PDB: 909 resultsInfo pagesStatus searchChemie searchBIRD

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3EGZ	Crystal structure of an in vitro evolved tetracycline aptamer and artificial riboswitch Descriptor: 7-CHLOROTETRACYCLINE, MAGNESIUM ION, Tetracycline aptamer and artificial riboswitch, ... Authors: Xiao, H, Edwards, T.E, Ferre-D'Amare, A.R. Deposit date: 2008-09-11 Release date: 2008-10-28 Last modified: 2021-10-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural basis for specific, high-affinity tetracycline binding by an in vitro evolved aptamer and artificial riboswitch Chem.Biol., 15, 2008
1O0P	Solution Structure of the third RNA Recognition Motif (RRM) of U2AF65 in complex with an N-terminal SF1 peptide Descriptor: Splicing Factor SF1, Splicing factor U2AF 65 kDa subunit Authors: Selenko, P, Gregorovic, G, Sprangers, R, Stier, G, Rhani, Z, Kramer, A, Sattler, M. Deposit date: 2003-02-24 Release date: 2003-05-06 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural Basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP Mol.Cell, 11, 2003
3EGN	C-terminal RNA Recognition Motif of the U11/U12 65K Protein Descriptor: RNA-binding protein 40 Authors: Netter, C, Wahl, M.C. Deposit date: 2008-09-11 Release date: 2009-06-09 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Functional stabilization of an RNA recognition motif by a noncanonical N-terminal expansion Rna, 15, 2009
6M75	C-Myc DNA binding protein complex Descriptor: DNA (5'-D(*TP*CP*TP*TP*AP*TP*T)-3'), RNA-binding motif, single-stranded-interacting protein 1, ... Authors: Aggarwal, P, Bhavesh, N.S. Deposit date: 2020-03-17 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.57 Å) Cite: Hinge like domain motion facilitates human RBMS1 protein binding to proto-oncogene c-myc promoter. Nucleic Acids Res., 49, 2021
4ED5	Crystal structure of the two N-terminal RRM domains of HuR complexed with RNA Descriptor: 1,2-ETHANEDIOL, 1-METHOXY-2-(2-METHOXYETHOXY)ETHANE, 5'-R(*A*UP*UP*UP*UP*UP*AP*UP*UP*UP*U)-3', ... Authors: Wang, H, Zeng, F, Liu, Q, Niu, L, Teng, M, Li, X. Deposit date: 2012-03-27 Release date: 2012-05-23 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2 Å) Cite: The structure of the ARE-binding domains of Hu antigen R (HuR) undergoes conformational changes during RNA binding. Acta Crystallogr.,Sect.D, 69, 2013
5O3J	Crystal structure of TIA-1 RRM2 in complex with RNA Descriptor: Nucleolysin TIA-1 isoform p40, RNA (5'-R(P*UP*UP*C)-3') Authors: Sonntag, M, Jagtap, P.K.A, Hennig, J, Sattler, M. Deposit date: 2017-05-24 Release date: 2017-07-05 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Segmental, Domain-Selective Perdeuteration and Small-Angle Neutron Scattering for Structural Analysis of Multi-Domain Proteins. Angew. Chem. Int. Ed. Engl., 56, 2017
1PGZ	Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) Descriptor: 5'-D(*T*TP*AP*GP*GP*GP*TP*TP*AP*GP*(6MI)P*G)-3', Heterogeneous nuclear ribonucleoprotein A1 Authors: Myers, J.C, Moore, S.A, Shamoo, Y. Deposit date: 2003-05-28 Release date: 2003-11-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures J.Biol.Chem., 278, 2003
6JVX	Crystal structure of RBM38 in complex with RNA Descriptor: RNA (5'-R(*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*G)-3'), RNA-binding protein 38, SULFATE ION Authors: Qian, K, Li, M, Wang, J, Zhang, M, Wang, M. Deposit date: 2019-04-17 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Structural basis for mRNA recognition by human RBM38. Biochem.J., 477, 2020
6N3D	Structure of HIV Tat-specific factor 1 U2AF Homology Motif (APO-State) Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Loerch, S, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2018-11-15 Release date: 2019-01-02 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.13 Å) Cite: The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface. J. Biol. Chem., 294, 2019
1PO6	Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) Descriptor: 5'-D(*T*AP*GP*GP*(6MI)P*TP*TP*AP*GP*GP*G)-3', Heterogeneous nuclear ribonucleoprotein A1 Authors: Myers, J.C, Moore, S.A, Shamoo, Y. Deposit date: 2003-06-13 Release date: 2003-11-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures J.BIOL.CHEM., 278, 2003
1OIA	U1A rnp domain 1-95 Descriptor: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A Authors: Nagai, K, Evans, P.R. Deposit date: 2003-06-12 Release date: 2003-06-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Crystal Structure of the RNA-Binding Domain of the U1 Small Nuclear Ribonucleoprotein A Nature, 348, 1990
6HIP	Structure of SPF45 UHM bound to HIV-1 Rev ULM Descriptor: HIV-1 Rev (41-49), SODIUM ION, Splicing factor 45, ... Authors: Pabis, M, Corsini, L, Sattler, M. Deposit date: 2018-08-30 Release date: 2019-03-27 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Modulation of HIV-1 gene expression by binding of a ULM motif in the Rev protein to UHM-containing splicing factors. Nucleic Acids Res., 47, 2019
4CIO	RRM domain from C. elegans SUP-12 bound to GGUGUGC RNA Descriptor: 5'-R(*GP*GP*UP*GP*UP*GP*CP)-3', PROTEIN SUP-12, ISOFORM A Authors: Amrane, S, Mackereth, C.D. Deposit date: 2013-12-12 Release date: 2014-09-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Backbone-Independent Nucleic Acid Binding by Splicing Factor Sup-12 Reveals Key Aspects of Molecular Recognition Nat.Commun., 5, 2014
6NSX	Yeast Hsh155 Ligand bound to Human Tat-SF1 Motif Descriptor: CHLORIDE ION, HIV Tat-specific factor 1, Hsh155 Authors: Jenkins, J.L, Leach, J.R, Kielkopf, C.L. Deposit date: 2019-01-25 Release date: 2019-06-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2 Å) Cite: Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM-ULM interaction. Rna, 25, 2019
6NTY	2.1 A resolution structure of the Musashi-2 (Msi2) RNA recognition motif 1 (RRM1) domain Descriptor: PHOSPHATE ION, RNA-binding protein Musashi homolog 2 Authors: Lovell, S, Kashipathy, M.M, Battaile, K.P, Lan, L, Xiaoqing, W, Cooper, A, Gao, F.P, Xu, L. Deposit date: 2019-01-30 Release date: 2019-10-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal and solution structures of human oncoprotein Musashi-2 N-terminal RNA recognition motif 1. Proteins, 88, 2020
6NWW	Crystal structure of the RRM domain of S. pombe Puf1 in the P212121 space group Descriptor: CHLORIDE ION, Pumilio domain-containing protein C56F2.08c Authors: Qiu, C, Hall, T.M.T. Deposit date: 2019-02-07 Release date: 2019-07-03 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.06 Å) Cite: Distinct RNA-binding modules in a single PUF protein cooperate to determine RNA specificity. Nucleic Acids Res., 47, 2019
1P1T	NMR Structure of the N-terminal RRM domain of Cleavage stimulation factor 64 KDa subunit Descriptor: Cleavage stimulation factor, 64 kDa subunit Authors: Perez-Canadillas, J.M, Varani, G. Deposit date: 2003-04-14 Release date: 2003-08-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Recognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein Embo J., 22, 2003
1OPI	SOLUTION STRUCTURE OF THE THIRD RNA RECOGNITION MOTIF (RRM) OF U2AF65 IN COMPLEX WITH AN N-TERMINAL SF1 PEPTIDE Descriptor: SPLICING FACTOR SF1, SPLICING FACTOR U2AF 65 KDA SUBUNIT Authors: Selenko, P, Gregorovic, G, Sprangers, R, Stier, G, Rhani, Z, Kramer, A, Sattler, M. Deposit date: 2003-03-05 Release date: 2004-03-16 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural basis for the molecular recognition between human splicing factors U2AF65 and SF1/mBBP Mol.Cell, 11, 2003
6N3F	Structure of HIV Tat-specific factor 1 U2AF Homology Motif bound to SF3b1 ULM5 Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, HIV Tat-specific factor 1, ... Authors: Leach, J.R, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2018-11-15 Release date: 2019-01-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.099 Å) Cite: The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface. J. Biol. Chem., 294, 2019
4F02	Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and poly(A) Descriptor: Eukaryotic translation initiation factor 4 gamma 1, Polyadenylate-binding protein 1, RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') Authors: Safaee, N, Kozlov, G, Gehring, K.B. Deposit date: 2012-05-03 Release date: 2012-08-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Interdomain Allostery Promotes Assembly of the Poly(A) mRNA Complex with PABP and eIF4G. Mol.Cell, 48, 2012
3G9C	Crystal structure of the product Bacillus anthracis glmS ribozyme Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, GLMS RIBOZYME, MAGNESIUM ION, ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-13 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
6N3E	Structure of HIV Tat-specific factor 1 U2AF Homology Motif bound to U2AF ligand motif 4 Descriptor: FORMIC ACID, GLYCEROL, HIV Tat-specific factor 1, ... Authors: Loerch, S, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2018-11-15 Release date: 2019-01-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.893 Å) Cite: The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface. J. Biol. Chem., 294, 2019
3G8T	Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P Descriptor: 2-amino-2-deoxy-6-O-phosphono-alpha-D-glucopyranose, MAGNESIUM ION, RNA (5'-R(*AP*(A2M)P*GP*CP*GP*CP*CP*AP*GP*AP*AP*CP*U)-3'), ... Authors: Strobel, S.A, Cochrane, J.C, Lipchock, S.V, Smith, K.D. Deposit date: 2009-02-12 Release date: 2009-11-03 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural and chemical basis for glucosamine 6-phosphate binding and activation of the glmS ribozyme Biochemistry, 48, 2009
1NO8	SOLUTION STRUCTURE OF THE NUCLEAR FACTOR ALY RBD DOMAIN Descriptor: ALY Authors: Perez-Alvarado, G.C, Martinez-Yamout, M, Allen, M.M, Grosschedl, R, Dyson, H.J, Wright, P.E. Deposit date: 2003-01-15 Release date: 2003-08-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of the Nuclear Factor ALY: Insights into Post-Transcriptional Regulatory and mRNA Nuclear Export Processes Biochemistry, 42, 2003
1NU4	U1A RNA binding domain at 1.8 angstrom resolution reveals a pre-organized C-terminal helix Descriptor: MAGNESIUM ION, MALONIC ACID, U1A RNA binding domain Authors: Rupert, P.B, Xiao, H, Ferre-D'Amare, A.R. Deposit date: 2003-01-30 Release date: 2003-02-14 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.8 Å) Cite: U1A RNA-binding domain at 1.8 A resolution. Acta Crystallogr.,Sect.D, 59, 2003

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