Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6U9L
DownloadVisualize
BU of 6u9l by Molmil
Imidazole-triggered RAS-specific subtilisin SUBT_BACAM
Descriptor: GLYCEROL, POTASSIUM ION, SUBTILISIN BPN', ...
Authors:Toth, E.A, Bryan, P.N, Orban, J.
Deposit date:2019-09-09
Release date:2020-09-16
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Engineering subtilisin proteases that specifically degrade active RAS.
Commun Biol, 4, 2021
6N2S
DownloadVisualize
BU of 6n2s by Molmil
Ternary complex crystal structure of DNA polymerase Beta with 5-carboxy-dC (5-caC) at the templating position
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(1CC)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2018-11-14
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.457 Å)
Cite:Molecular basis for the faithful replication of 5-methylcytosine and its oxidized forms by DNA polymerase beta.
J.Biol.Chem., 294, 2019
4M4V
DownloadVisualize
BU of 4m4v by Molmil
Structural evaluation R171L mutant of the aspergillus fumigatus kdnase (sialidase)
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, Extracellular sialidase/neuraminidase, putative, ...
Authors:Telford, J.C, Taylor, G.L.
Deposit date:2013-08-07
Release date:2014-09-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Active site mutants of a fungal KDNase
To be Published
4MF2
DownloadVisualize
BU of 4mf2 by Molmil
Structure of human DNA polymerase beta complexed with O6MG as the template base in a 1-nucleotide gapped DNA
Descriptor: DNA polymerase beta, SODIUM ION, synthetic downstream primer, ...
Authors:Koag, M.C, Min, K, Monzingo, A.F, Lee, S.
Deposit date:2013-08-27
Release date:2014-04-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Metal-dependent conformational activation explains highly promutagenic replication across O6-methylguanine by human DNA polymerase beta.
J.Am.Chem.Soc., 136, 2014
4LTU
DownloadVisualize
BU of 4ltu by Molmil
Crystal Structure of Ferredoxin from Rhodopseudomonas palustris HaA2
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin
Authors:Zhou, W.H, Zhang, T, Yang, H, Bell, S.G, Wong, L.-L.
Deposit date:2013-07-24
Release date:2014-10-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:Crystal Structure of Ferredoxin from Rhodopseudomonas palustris HaA2
To be Published
4OVH
DownloadVisualize
BU of 4ovh by Molmil
E. coli sliding clamp in complex with (R)-6-bromo-9-(2-(carboxymethylamino)-2-oxoethyl)-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid
Descriptor: (2R)-6-bromo-9-{2-[(carboxymethyl)amino]-2-oxoethyl}-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Yin, Z, Oakley, A.J.
Deposit date:2014-02-21
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs.
J.Med.Chem., 58, 2015
4OT4
DownloadVisualize
BU of 4ot4 by Molmil
X-ray Structure of the Adduct formed between cisplatin and Ribonuclease A
Descriptor: Cisplatin, Ribonuclease pancreatic
Authors:Messori, L, Merlino, A.
Deposit date:2014-02-13
Release date:2014-07-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Cisplatin binding to proteins: molecular structure of the ribonuclease a adduct.
Inorg.Chem., 53, 2014
6N2T
DownloadVisualize
BU of 6n2t by Molmil
Ternary complex crystal structure of DNA polymerase Beta with 5-hydroxymethyl-dC (5-hmC) at the templating position
Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(5HC)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ...
Authors:Batra, V.K, Wilson, S.H.
Deposit date:2018-11-14
Release date:2019-03-27
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular basis for the faithful replication of 5-methylcytosine and its oxidized forms by DNA polymerase beta.
J.Biol.Chem., 294, 2019
6OMW
DownloadVisualize
BU of 6omw by Molmil
Structure of Aedes aegypti OBP22 in the complex with palmitoleic acid
Descriptor: AAEL005772-PA, MALONIC ACID, PALMITOLEIC ACID
Authors:Jones, D.N, Wang, J.
Deposit date:2019-04-19
Release date:2019-05-08
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Aedes aegypti Odorant Binding Protein 22 selectively binds fatty acids through a conformational change in its C-terminal tail.
Sci Rep, 10, 2020
6OPB
DownloadVisualize
BU of 6opb by Molmil
Structure of Aedes aegypti OBP22 in the complex with arachidic acid
Descriptor: AAEL005772-PA, DIMETHYL SULFOXIDE, icosanoic acid
Authors:Jones, D.N, Wang, J.
Deposit date:2019-04-24
Release date:2019-05-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Aedes aegypti Odorant Binding Protein 22 selectively binds fatty acids through a conformational change in its C-terminal tail.
Sci Rep, 10, 2020
1F9I
DownloadVisualize
BU of 1f9i by Molmil
CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANT Y42F
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Brudler, R, Meyer, T.E, Genick, U.K, Tollin, G, Getzoff, E.D.
Deposit date:2000-07-10
Release date:2000-07-21
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Coupling of hydrogen bonding to chromophore conformation and function in photoactive yellow protein.
Biochemistry, 39, 2000
9CM8
DownloadVisualize
BU of 9cm8 by Molmil
UDP-GlcNAc 2-epimerase MnaA of Paenibacillus alvei
Descriptor: DI(HYDROXYETHYL)ETHER, UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
Authors:Legg, M.S.G, Mateyko, N, Evans, S.V.
Deposit date:2024-07-13
Release date:2024-10-02
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Insights into structure and activity of a UDP-GlcNAc 2-epimerase involved in secondary cell wall polymer biosynthesis in Paenibacillus alvei.
Front Mol Biosci, 11, 2024
9DOY
DownloadVisualize
BU of 9doy by Molmil
Fibrillar assembly of an D-enantiopure, C-alpha methylated, macrocyclic beta-hairpin
Descriptor: 5-amino-2,4,6-triiodobenzene-1,3-dicarboxylic acid, D-enantiopure, C-alpha methylated, ...
Authors:Samdin, T.D, Lubkowski, J, Anderson, C.F, Schneider, J.P.
Deposit date:2024-09-20
Release date:2025-04-30
Last modified:2025-05-07
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:From Hydrogel to Crystal: A Molecular Design Strategy that Chemically Modifies Racemic Gel-Forming Peptides to Furnish Crystalline Fibrils Stabilized by Parallel Rippled beta-Sheets.
J.Am.Chem.Soc., 147, 2025
4OUK
DownloadVisualize
BU of 4ouk by Molmil
Crystal structure of a C6-C4 SN3 inhibited ESTERASE B from LACTOBACILLUS RHAMNOSIS
Descriptor: (2R)-2,3-bis(hexyloxy)propyl hydrogen (S)-pentylphosphonate, Esterase B
Authors:Colbert, D.A, Bennett, M.D, Lun, D.J, Holland, R, Delabre, M.-L, Loo, T.S, Anderson, B.F, Norris, G.E.
Deposit date:2014-02-17
Release date:2014-08-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a C6-C4 SN3 inhibited ESTERASE B from LACTOBACILLUS RHAMNOSIS
TO BE PUBLISHED
6NX6
DownloadVisualize
BU of 6nx6 by Molmil
ECAII(D90T,K162T) MUTANT IN COMPLEX WITH CITRATE AT PH 5
Descriptor: ACETIC ACID, CITRIC ACID, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-02-08
Release date:2019-08-07
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Opportunistic complexes of E. coli L-asparaginases with citrate anions.
Sci Rep, 9, 2019
6NXB
DownloadVisualize
BU of 6nxb by Molmil
ECAII IN COMPLEX WITH CITRATE AT PH 7
Descriptor: CITRIC ACID, GLYCEROL, L-asparaginase 2
Authors:Lubkowski, J, Wlodawer, A.
Deposit date:2019-02-08
Release date:2019-08-07
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Opportunistic complexes of E. coli L-asparaginases with citrate anions.
Sci Rep, 9, 2019
6PT6
DownloadVisualize
BU of 6pt6 by Molmil
Crystal structure of PsS1_NC C84S in complex with i-neocarratetraose
Descriptor: 3,6-anhydro-2-O-sulfo-alpha-D-galactopyranose-(1-3)-4-O-sulfo-beta-D-galactopyranose, CALCIUM ION, exo-2S-iota carrageenan S1 sulfatase
Authors:Hettle, A.G, Boraston, A.B.
Deposit date:2019-07-15
Release date:2019-09-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Insights into the kappa / iota-carrageenan metabolism pathway of some marinePseudoalteromonasspecies.
Commun Biol, 2, 2019
4PNW
DownloadVisualize
BU of 4pnw by Molmil
E. coli sliding clamp in complex with (R)-6-bromo-9-(2-((S)-1-carboxy-2-phenylethylamino)-2-oxoethyl)-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid
Descriptor: (2R)-6-bromo-9-(2-{[(1S)-1-carboxy-2-phenylethyl]amino}-2-oxoethyl)-2,3,4,9-tetrahydro-1H-carbazole-2-carboxylic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Yin, Z, Oakley, A.J.
Deposit date:2014-02-21
Release date:2014-03-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Bacterial Sliding Clamp Inhibitors that Mimic the Sequential Binding Mechanism of Endogenous Linear Motifs.
J.Med.Chem., 58, 2015
4RR9
DownloadVisualize
BU of 4rr9 by Molmil
N-terminal editing domain of threonyl-tRNA synthetase from Aeropyrum pernix with L-Ser3AA (snapshot 4)
Descriptor: MAGNESIUM ION, Probable threonine--tRNA ligase 2, SERINE-3'-AMINOADENOSINE
Authors:Ahmad, S, Muthukumar, S, Yerabham, A.S.K, Kamarthapu, V, Sankaranarayanan, R.
Deposit date:2014-11-06
Release date:2015-07-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.
Nat Commun, 6, 2015
4RRL
DownloadVisualize
BU of 4rrl by Molmil
E129A mutant of N-terminal editing domain of threonyl-tRNA synthetase from Aeropyrum pernix with L-Ser3AA
Descriptor: Probable threonine--tRNA ligase 2, SERINE-3'-AMINOADENOSINE
Authors:Ahmad, S, Yerabham, A.S.K, Sankaranarayanan, R.
Deposit date:2014-11-06
Release date:2015-07-15
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.965 Å)
Cite:Specificity and catalysis hardwired at the RNA-protein interface in a translational proofreading enzyme.
Nat Commun, 6, 2015
4S0Q
DownloadVisualize
BU of 4s0q by Molmil
The X-ray structure of the adduct formed in the reaction between bovine pancreatic ribonuclease and carboplatin
Descriptor: Ribonuclease pancreatic, carboplatin
Authors:Merlino, A.
Deposit date:2015-01-04
Release date:2015-11-18
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Interactions of carboplatin and oxaliplatin with proteins: Insights from X-ray structures and mass spectrometry studies of their ribonuclease A adducts.
J.Inorg.Biochem., 153, 2015
8W6W
DownloadVisualize
BU of 8w6w by Molmil
Crystal Structure of C-terminal domain of nucleocapsid protein from SARS-CoV-2 in complex with ampicillin
Descriptor: (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID, 1,2-ETHANEDIOL, Nucleoprotein
Authors:Dhaka, P, Mahto, J.K, Tomar, S, Kumar, P.
Deposit date:2023-08-30
Release date:2025-03-05
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural insights into the RNA binding inhibitors of the C-terminal domain of the SARS-CoV-2 nucleocapsid.
J.Struct.Biol., 217, 2025
6VZK
DownloadVisualize
BU of 6vzk by Molmil
Crystal structure of human CaMKII-alpha (CAMK2A)kinase domain
Descriptor: 4'-HYDROXYCINNAMIC ACID, Calcium/calmodulin-dependent protein kinase type II subunit alpha
Authors:Ozden, C, Stratton, M.M, Garman, S.C.
Deposit date:2020-02-28
Release date:2020-04-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Characterization of CaMKII alpha holoenzyme stability.
Protein Sci., 29, 2020
4RKJ
DownloadVisualize
BU of 4rkj by Molmil
Crystal structure of thrombin mutant S195T (free form)
Descriptor: GLYCEROL, POTASSIUM ION, Thrombin heavy chain, ...
Authors:Pelc, A.L, Chen, Z, Gohara, D.W, Vogt, A.D, Pozzi, N, Di Cera, E.
Deposit date:2014-10-13
Release date:2015-03-11
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Why ser and not thr brokers catalysis in the trypsin fold.
Biochemistry, 54, 2015
4NM2
DownloadVisualize
BU of 4nm2 by Molmil
Structure of human DNA polymerase beta complexed with a nicked DNA containing a 8BrG-G at N-1 position and G-C at N position
Descriptor: 5'-D(*CP*CP*GP*AP*CP*GP*(BGM)P*CP*GP*CP*AP*TP*CP*AP*GP*C)-3', 5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*GP*C)-3', 5'-D(P*GP*TP*CP*GP*G)-3', ...
Authors:Koag, M.-C, Min, K, Monzingo, A.F, Lee, S.
Deposit date:2013-11-14
Release date:2014-01-22
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.524 Å)
Cite:Structural basis for promutagenicity of 8-halogenated Guanine.
J.Biol.Chem., 289, 2014

238582

PDB entries from 2025-07-09

PDB statisticsPDBj update infoContact PDBjnumon