6NSX

Yeast Hsh155 Ligand bound to Human Tat-SF1 Motif

Summary for 6NSX

• Entry DOI: 10.2210/pdb6nsx/pdb
• Descriptor: HIV Tat-specific factor 1, Hsh155, CHLORIDE ION, ... (4 entities in total)
• Functional Keywords: hiv tat-specific factor 1, tat-sf1, rna splicing factor, u2af homology motif, uhm, rna binding protein, u2af ligand motif, ulm, protein-peptide complex, pre-mrna splicing factor, hsh155, sf3b1, peptide binding protein
• Biological source: Homo sapiens (Human); More
• Total number of polymer chains: 2
• Total formula weight: 11936.27

Authors

Jenkins, J.L.,Leach, J.R.,Kielkopf, C.L. (deposition date: 2019-01-25, release date: 2019-06-05, Last modification date: 2023-10-11)

Primary citation

Talkish, J.,Igel, H.,Hunter, O.,Horner, S.W.,Jeffery, N.N.,Leach, J.R.,Jenkins, J.L.,Kielkopf, C.L.,Ares, M.
Cus2 enforces the first ATP-dependent step of splicing by binding to yeast SF3b1 through a UHM-ULM interaction.
Rna, 25:1020-1037, 2019

PubMed Abstract: Stable recognition of the intron branchpoint (BP) by the U2 snRNP to form the pre-spliceosome is the first ATP-dependent step of splicing. Genetic and biochemical data from yeast indicate that Cus2 aids U2 snRNA folding into the stem IIa conformation prior to pre-spliceosome formation. Cus2 must then be removed by an ATP-dependent function of Prp5 before assembly can progress. However, the location from which Cus2 is displaced and the nature of its binding to the U2 snRNP are unknown. Here, we show that Cus2 contains a conserved UHM (U2AF homology motif) that binds Hsh155, the yeast homolog of human SF3b1, through a conserved ULM (U2AF ligand motif). Mutations in either motif block binding and allow pre-spliceosome formation without ATP. A 2.0 Å resolution structure of the Hsh155 ULM in complex with the UHM of Tat-SF1, the human homolog of Cus2, and complementary binding assays show that the interaction is highly similar between yeast and humans. Furthermore, we show that Tat-SF1 can replace Cus2 function by enforcing ATP dependence of pre-spliceosome formation in yeast extracts. Cus2 is removed before pre-spliceosome formation, and both Cus2 and its Hsh155 ULM binding site are absent from available cryo-EM structure models. However, our data are consistent with the apparent location of the disordered Hsh155 ULM between the U2 stem-loop IIa and the HEAT repeats of Hsh155 that interact with Prp5. We propose a model in which Prp5 uses ATP to remove Cus2 from Hsh155 such that extended base-pairing between U2 snRNA and the intron BP can occur.

PubMed: 31110137
DOI: 10.1261/rna.070649.119

Experimental method

X-RAY DIFFRACTION (2 Å)