Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1MI3
DownloadVisualize
BU of 1mi3 by Molmil
1.8 Angstrom structure of xylose reductase from Candida tenuis in complex with NAD
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, xylose reductase
Authors:Kavanagh, K.L, Klimacek, M, Nidetzky, B, Wilson, D.K.
Deposit date:2002-08-21
Release date:2003-08-05
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of xylose reductase bound to NAD+ and the basis for single and dual co-substrate specificity in family 2 aldo-keto reductases
Biochem.J., 373, 2003
1J9E
DownloadVisualize
BU of 1j9e by Molmil
Low Temperature (100K) Crystal Structure of Flavodoxin D. vulgaris S35C Mutant at 1.44 Angstrom Resolution
Descriptor: FLAVIN MONONUCLEOTIDE, FLAVODOXIN
Authors:Artali, R, Bombieri, G, Meneghetti, F, Gilardi, G, Sadeghi, S.J, Cavazzini, D, Rossi, G.L.
Deposit date:2001-05-25
Release date:2001-09-05
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Comparison of the refined crystal structures of wild-type (1.34 A) flavodoxin from Desulfovibrio vulgaris and the S35C mutant (1.44 A) at 100 K.
Acta Crystallogr.,Sect.D, 58, 2002
3E3K
DownloadVisualize
BU of 3e3k by Molmil
Structural characterization of a putative endogenous metal chelator in the periplasmic nickel transporter NikA (butane-1,2,4-tricarboxylate without nickel form)
Descriptor: (2R)-butane-1,2,4-tricarboxylic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Cherrier, M.V, Cavazza, C, Bochot, C, Lemaire, D, Fontecilla-Camps, J.C.
Deposit date:2008-08-07
Release date:2008-09-16
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural characterization of a putative endogenous metal chelator in the periplasmic nickel transporter NikA
Biochemistry, 47, 2008
2NW6
DownloadVisualize
BU of 2nw6 by Molmil
Burkholderia cepacia lipase complexed with S-inhibitor
Descriptor: (1S)-1-(PHENOXYMETHYL)PROPYL METHYLPHOSPHONOCHLORIDOATE, CALCIUM ION, Lipase, ...
Authors:Luic, M, Stefanic, Z.
Deposit date:2006-11-14
Release date:2007-12-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Combined X-ray diffraction and QM/MM study of the Burkholderia cepacia lipase-catalyzed secondary alcohol esterification
J.Phys.Chem.B, 112, 2008
2YBT
DownloadVisualize
BU of 2ybt by Molmil
Crystal structure of human acidic chitinase in complex with bisdionin C
Descriptor: 1,1'-PROPANE-1,3-DIYLBIS(3,7-DIMETHYL-3,7-DIHYDRO-1H-PURINE-2,6-DIONE), ACIDIC MAMMALIAN CHITINASE, GLYCEROL
Authors:Sutherland, T.E, Andersen, O.A, Betou, M, Eggleston, I.M, Maizels, R.M, van Aalten, D, Allen, J.E.
Deposit date:2011-03-10
Release date:2011-06-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Analyzing airway inflammation with chemical biology: dissection of acidic mammalian chitinase function with a selective drug-like inhibitor.
Chem. Biol., 18, 2011
3S5O
DownloadVisualize
BU of 3s5o by Molmil
Crystal Structure of Human 4-hydroxy-2-oxoglutarate Aldolase Bound to Pyruvate
Descriptor: 1,2-ETHANEDIOL, 4-hydroxy-2-oxoglutarate aldolase, mitochondrial, ...
Authors:Riedel, T.J, Lowther, W.T.
Deposit date:2011-05-23
Release date:2011-10-26
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural and Biochemical Studies of Human 4-hydroxy-2-oxoglutarate Aldolase: Implications for Hydroxyproline Metabolism in Primary Hyperoxaluria.
Plos One, 6, 2011
3SN7
DownloadVisualize
BU of 3sn7 by Molmil
Highly Potent, Selective, and Orally Active Phosphodiestarase 10A Inhibitors
Descriptor: 8-fluoro-6-methoxy-3,4-dimethyl-1-(3-methylpyridin-4-yl)imidazo[1,5-a]quinoxaline, CHLORIDE ION, MAGNESIUM ION, ...
Authors:Parris, K.D.
Deposit date:2011-06-28
Release date:2011-10-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:Highly Potent, Selective, and Orally Active Phosphodiesterase 10A Inhibitors.
J.Med.Chem., 54, 2011
4QTE
DownloadVisualize
BU of 4qte by Molmil
Structure of ERK2 in complex with VTX-11e, 4-{2-[(2-CHLORO-4-FLUOROPHENYL)AMINO]-5-METHYLPYRIMIDIN-4-YL}-N-[(1S)-1-(3-CHLOROPHENYL)-2-HYDROXYETHYL]-1H-PYRROLE-2-CARBOXAMIDE
Descriptor: 1,2-ETHANEDIOL, 4-{2-[(2-chloro-4-fluorophenyl)amino]-5-methylpyrimidin-4-yl}-N-[(1S)-1-(3-chlorophenyl)-2-hydroxyethyl]-1H-pyrrole-2-carboxamide, CHLORIDE ION, ...
Authors:Chaikuad, A, Savitsky, P, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2014-07-07
Release date:2014-07-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A unique inhibitor binding site in ERK1/2 is associated with slow binding kinetics.
Nat.Chem.Biol., 10, 2014
3VU6
DownloadVisualize
BU of 3vu6 by Molmil
Short peptide HIV entry inhibitor MT-SC22EK with a M-T hook
Descriptor: MTSC22, SULFATE ION, Transmembrane protein gp41
Authors:Yao, X, Chong, H.H, Waltersperger, S, Wang, M.T, He, Y.X, Cui, S.
Deposit date:2012-06-19
Release date:2012-12-19
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.324 Å)
Cite:Short-peptide fusion inhibitors with high potency against wild-type and enfuvirtide-resistant HIV-1
Faseb J., 27, 2013
2DMW
DownloadVisualize
BU of 2dmw by Molmil
Solution structure of the LONGIN domain of Synaptobrevin-like protein 1
Descriptor: synaptobrevin-like 1 variant
Authors:Ohnishi, S, Sato, M, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-24
Release date:2006-10-24
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the LONGIN domain of Synaptobrevin-like protein 1
To be Published
3EFT
DownloadVisualize
BU of 3eft by Molmil
Crystal structure of the complex between Carbonic Anhydrase II and a spin-labeled sulfonamide incorporating TEMPO moiety
Descriptor: 3-chloro-4-{[(1-hydroxy-2,2,6,6-tetramethylpiperidin-4-yl)carbamothioyl]amino}benzenesulfonamide, Carbonic anhydrase 2, MERCURY (II) ION, ...
Authors:Temperini, C, Cecchi, A, Scozzafava, A, Supuran, C.T.
Deposit date:2008-09-10
Release date:2009-09-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Dissecting the Inhibition Mechanism of Cytosolic versus Transmembrane Carbonic Anhydrases by ESR
J.Phys.Chem.B, 113, 2009
5RET
DownloadVisualize
BU of 5ret by Molmil
PanDDA analysis group deposition -- Crystal Structure of SARS-CoV-2 main protease in complex with PCM-0102269
Descriptor: 1-{4-[(3-chlorophenyl)methyl]piperazin-1-yl}ethan-1-one, 3C-like proteinase, DIMETHYL SULFOXIDE
Authors:Fearon, D, Owen, C.D, Douangamath, A, Lukacik, P, Powell, A.J, Strain-Damerell, C.M, Resnick, E, Krojer, T, Gehrtz, P, Wild, C, Aimon, A, Brandao-Neto, J, Carbery, A, Dunnett, L, Skyner, R, Snee, M, London, N, Walsh, M.A, von Delft, F.
Deposit date:2020-03-15
Release date:2020-03-25
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystallographic and electrophilic fragment screening of the SARS-CoV-2 main protease.
Nat Commun, 11, 2020
1D1J
DownloadVisualize
BU of 1d1j by Molmil
CRYSTAL STRUCTURE OF HUMAN PROFILIN II
Descriptor: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, PROFILIN II, ...
Authors:Nodelman, I.M, Bowman, G.D, Lindberg, U, Schutt, C.E.
Deposit date:1999-09-17
Release date:2000-12-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structure determination of human profilin II: A comparative structural analysis of human profilins.
J.Mol.Biol., 294, 1999
1CZF
DownloadVisualize
BU of 1czf by Molmil
ENDO-POLYGALACTURONASE II FROM ASPERGILLUS NIGER
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, POLYGALACTURONASE II, ZINC ION
Authors:van Santen, Y, Kalk, K.H, Dijkstra, B.W.
Deposit date:1999-09-02
Release date:1999-10-28
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:1.68-A crystal structure of endopolygalacturonase II from Aspergillus niger and identification of active site residues by site-directed mutagenesis.
J.Biol.Chem., 274, 1999
3SGW
DownloadVisualize
BU of 3sgw by Molmil
Crystal structure of ribose-5-phosphate isomerase B RpiB from Coccidioides immitis semi-covalently bound to malonic acid
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, MALONIC ACID, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-06-15
Release date:2011-06-29
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural characterization of a ribose-5-phosphate isomerase B from the pathogenic fungus Coccidioides immitis.
Bmc Struct.Biol., 11, 2011
2LWB
DownloadVisualize
BU of 2lwb by Molmil
Structural model of BAD-1 repeat loop by NMR
Descriptor: Adhesin WI-1
Authors:Brandhorst, T, Klein, B, Tonelli, M.
Deposit date:2012-07-26
Release date:2013-07-31
Last modified:2024-11-27
Method:SOLUTION NMR
Cite:Structure and function of a fungal adhesin that mimics thrombospondin-1 by binding heparin sulfate glycosaminoglycan and suppressing T cell activation via interaction with CD47
To be Published
3SL5
DownloadVisualize
BU of 3sl5 by Molmil
Crystal structure of the catalytic domain of PDE4D2 complexed with compound 10d
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DIMETHYL SULFOXIDE, ...
Authors:Feil, S.F.
Deposit date:2011-06-24
Release date:2011-10-26
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Thiophene inhibitors of PDE4: Crystal structures show a second binding mode at the catalytic domain of PDE4D2.
Bioorg.Med.Chem.Lett., 21, 2011
2DL0
DownloadVisualize
BU of 2dl0 by Molmil
Solution structure of the SAM-domain of the SAM and SH3 domain containing protein 1
Descriptor: SAM and SH3 domain-containing protein 1
Authors:Goroncy, A.K, Sato, M, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-04-14
Release date:2006-10-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the SAM-domain of the SAM and SH3 domain containing protein 1
To be Published
3CFN
DownloadVisualize
BU of 3cfn by Molmil
Crystal structure of human transthyretin in complex with 1-anilino-8-naphthalene sulfonate
Descriptor: 8-ANILINO-1-NAPHTHALENE SULFONATE, Transthyretin
Authors:Lima, L.-M.T.R, Foguel, D, Polikarpov, I.
Deposit date:2008-03-04
Release date:2009-03-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Identification of a novel ligand binding motif in the transthyretin channel.
Bioorg.Med.Chem., 18, 2010
1TG6
DownloadVisualize
BU of 1tg6 by Molmil
Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP
Descriptor: 1,2-ETHANEDIOL, 1,4-DIETHYLENE DIOXIDE, GLYCEROL, ...
Authors:Kang, S.G, Maurizi, M.R, Thompson, M, Mueser, T, Ahvazi, B.
Deposit date:2004-05-28
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystallography and mutagenesis point to an essential role for the N-terminus of human mitochondrial ClpP
J.Struct.Biol., 148, 2004
1K7H
DownloadVisualize
BU of 1k7h by Molmil
CRYSTAL STRUCTURE OF SHRIMP ALKALINE PHOSPHATASE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ALKALINE PHOSPHATASE, MALEIC ACID, ...
Authors:De Backer, M.E, Mc Sweeney, S, Rasmussen, H.B, Riise, B.W, Lindley, P, Hough, E.
Deposit date:2001-10-19
Release date:2002-07-31
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:The 1.9 A Crystal Structure of Heat-Labile Shrimp Alkaline Phosphatase
J.Mol.Biol., 318, 2002
3NWO
DownloadVisualize
BU of 3nwo by Molmil
Crystal structure of Proline iminopeptidase Mycobacterium smegmatis
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MAGNESIUM ION, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2010-07-09
Release date:2010-08-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Increasing the structural coverage of tuberculosis drug targets.
Tuberculosis (Edinb), 95, 2015
4INS
DownloadVisualize
BU of 4ins by Molmil
THE STRUCTURE OF 2ZN PIG INSULIN CRYSTALS AT 1.5 ANGSTROMS RESOLUTION
Descriptor: INSULIN (CHAIN A), INSULIN (CHAIN B), ZINC ION
Authors:Dodson, G.G, Dodson, E.J, Hodgkin, D.C, Isaacs, N.W, Vijayan, M.
Deposit date:1989-07-10
Release date:1990-04-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The structure of 2Zn pig insulin crystals at 1.5 A resolution.
Philos.Trans.R.Soc.London,Ser.B, 319, 1988
4A3X
DownloadVisualize
BU of 4a3x by Molmil
Structure of the N-terminal domain of the Epa1 adhesin (Epa1-Np) from the pathogenic yeast Candida glabrata, in complex with calcium and lactose
Descriptor: CALCIUM ION, EPA1P, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
Authors:Ielasi, F.S, Decanniere, K, Willaert, R.G.
Deposit date:2011-10-05
Release date:2012-02-22
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The Epithelial Adhesin 1 (Epa1P) from the Human-Pathogenic Yeast Candida Glabrata : Structural and Functional Study of the Carbohydrate-Binding Domain
Acta Crystallogr.,Sect.D, 68, 2012
1K4T
DownloadVisualize
BU of 1k4t by Molmil
HUMAN DNA TOPOISOMERASE I (70 KDA) IN COMPLEX WITH THE POISON TOPOTECAN AND COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX
Descriptor: (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE, 2-(1-DIMETHYLAMINOMETHYL-2-HYDROXY-8-HYDROXYMETHYL-9-OXO-9,11-DIHYDRO-INDOLIZINO[1,2-B]QUINOLIN-7-YL)-2-HYDROXY-BUTYRIC ACID, 5'-D(*(TGP)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', ...
Authors:Staker, B.L, Hjerrild, K, Feese, M.D, Behnke, C.A, Burgin Jr, A.B, Stewart, L.J.
Deposit date:2001-10-08
Release date:2002-12-04
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The mechanism of topoisomerase I poisoning by a camptothecin analog
Proc.Natl.Acad.Sci.USA, 99, 2002

242842

PDB entries from 2025-10-08

PDB statisticsPDBj update infoContact PDBjnumon