PDB: 1507 resultsInfo pagesStatus searchChemie searchBIRD

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6NOG	Poised-state Dot1L bound to the H2B-Ubiquitinated nucleosome Descriptor: 601 DNA Strand 1, 601 DNA Strand 2, Histone H2A type 1, ... Authors: Worden, E.J, Hoffmann, N.A, Wolberger, C. Deposit date: 2019-01-16 Release date: 2019-02-20 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Mechanism of Cross-talk between H2B Ubiquitination and H3 Methylation by Dot1L. Cell, 176, 2019
6NN6	Structure of Dot1L-H2BK120ub nucleosome complex Descriptor: DNA (145-MER), Histone H2A type 1, Histone H2B 1.1, ... Authors: Anderson, C.J, Baird, M.R, Hsu, A, Barbour, E.H, Koyama, Y, Borgnia, M.J, McGinty, R.K. Deposit date: 2019-01-14 Release date: 2019-02-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural Basis for Recognition of Ubiquitylated Nucleosome by Dot1L Methyltransferase. Cell Rep, 26, 2019
6J62	Crystal structure of mISG15/NS1B complex Descriptor: Non-structural protein 1, Ubiquitin-like protein ISG15 Authors: Jiang, Y.N, Wang, X.Q. Deposit date: 2019-01-12 Release date: 2019-12-25 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.486 Å) Cite: Crystal structure of mISG15/NS1B complex To Be Published
6QF8	Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method Descriptor: Polyubiquitin-B Authors: ElGamacy, M, Truffault, V, Zhu, H, Coles, M. Deposit date: 2019-01-09 Release date: 2019-04-10 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mapping Local Conformational Landscapes of Proteins in Solution. Structure, 27, 2019
6NJD	Crystal structure of RavD (residues 1-200) from Legionella pneumophila (strain Corby) complexed with Met-1 linked di-ubiquitin Descriptor: Di-ubiquitin, MAGNESIUM ION, RavD Authors: Wang, X, Zhou, Y, Zhu, Y. Deposit date: 2019-01-03 Release date: 2019-05-22 Last modified: 2020-01-08 Method: X-RAY DIFFRACTION (2.05 Å) Cite: A bacterial effector deubiquitinase specifically hydrolyses linear ubiquitin chains to inhibit host inflammatory signalling. Nat Microbiol, 4, 2019
6NJG	Ubiquitin Variant in Complex with Ubiquitin Interacting Motif Descriptor: Polyubiquitin-B, Vacuolar protein sorting-associated protein 27 Authors: Manczyk, N, Sicheri, F. Deposit date: 2019-01-03 Release date: 2019-03-06 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Dimerization of a ubiquitin variant leads to high affinity interactions with a ubiquitin interacting motif. Protein Sci., 28, 2019
6NJ9	Active state Dot1L bound to the H2B-Ubiquitinated nucleosome, 2-to-1 complex Descriptor: 601 DNA Strand 1, 601 DNA Strand 2, Histone H2A type 1, ... Authors: Worden, E.J, Hoffmann, N.A, Wolberger, C. Deposit date: 2019-01-02 Release date: 2019-02-20 Last modified: 2021-06-16 Method: ELECTRON MICROSCOPY (2.96 Å) Cite: Mechanism of Cross-talk between H2B Ubiquitination and H3 Methylation by Dot1L. Cell, 176, 2019
6N8O	Cryo-EM structure of Rpl10-inserted (RI) pre-60S ribosomal subunit Descriptor: 5.8S rRNA, 5S rRNA, 60S ribosomal export protein NMD3, ... Authors: Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W. Deposit date: 2018-11-29 Release date: 2019-03-13 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun, 10, 2019
6N8N	Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit Descriptor: 5.8S rRNA, 5S rRNA, 60S ribosomal export protein NMD3, ... Authors: Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W. Deposit date: 2018-11-29 Release date: 2019-03-13 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun, 10, 2019
6N8M	Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit Descriptor: 5.8S RNA, 5S rRNA, 60S ribosomal export protein NMD3, ... Authors: Zhou, Y, Musalgaonkar, S, Johnson, A.W, Taylor, D.W. Deposit date: 2018-11-29 Release date: 2019-03-13 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Tightly-orchestrated rearrangements govern catalytic center assembly of the ribosome. Nat Commun, 10, 2019
6N6R	Crystal structure of ABIN-1 UBAN in complex with two M1-linked di-ubiquitins Descriptor: TNFAIP3-interacting protein 1, Ubiquitin Authors: Rahighi, S, Dikic, I, Wakatsuki, S. Deposit date: 2018-11-27 Release date: 2019-07-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains. J.Mol.Biol., 431, 2019
6N5M	Crystal structure of ABIN-1 UBAN in complex with one M1-linked di-ubiquitin Descriptor: Polyubiquitin-C, TNFAIP3-interacting protein 1 Authors: Rahighi, S, Dikic, I, Wakatsuki, S. Deposit date: 2018-11-22 Release date: 2019-07-17 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Molecular Recognition of M1-Linked Ubiquitin Chains by Native and Phosphorylated UBAN Domains. J.Mol.Biol., 431, 2019
6ISU	Crystal structure of Lys27-linked di-ubiquitin in complex with its selective interacting protein UCHL3 Descriptor: Ubiquitin, Ubiquitin carboxyl-terminal hydrolase isozyme L3 Authors: Ding, S, Pan, M, Zheng, Q, Ren, Y, Hong, D. Deposit date: 2018-11-19 Release date: 2019-02-06 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.866 Å) Cite: Chemical Protein Synthesis Enabled Mechanistic Studies on the Molecular Recognition of K27-linked Ubiquitin Chains. Angew. Chem. Int. Ed. Engl., 58, 2019
6I7Q	Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the C2221 form Descriptor: Elongin-B, Elongin-C, Endothelial PAS domain-containing protein 1, ... Authors: Chowdhury, R, Aguilera, L.S, Schofield, C.J. Deposit date: 2018-11-17 Release date: 2019-11-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.798 Å) Cite: HIF-2alpha-pVHL-elongin B-elongin C complex To Be Published
6I7R	Structure of pVHL-elongin B-elongin C (VCB) in complex with hydroxylated-HIF-2alpha (523-542) in the P43212 form Descriptor: Elongin-B, Elongin-C, Endothelial PAS domain-containing protein 1, ... Authors: Chowdhury, R, Aguilera, L.S, Schofield, C.J. Deposit date: 2018-11-17 Release date: 2019-11-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.949 Å) Cite: HIF-2alpha-pVHL-elongin B-elongin C complex To Be Published
6I5N	Crystal structure of SOCS2:Elongin C:Elongin B in complex with growth hormone receptor peptide Descriptor: COBALT (II) ION, Elongin-B, Elongin-C, ... Authors: Kung, W.W, Ramachandran, S, Makukhin, N, Bruno, E, Ciulli, A. Deposit date: 2018-11-14 Release date: 2019-05-29 Last modified: 2019-06-19 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Structural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase. Nat Commun, 10, 2019
6I5J	Crystal structure of SOCS2:Elongin C:Elongin B in complex with growth hormone receptor peptide Descriptor: COBALT (II) ION, Elongin-B, Elongin-C, ... Authors: Kung, W.W, Ramachandran, S, Makukhin, N, Bruno, E, Ciulli, A. Deposit date: 2018-11-13 Release date: 2019-05-29 Last modified: 2019-11-20 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase. Nat Commun, 10, 2019
6I4X	Crystal structure of SOCS2:Elongin C:Elongin B in complex with erythropoietin receptor peptide Descriptor: DI(HYDROXYETHYL)ETHER, Elongin-B, Elongin-C, ... Authors: Kung, W.W, Ramachandran, S, Makukhin, N, Bruno, E, Ciulli, A. Deposit date: 2018-11-12 Release date: 2019-05-29 Last modified: 2019-06-19 Method: X-RAY DIFFRACTION (2.69 Å) Cite: Structural insights into substrate recognition by the SOCS2 E3 ubiquitin ligase. Nat Commun, 10, 2019
6N13	UbcH7-Ub Complex with R0RBR Parkin and phosphoubiquitin Descriptor: E3 ubiquitin-protein ligase parkin, Ubiquitin-conjugating enzyme E2 L3, ZINC ION, ... Authors: Condos, T.E.C, Dunkerley, K.M, Freeman, E.A, Barber, K.R, Aguirre, J.D, Chaugule, V.K, Xiao, Y, Konermann, L, Walden, H, Shaw, G.S. Deposit date: 2018-11-08 Release date: 2018-11-28 Last modified: 2020-01-08 Method: SOLUTION NMR Cite: Synergistic recruitment of UbcH7~Ub and phosphorylated Ubl domain triggers parkin activation. EMBO J., 37, 2018
6IP6	Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. Deposit date: 2018-11-02 Release date: 2019-05-29 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6IP8	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. Deposit date: 2018-11-02 Release date: 2019-05-29 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6IP5	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. Deposit date: 2018-11-02 Release date: 2019-05-29 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6MUN	Structure of hRpn10 bound to UBQLN2 UBL Descriptor: 26S proteasome non-ATPase regulatory subunit 4, Ubiquilin-2 Authors: Chen, X, Walters, K.J. Deposit date: 2018-10-23 Release date: 2019-09-04 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of hRpn10 Bound to UBQLN2 UBL Illustrates Basis for Complementarity between Shuttle Factors and Substrates at the Proteasome. J.Mol.Biol., 431, 2019
6MTB	Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state) Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S. Deposit date: 2018-10-19 Release date: 2018-11-21 Last modified: 2019-05-15 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structures of translationally inactive mammalian ribosomes. Elife, 7, 2018
6MTD	Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel) Descriptor: 18S rRNA, 28S rRNA, 5.8S rRNA, ... Authors: Brown, A, Baird, M.R, Yip, M.C.J, Murray, J, Shao, S. Deposit date: 2018-10-19 Release date: 2018-11-21 Last modified: 2019-05-15 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Structures of translationally inactive mammalian ribosomes. Elife, 7, 2018

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