratnam, N, Roy-Chowdhury, S, Coe, J, Subramanian, G, Schaffer, A, James, D, Ketawala, G, Venugopalan, N, Xu, S, Corcoran, S, Ferguson, D, Weierstall, U, Spence, J.C.H, Cherezov, V, Fromme, P, Fischetti, R.F, Liu, W.
Deposit date:2017-02-20
Release date:2017-05-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Serial millisecond crystallography of membrane and soluble protein microcrystals using synchrotron radiation.
IUCrJ, 4, 2017
6HTD
DownloadVisualize
BU of 6htd by Molmil
Yeast 20S proteasome with human beta2c (S171G) in complex with 4
Descriptor: (2~{S})-~{N}-[(2~{S})-1-[[(2~{S})-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-2-[[(2~{S})-2-azido-3-phenyl-propanoyl]amino]-4-methyl-pentanamide, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Huber, E.M, Groll, M.
Deposit date:2018-10-03
Release date:2019-01-30
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure-Based Design of Inhibitors Selective for Human Proteasome beta 2c or beta 2i Subunits.
J.Med.Chem., 62, 2019
5UJA
DownloadVisualize
BU of 5uja by Molmil
Cryo-EM structure of bovine multidrug resistance protein 1 (MRP1) bound to leukotriene C4
Descriptor: (5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-( 2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid, bovine multidrug resistance protein 1 (MRP1),Multidrug resistance-associated protein 1
Authors:Johnson, Z.L, Chen, J.
Deposit date:2017-01-17
Release date:2017-02-22
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Structural Basis of Substrate Recognition by the Multidrug Resistance Protein MRP1.
Cell, 168, 2017

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon