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8V87
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BU of 8v87 by Molmil
60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
Descriptor: 25S rRNA (cytosine(2870)-C(5))-methyltransferase, 25S ribosomal RNA, 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase, ...
Authors:Cruz, V.E, Weirich, C.S, Peddada, N, Erzberger, J.P.
Deposit date:2023-12-04
Release date:2024-05-01
Method:ELECTRON MICROSCOPY (2.66 Å)
Cite:The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis.
Nat Commun, 15, 2024
8RT5
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BU of 8rt5 by Molmil
I-layer structure (TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
8RT6
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BU of 8rt6 by Molmil
Conformation-A of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
8RT8
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BU of 8rt8 by Molmil
Conformation-C of the full-length outer membrane core complex (TrwH/VirB7, TrwF/VirB9, TrwE/VirB10CTD) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (3.05 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
8RT4
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BU of 8rt4 by Molmil
O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Waksman, G.
Deposit date:2024-01-25
Release date:2024-06-19
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.46 Å)
Cite:Cryo-EM structure of a conjugative type IV secretion system suggests a molecular switch regulating pilus biogenesis.
Embo J., 2024
4U8T
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BU of 4u8t by Molmil
Crystal structure of YTH domain of Zygosaccharomyces rouxii MRB1 protein in complex with N6-Methyladenosine RNA
Descriptor: RNA (5'-R(*AP*GP*GP*(6MZ)P*CP*AP*U)-3'), ZYRO0G01672p
Authors:Luo, S, Tong, L.
Deposit date:2014-08-04
Release date:2014-09-10
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Molecular basis for the recognition of methylated adenines in RNA by the eukaryotic YTH domain.
Proc.Natl.Acad.Sci.USA, 111, 2014
2GKN
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BU of 2gkn by Molmil
Crystal structure of Mycobacterium tuberculosis trHbN, GlnE11Val mutant
Descriptor: CYANIDE ION, Hemoglobin-like protein HbN, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Milani, M, Bolognesi, M.
Deposit date:2006-04-03
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues
Biochemistry, 45, 2006
2GLN
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BU of 2gln by Molmil
Crystal structure of Mycobacterium tuberculosis trHbN, GlnE11Ala mutant
Descriptor: CYANIDE ION, Hemoglobin-like protein HbN, PHOSPHATE ION, ...
Authors:Milani, M, Bolognesi, M.
Deposit date:2006-04-05
Release date:2006-09-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Ligand interactions in the distal heme pocket of Mycobacterium tuberculosis truncated hemoglobin N: roles of TyrB10 and GlnE11 residues
Biochemistry, 45, 2006
4RB1
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BU of 4rb1 by Molmil
Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-E. coli Fur box
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*TP*AP*AP*TP*GP*AP*TP*AP*AP*TP*CP*AP*TP*TP*AP*TP*CP*CP*GP*C)-3'), DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family), MANGANESE (II) ION
Authors:Deng, Z, Chen, Z.
Deposit date:2014-09-12
Release date:2015-07-15
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Mechanistic insights into metal ion activation and operator recognition by the ferric uptake regulator.
Nat Commun, 6
5RB1
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BU of 5rb1 by Molmil
PanDDA analysis group deposition -- Crystal Structure of JMJD1B in complex with FM001700a
Descriptor: CHLORIDE ION, Lysine-specific demethylase 3B, MANGANESE (II) ION, ...
Authors:Snee, M, Nowak, R, Johansson, C, Burgess-Brown, N.A, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Oppermann, U.
Deposit date:2020-03-16
Release date:2020-04-22
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:PanDDA analysis group deposition of Human JMJD1B screened against the DSPL Fragment Library
To Be Published
6RB1
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BU of 6rb1 by Molmil
Human protein kinase CK2 alpha in complex with 2-cyano-2-propenamide compound 1
Descriptor: (~{E})-2-cyano-3-(3-methoxy-4-oxidanyl-phenyl)-~{N}-[5-(trifluoromethyl)-1,3,4-thiadiazol-2-yl]prop-2-enamide, 1,2-ETHANEDIOL, Casein kinase II subunit alpha, ...
Authors:Battistutta, R, Lolli, G.
Deposit date:2019-04-08
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A novel class of selective CK2 inhibitors targeting its open hinge conformation.
Eur.J.Med.Chem., 195, 2020
7RB1
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BU of 7rb1 by Molmil
Isocitrate Lyase-1 from Mycobacterium tuberculosis covalently modified by 5-descarboxy-5-nitro-D-isocitric acid
Descriptor: (3E)-3-(hydroxyimino)propanoic acid, GLYCEROL, GLYOXYLIC ACID, ...
Authors:Krieger, I.V, Mellott, D, Meek, T, Sacchettini, J.C.
Deposit date:2021-07-05
Release date:2021-12-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Mechanism-Based Inactivation of Mycobacterium tuberculosis Isocitrate Lyase 1 by (2 R ,3 S )-2-Hydroxy-3-(nitromethyl)succinic acid.
J.Am.Chem.Soc., 143, 2021
2RB1
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BU of 2rb1 by Molmil
2-ethoxyphenol in complex with T4 lysozyme L99A
Descriptor: 2-ethoxyphenol, Lysozyme, PHOSPHATE ION
Authors:Graves, A.P, Boyce, S.E, Shoichet, B.K.
Deposit date:2007-09-17
Release date:2008-06-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Rescoring docking hit lists for model cavity sites: predictions and experimental testing
J.Mol.Biol., 377, 2008
6RCB
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BU of 6rcb by Molmil
Human protein kinase CK2 alpha in complex with 2-cyano-2-propenamide compound 14
Descriptor: (~{E})-2-cyano-~{N}-(2-hydroxyphenyl)-3-(3-methoxy-4-oxidanyl-phenyl)prop-2-enamide, Casein kinase II subunit alpha, SULFATE ION
Authors:Dalle Vedove, A, Lolli, G.
Deposit date:2019-04-11
Release date:2020-04-08
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:A novel class of selective CK2 inhibitors targeting its open hinge conformation.
Eur.J.Med.Chem., 195, 2020
6GMA
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BU of 6gma by Molmil
Crystal structure of the FIP200 C-terminal region
Descriptor: RB1-inducible coiled-coil protein 1
Authors:Witt, M, Bock, T, Daumke, O.
Deposit date:2018-05-24
Release date:2019-03-06
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates.
Mol.Cell, 74, 2019
6DCE
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BU of 6dce by Molmil
X-ray structure of FIP200 claw domain
Descriptor: RB1-inducible coiled-coil protein 1, SULFATE ION
Authors:Su, M.-Y, Hurley, J.H.
Deposit date:2018-05-05
Release date:2019-03-06
Last modified:2019-05-01
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:FIP200 Claw Domain Binding to p62 Promotes Autophagosome Formation at Ubiquitin Condensates.
Mol. Cell, 74, 2019
4CRI
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BU of 4cri by Molmil
Crystal Structure of 53BP1 tandem tudor domains in complex with methylated K810 Rb peptide
Descriptor: RB1 PROTEIN, TUMOR SUPPRESSOR P53-BINDING PROTEIN 1
Authors:Krojer, T, Johansson, C, Gileadi, C, Fedorov, O, Carr, S, La Thangue, N.B, Vollmar, M, Crawley, L, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Oppermann, U.
Deposit date:2014-02-26
Release date:2014-08-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Lysine Methylation-Dependent Binding of 53BP1 to the Prb Tumor Suppressor.
Proc.Natl.Acad.Sci.USA, 111, 2014
7SRS
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BU of 7srs by Molmil
5-HT2B receptor bound to LSD in complex with beta-arrestin1 obtained by cryo-electron microscopy (cryoEM)
Descriptor: (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, 5-hydroxytryptamine receptor 2B, ...
Authors:Barros-Alvarez, X, Cao, C, Panova, O, Roth, B.L, Skiniotis, G.
Deposit date:2021-11-08
Release date:2022-09-21
Last modified:2022-10-19
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Signaling snapshots of a serotonin receptor activated by the prototypical psychedelic LSD.
Neuron, 110, 2022
6GYB
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BU of 6gyb by Molmil
Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri
Descriptor: VirB10 protein, VirB7, VirB9 protein
Authors:Sgro, G.G, Costa, T.R.D, Farah, C.S, Waksman, G.
Deposit date:2018-06-28
Release date:2018-10-24
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.28 Å)
Cite:Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri.
Nat Microbiol, 3, 2018
8GO8
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BU of 8go8 by Molmil
Structure of beta-arrestin1 in complex with a phosphopeptide corresponding to the human C5a anaphylatoxin chemotactic receptor 1, C5aR1
Descriptor: Beta-arrestin-1, C5a anaphylatoxin chemotactic receptor 1, Fab30 heavy chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2022-08-24
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
8GP3
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BU of 8gp3 by Molmil
Structure of beta-arrestin1 in complex with a phosphopeptide corresponding to the human C-X-C chemokine receptor type 4, CXCR4
Descriptor: Beta-arrestin-1, C-X-C chemokine receptor type 4, Fab30 Heavy Chain, ...
Authors:Maharana, J, Sarma, P, Yadav, M.K, Banerjee, R, Shukla, A.K.
Deposit date:2022-08-25
Release date:2023-05-17
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Structural snapshots uncover a key phosphorylation motif in GPCRs driving beta-arrestin activation.
Mol.Cell, 83, 2023
6TKO
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BU of 6tko by Molmil
Phosphorylated turkey beta1 adrenoceptor with bound agonist formoterol coupled to arrestin-2 in lipid nanodisc.
Descriptor: Beta-1 adrenergic receptor, Beta-arrestin-1, Fab30 heavy chain, ...
Authors:Lee, Y, Tate, C.G.
Deposit date:2019-11-28
Release date:2020-06-17
Last modified:2020-08-12
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Molecular basis of beta-arrestin coupling to formoterol-bound beta1-adrenoceptor.
Nature, 583, 2020
8HST
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BU of 8hst by Molmil
The structure of rat beta-arrestin1
Descriptor: Beta-arrestin-1
Authors:Yun, Y, Yoon, H.J, Choi, Y, Lee, H.H.
Deposit date:2022-12-20
Release date:2023-07-19
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:GPCR targeting of E3 ubiquitin ligase MDM2 by inactive beta-arrestin.
Proc.Natl.Acad.Sci.USA, 120, 2023
3GC3
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BU of 3gc3 by Molmil
Crystal Structure of Arrestin2S and Clathrin
Descriptor: Beta-arrestin-1, Clathrin heavy chain 1
Authors:Williams, J.C, Kang, D.S.
Deposit date:2009-02-21
Release date:2009-08-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of an arrestin2-clathrin complex reveals a novel clathrin binding domain that modulates receptor trafficking.
J.Biol.Chem., 284, 2009
3GD1
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BU of 3gd1 by Molmil
Structure of an Arrestin/Clathrin complex reveals a novel clathrin binding domain that modulates receptor trafficking
Descriptor: Beta-arrestin-1, Clathrin heavy chain 1, clathrin
Authors:Kang, D.S, Kern, R.C, Puthenveedu, M.A, von Zastrow, M, Williams, J.C, Benovic, J.L.
Deposit date:2009-02-23
Release date:2009-08-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structure of an arrestin2-clathrin complex reveals a novel clathrin binding domain that modulates receptor trafficking
J.Biol.Chem., 284, 2009

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